Transcription of Alu DNA elements in blood cells of sporadic Creutzfeldt-Jakob disease (sCJD)

References

• Goodier JL, Kazazian HH. Retrotransposons revisited: the restraint and rehabilitation of parasites. Cell 2008; 135:23 - 35
   PubMed Web of Science ®Google Scholar
• Deininger PL, Batzer MA. Alu repeats and human diesease. Mol Genet Metab 1999; 67:183 - 193
   PubMed Web of Science ®Google Scholar
• Häsler J, Strub K. Alu RNP and Alu RNA regulate translation initiation in vitro. Nucleic Acids Res 2 2006; 34:2374 - 2385
   PubMed Web of Science ®Google Scholar
• Rubin CM, Kimura RH, Schmid CW. Selective stimulation of translational expression by Alu RNA. Nucleic Acids Res 2002; 30:3253 - 3261
   PubMed Web of Science ®Google Scholar
• Kondrashov AV, Kiefmann M, Ebnet K, Khanam T, Muddashetty RS, Brosius J. Inhibitory effect of naked neural BC1 RNA or BC200 RNA on eukaryotic in vitro translation systems is reversed by poly (A)-binding protein (PABP). J Mol Biol 2005; 353:88 - 103
   PubMed Web of Science ®Google Scholar
• Allen TA, Von Kaenel S, Goodrich JA, Kugel JF. The SINE-encoded mouse B2RNA represses mRNA transcription in response to heat shock. Nat Struct Mol Biol 2004; 11:816 - 821
   PubMed Web of Science ®Google Scholar
• Espinoza CA, Allen TA, Hieb AR, Kugel JF, Goodrich JA. B2 RNA binds directly to RNA polymerase II to repress transcript synthesis. Nat Struct Mol Biol 2004; 11:822 - 829
   PubMed Web of Science ®Google Scholar
• Yakovchuk P, Goodrich JA, Kugel JF. B2 RNA and Alu RNA repress transcription by disrupting contacts between RNA polymerase II and promotor DNA within assembled complexes. Proc Natl Acad Sci USA 2009; 106:5569 - 5574
   PubMed Web of Science ®Google Scholar
• Bennett EA, Keller H, Mills RE, Schmidt S, Moran JV, Weichenrieder O, et al. Active Alu retrotransposons in the human genome. Genome Res 2008; 18:1875 - 1883
   PubMed Web of Science ®Google Scholar
• Dewannieux M, Esnault C, Heidmann T. LINEmediated retrotransposition of marked Alu sequences. Nat Genet 2003; 35:41 - 48
   PubMed Web of Science ®Google Scholar
• Dewannieux M, Heidmann T. L1-mediated retrotransposition of murine B1 and B2 SINEs recapitulated in cultured cells. J Mol Biol 2005; 349:241 - 247
   PubMed Web of Science ®Google Scholar
• Smalheiser NR, Torvik VI. Alu elements within human mRNAs are probable micro RNA targets. Trends Genet 2006; 22:532 - 536
   PubMed Web of Science ®Google Scholar
• Mattick JS, Mehler MF. RNA editing, DNA recoding and the evolution of human cognition. Trends Neurosci 2008; 31:227 - 233
   PubMed Web of Science ®Google Scholar
• Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, et al. Clustal W and Clustal X version 2.0. Bioinformatics 2007; 23:2947 - 2948
   PubMed Web of Science ®Google Scholar
• Kuhn RM, Karolchik D, Zweig AS, Wang T, Smith KE, Rosenbloom KR, et al. The UCSC genome browser database: update 2009. Nucleic Acids Res 2009; 37:755 - 761
   PubMed Web of Science ®Google Scholar
• Sayers EW, Barrett T, Benson DA, Bryant SH, Canese K, Chetvernin V, et al. Database resources of the National Center for Biotechnology. Nucleic Acids Res 2009; 37:5 - 15
   PubMed Web of Science ®Google Scholar
• Roy-Engel AM, Salem AH, Oyeniran OO, Deininger L, Hedges DJ, Kilroy GE, et al. Active Alu element “A-tails”: size does matter. Genome Res 2002; 12:1333 - 1344
   PubMedGoogle Scholar
• Comeaux MS, Roy-Engel AM, Hedges DJ, Deininger PL. Diverse cis factors controlling Alu retrotransposition: what causes Alu elements to die?. Genome Res 2009; 19:545 - 555
   PubMed Web of Science ®Google Scholar
• Gibson TJ. RuNAway Diesease: A two cycle model for transmissible spongiform encephalopathies (TSEs) wherein SINE proliferation drives PrP overproduction. Genome Biol 2001; 2:6
   Google Scholar
• Cordaux R, Lee J, Dinoso L, Batzer MA. Recently integrated Alu retrotransposons are essentially neutral residents of the human genome. Gene 2006; 373:138 - 144
   Google Scholar
• Panning B, Smiley JR. Activation of expression of multiple subfamilies of human Alu elements by adenovirus type 5 and herpes simplex virus type 1. J Mol Biol 1995; 248:513 - 524
   PubMed Web of Science ®Google Scholar
• Shaik TH, Roy AM, Kim J, Batzer MA, Deininger PL. cDNAs derived from primary and small cytoplasmic Alu (scAlu) transcripts. J Mol Biol 1997; 271:222 - 234
   PubMed Web of Science ®Google Scholar
• Williams WP, Tamburic L, Astell CR. Increased levels of B1 and B2 SINE transcripts in mouse fibroblast cells due to minute virus of mice infection. Virology 2004; 327:233 - 241
   PubMed Web of Science ®Google Scholar
• Ueda Y, Chaudhuri G. Differential expression of B1-containing transcripts in L Leishmania-exposed macrophages. J Biol Chem 2000; 275:19428 - 19432
   PubMed Web of Science ®Google Scholar