Arabidopsis Co-Repressor Complexes Containing Polyamine Oxidase-Like Proteins and Plant-Specific Histone Methyltransferases

References

• Jenuwein T, Allis CD. Translating the histone code. Science 2001; 293:1074 - 1080
   PubMed Web of Science ®Google Scholar
• Kadonaga JT. Eukaryotic transcription: An interlaced network of transcription factors and chromatin-modifying machines. Cell 1998; 92:307 - 313
   PubMed Web of Science ®Google Scholar
• Strahl BD, Allis CD. The language of covalent histone modifications. Nature 2000; 403:41 - 45
   PubMed Web of Science ®Google Scholar
• Carrozza MJ, Utley RT, Workman JL, Cote J. The diverse functions of histone acetyltransferase complexes. Trends Genet 2003; 19:321 - 329
   PubMed Web of Science ®Google Scholar
• Goodrich J, Tweedie S. Remembrance of things past: Chromatin remodeling in plant development. Annu Rev Cell Dev Biol 2002; 18:707 - 746
   PubMed Web of Science ®Google Scholar
• Krichevsky A, Gutgarts H, Kozlovsky SV, Tzfira T, Sutton A, Sternglanz R, Mandel G, Citovsky V. AtCZS, an Arabidopsis C2H2 zinc finger-SET histone methyltransferase is a plant-specific chromatin modifier. Dev Biol 2007; 301 (in press)
   Google Scholar
• Kraner SD, Chong JA, Tsay HJ, Mandel G. Silencing the type II sodium channel gene: A model for neural-specific gene regulation. Neuron 1992; 9:37 - 44
   PubMed Web of Science ®Google Scholar
• Tapia-Ramirez J, Eggen BJ, Peral-Rubio MJ, Toledo-Aral JJ, Mandel G. A single zinc finger motif in the silencing factor REST represses the neural-specific type II sodium channel promoter. Proc Natl Acad Sci USA 1997; 94:1177 - 1182
   PubMed Web of Science ®Google Scholar
• Maue RA, Kraner D, Goodman RH, Mandel G. Neuron-specific expression of the rat brain type II sodium channel gene is directed by upstream regulatory elements. Neuron 1990; 4:231 - 233
   Web of Science ®Google Scholar
• Ballas N, Battaglioli E, Atouf F, Andres ME, Chenoweth J, Anderson ME, Burger C, Moniwa M, Davie JR, Bowers WJ, Federoff HJ, Rose DW, Rosenfeld MG, Brehm P, Mandel G. Regulation of neuronal traits by a novel transcriptional complex. Neuron 2001; 31:353 - 365
   PubMed Web of Science ®Google Scholar
• Chong JA, Tapia-Ramirez J, Kim S, Toledo-Aral JJ, Zheng Y, Boutros MC, Altshuller YM, Frohman MA, Kraner SD, Mandel G. REST: A mammalian silencer protein that restricts sodium channel gene expression to neurons. Cell 1995; 80:949 - 957
   PubMed Web of Science ®Google Scholar
• You A, Tong JK, Grozinger CM, Schreiber SL. CoREST is an integral component of the CoREST-human histone deacetylase complex. Proc Natl Acad Sci USA 2001; 98:1454 - 1458
   PubMed Web of Science ®Google Scholar
• Andres ME, Burger C, Peral-Rubio MJ, Battaglioli E, Anderson ME, Grimes J, Dallman J, Ballas N, Mandel G. CoREST: A functional corepressor required for regulation of neural-specific gene expression. Proc Natl Acad Sci USA 1999; 96:9873 - 9878
   PubMed Web of Science ®Google Scholar
• Aravind L, Iyer LM. The SWIRM domain: A conserved module found in chromosomal proteins points to novel chromatin-modifying activities. Genome Biol 2002; 3:0039.1 - 0039.7
   Google Scholar
• Tochio N, Umehara T, Koshiba S, Inoue M, Yabuki T, Aoki M, Seki E, Watanabe S, Tomo Y, Hanada M, Ikari M, Sato M, Terada T, Nagase T, Ohara O, Shirouzu M, Tanaka A, Kigawa T, Yokoyama S. Solution structure of the SWIRM domain of human histone demethylase LSD1. Structure 2006; 14:457 - 468
   PubMed Web of Science ®Google Scholar
• Shi Y, Lan F, Matson C, Mulligan P, Whetstine JR, Cole PA, Casero RA, Shi Y. Histone demethylation mediated by the nuclear amine oxidase homolog LSD1. Cell 2004; 119:941 - 953
   PubMed Web of Science ®Google Scholar
• Tschiersch B, Hofmann A, Krauss V, Dorn R, Korge G, Reuter G. The protein encoded by the Drosophila position-effect variegation suppressor gene Su(var)3–9 combines domains of antagonistic regulators of homeotic gene complexes. EMBO J 1994; 13:3822 - 3831
   PubMed Web of Science ®Google Scholar
• Tachibana M, Sugimoto K, Fukushima T, Shinkai Y. Set domain-containing protein, G9a, is a novel lysine-preferring mammalian histone methyltransferase with hyperactivity and specific selectivity to lysines 9 and 27 of histone H3. J Biol Chem 2001; 276:25309 - 25317
   PubMed Web of Science ®Google Scholar
• Roopra A, Qazi R, Schoenike B, Daley TJ, Morrison JF. Localized domains of G9a-mediated histone methylation are required for silencing of neuronal genes. Mol Cell 2004; 14:727 - 738
   PubMedGoogle Scholar
• Ballas N, Mandel G. The many faces of REST oversee epigenetic programming of neuronal genes. Curr Opin Neurobiol 2005; 15:500 - 506
   PubMed Web of Science ®Google Scholar
• Grimes JA, Nielsen SJ, Battaglioli E, Miska EA, Speh JC, Berry DL, Atouf F, Holdener BC, Mandel G, Kouzarides T. The corepressor mSin3A is a functional component of the REST-CoREST repressor complex. J Biol Chem 2000; 275:9461 - 9467
   PubMed Web of Science ®Google Scholar
• Cowger JJ, Zhao Q, Isovic M, Torchia J. Biochemical characterization of the zinc-finger protein 217 transcriptional repressor complex: Identification of a ZNF217 consensus recognition sequence. Oncogene 2006; In press
   PubMed Web of Science ®Google Scholar
• Loidl P. A plant dialect of the histone language. Trends Plant Sci 2004; 9:84 - 90
   PubMed Web of Science ®Google Scholar
• Wagner D. Chromatin regulation of plant development. Curr Opin Plant Biol 2003; 6:20 - 28
   PubMed Web of Science ®Google Scholar
• He Y, Michaels SD, Amasino RM. Regulation of flowering time by histone acetylation in Arabidopsis. Science 2003; 302:1751 - 1754
   PubMed Web of Science ®Google Scholar
• Lindroth AM, Shultis D, Jasencakova Z, Fuchs J, Johnson L, Schubert D, Patnaik D, Pradhan S, Goodrich J, Schubert I, Jenuwein T, Khorasanizadeh S, Jacobsen SE. Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3. EMBO J 2004; 23:4286 - 4296
   PubMed Web of Science ®Google Scholar
• Jasencakova Z, Soppe WJ, Meister A, Gernand D, Turner BM, Schubert I. Histone modifications in Arabidopsis—High methylation of H3 lysine 9 is dispensable for constitutive heterochromatin. Plant J 2003; 33:471 - 480
   PubMed Web of Science ®Google Scholar
• Soppe WJ, Jasencakova Z, Houben A, Kakutani T, Meister A, Huang MS, Jacobsen SE, Schubert I, Fransz PF. DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis. EMBO J 2002; 21:6549 - 6559
   PubMed Web of Science ®Google Scholar
• Bastow R, Mylne JS, Lister C, Lippman Z, Martienssen RA, Dean C. Vernalization requires epigenetic silencing of FLC by histone methylation. Nature 2004; 427:164 - 167
   PubMed Web of Science ®Google Scholar
• Ebert A, Lein S, Schotta G, Reuter G. Histone modification and the control of heterochromatic gene silencing in Drosophila. Chromosome Res 2006; 14:377 - 392
   PubMed Web of Science ®Google Scholar
• Zhao Z, Yu Y, Meyer D, Wu C, Shen WH. Prevention of early flowering by expression of FLOWERING LOCUS C requires methylation of histone H3 K36. Nat Cell Biol 2005; 7:1156 - 1160
   Web of Science ®Google Scholar
• Verbsky ML, Richards EJ. Chromatin remodeling in plants. Curr Opin Plant Biol 2001; 4:494 - 500
   PubMed Web of Science ®Google Scholar
• Li G, Hall TC, Holmes-Davis R. Plant chromatin: Development and gene control. Bioessays 2002; 24:234 - 243
   PubMed Web of Science ®Google Scholar
• Pandey R, Müller A, Napoli CA, Selinger DA, Pikaard CS, Richards EJ, Bender J, Mount DW, Jorgensen RA. Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes. Nucl Acid Res 2002; 30:5036 - 5055
   PubMed Web of Science ®Google Scholar
• Springer NM, Napoli CA, Selinger DA, Pandey R, Cone KC, Chandler VL, Kaeppler HF, Kaeppler SM. Comparative analysis of SET domain proteins in maize and Arabidopsis reveals multiple duplications preceding the divergence of monocots and dicots. Plant Physiol 2003; 132:907 - 925
   PubMed Web of Science ®Google Scholar
• Jepsen K, Rosenfeld MG. Biological roles and mechanistic actions of corepressor complexes. J Cell Sci 2002; 115:689 - 698
   PubMed Web of Science ®Google Scholar
• Ballas N, Grunseich C, Lu DD, Speh JC, Mandel G. REST and its corepressors mediate plasticity of neuronal gene chromatin throughout neurogenesis. Cell 2005; 121:645 - 657
   PubMed Web of Science ®Google Scholar
• Cheung WL, Ajiro K, Samejima K, Kloc M, Cheung P, Mizzen CA, Beeser A, Etkin LD, Chernoff J, Earnshaw WC, Allis CD. Apoptotic phosphorylation of histone H2B is mediated by mammalian sterile twenty kinase. Cell 2003; 113:507 - 517
   PubMed Web of Science ®Google Scholar
• Robzyk K, Recht J, Osley MA. Rad6-dependent ubiquitination of histone H2B in yeast. Science 2000; 287:501 - 504
   PubMed Web of Science ®Google Scholar
• Schoenherr CJ, Anderson DJ. The neuron-restrictive silencer factor (NRSF): A coordinate repressor of multiple neuron-specific genes. Science 1995; 267:1360 - 1363
   PubMed Web of Science ®Google Scholar