DICER-LIKE1 processed trans-acting siRNAs mediate DNA methylation

References

• Ghildiyal M, Zamore PD. Small silencing RNAs: an expanding universe. Nat Rev Genet 2009; 10:94 - 108; http://dx.doi.org/10.1038/nrg2504; PMID: 19148191
   PubMed Web of Science ®Google Scholar
• Voinnet O. Origin, biogenesis, and activity of plant microRNAs. Cell 2009; 136:669 - 87; http://dx.doi.org/10.1016/j.cell.2009.01.046; PMID: 19239888
   PubMed Web of Science ®Google Scholar
• Golden TA, Schauer SE, Lang JD, Pien S, Mushegian AR, Grossniklaus U, et al. SHORT INTEGUMENTS1/SUSPENSOR1/CARPEL FACTORY, a Dicer homolog, is a maternal effect gene required for embryo development in Arabidopsis. Plant Physiol 2002; 130:808 - 22; http://dx.doi.org/10.1104/pp.003491; PMID: 12376646
   PubMed Web of Science ®Google Scholar
• Xie Z, Kasschau KD, Carrington JC. Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation. Curr Biol 2003; 13:784 - 9; http://dx.doi.org/10.1016/S0960-9822(03)00281-1; PMID: 12725739
   PubMed Web of Science ®Google Scholar
• Brodersen P, Sakvarelidze-Achard L, Bruun-Rasmussen M, Dunoyer P, Yamamoto YY, Sieburth L, et al. Widespread translational inhibition by plant miRNAs and siRNAs. Science 2008; 320:1185 - 90; http://dx.doi.org/10.1126/science.1159151; PMID: 18483398
   PubMed Web of Science ®Google Scholar
• Rajagopalan R, Vaucheret H, Trejo J, Bartel DP. A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana.. Genes Dev 2006; 20:3407 - 25; http://dx.doi.org/10.1101/gad.1476406; PMID: 17182867
   PubMed Web of Science ®Google Scholar
• Wu L, Zhou H, Zhang Q, Zhang J, Ni F, Liu C, et al. DNA methylation mediated by a microRNA pathway. Mol Cell 2010; 38:465 - 75; http://dx.doi.org/10.1016/j.molcel.2010.03.008; PMID: 20381393
   PubMed Web of Science ®Google Scholar
• Allen E, Xie Z, Gustafson AM, Carrington JC. microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 2005; 121:207 - 21; http://dx.doi.org/10.1016/j.cell.2005.04.004; PMID: 15851028
   PubMed Web of Science ®Google Scholar
• Yoshikawa M, Peragine A, Park MY, Poethig RS. A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis. Genes Dev 2005; 19:2164 - 75; http://dx.doi.org/10.1101/gad.1352605; PMID: 16131612
   PubMed Web of Science ®Google Scholar
• Vazquez F, Vaucheret H, Rajagopalan R, Lepers C, Gasciolli V, Mallory AC, et al. Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs. Mol Cell 2004; 16:69 - 79; http://dx.doi.org/10.1016/j.molcel.2004.09.028; PMID: 15469823
   PubMed Web of Science ®Google Scholar
• Axtell MJ, Jan C, Rajagopalan R, Bartel DP. A two-hit trigger for siRNA biogenesis in plants. Cell 2006; 127:565 - 77; http://dx.doi.org/10.1016/j.cell.2006.09.032; PMID: 17081978
   PubMed Web of Science ®Google Scholar
• Chen HM, Chen LT, Patel K, Li YH, Baulcombe DC, Wu SH. 22-Nucleotide RNAs trigger secondary siRNA biogenesis in plants. Proc Natl Acad Sci USA 2010; 107:15269 - 74; http://dx.doi.org/10.1073/pnas.1001738107; PMID: 20643946
   PubMed Web of Science ®Google Scholar
• Manavella PA, Koenig D, Weigel D. Plant secondary siRNA production determined by microRNA-duplex structure. Proc Natl Acad Sci USA 2012; 109:2461 - 6; http://dx.doi.org/10.1073/pnas.1200169109; PMID: 22308502
   PubMed Web of Science ®Google Scholar
• Lister R, O’Malley RC, Tonti-Filippini J, Gregory BD, Berry CC, Millar AH, et al. Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell 2008; 133:523 - 36; http://dx.doi.org/10.1016/j.cell.2008.03.029; PMID: 18423832
   PubMed Web of Science ®Google Scholar
• Wu L, Mao L, Qi Y. Roles of DICER-LIKE and ARGONAUTE proteins in TAS-derived siRNAs triggered DNA methylation. Plant Physiol 2012; 160:990 - 9; http://dx.doi.org/10.1104/pp.112.200279; PMID: 22846193
   PubMed Web of Science ®Google Scholar
• Henderson IR, Zhang X, Lu C, Johnson L, Meyers BC, Green PJ, et al. Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nat Genet 2006; 38:721 - 5; http://dx.doi.org/10.1038/ng1804; PMID: 16699516
   PubMed Web of Science ®Google Scholar
• Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, et al. Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5′ terminal nucleotide. Cell 2008; 133:116 - 27; http://dx.doi.org/10.1016/j.cell.2008.02.034; PMID: 18342361
   PubMed Web of Science ®Google Scholar
• Law JA, Jacobsen SE. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet 2010; 11:204 - 20; http://dx.doi.org/10.1038/nrg2719; PMID: 20142834
   PubMed Web of Science ®Google Scholar
• Gruntman E, Qi Y, Slotkin RK, Roeder T, Martienssen RA, Sachidanandam R. Kismeth: analyzer of plant methylation states through bisulfite sequencing. BMC Bioinformatics 2008; 9:371; http://dx.doi.org/10.1186/1471-2105-9-371; PMID: 18786255
   PubMed Web of Science ®Google Scholar