DNA Fingerprinting Analysis of the Genus Phytophthora in Korea

References

• Baldauf, S. L., Roger, A. J., Wenk-Siefert, I. and Doolittle, W. F. 2000. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290: 972–977.
   Google Scholar
• Brasier, C. M. 1991. Current questions in Phytophthora systematics: The role of the population approach. In Phytophthora (Lucas, J. A., Shattock, R. C., Shaw, D. S. and Cooke, L. R., Eds.), pp. 104–128. Cambridge Univ. Press, Cambridge.
   Google Scholar
• Brasier, C. M. 1992a. Oak tree mortality in Iberia. Nature 360: 539.
   Google Scholar
• Brasier, C. M. 1992b. Evolutionary biology of Phytophthora: I. Genetic system, sexuality and the generation of variation. Annu. Rev. Phytopathol. 30: 153–171.
   Google Scholar
• Brasier, C. M. 1997. Fungal species in practice: Identifying species units in fungi. In Species: The Units of Biodiversity (Claridge, M. F., Dawah, H. A. and Wilson, M. R., Eds.), pp. 135–170. Chapman and Hall, London.
   Google Scholar
• Brasier, C. M., Cooke, D. E. L. and Dunca, J. M. 1999. Origin of a new Phytophthora pathogen through interspecific hybridization. Proc. Natl. Acad. Sci. USA 96: 5878–5883.
   Google Scholar
• Brasier, C. M. and Hansen, E. M. 1992. Evolutionary biology of Phytophthora. Part II: Phylogeny, speciation, and population structure. Ann. Rev. Phytopathol. 30: 173–200.
   Google Scholar
• Cooke, D. E. L. and Duncan, J. M. 1997. Phylogenetic analysis of Phytophthora species based on ITS1 and ITS2 sequences of the ribosomal RNA gene repeat. Mycol. Res. 101: 667–677.
   Google Scholar
• Crawford, A. R., Bassam, B. J., Drenth, A., Maclean, D. J. and Irwin, J. A. G. 1996. Evolutionary relationships among Phytophthora species deduced from rDNA sequence analysis. Mycol. Res. 100: 437–443.
   Google Scholar
• Deahl, A., Goodwin, S. B., Fry, W. E. and Davidse, L. C. 1993. Genotypic diversity of Phytophthora infestans in the Netherlands revealed by DNA polymorphism. Phytopathology 83: 1087–1092.
   Google Scholar
• Erwin, D. C. and Ribeiro, O. K. 1996. Phytophthora Diseases Worldwide. St. Paul, Minnesota: APS Press, 562 p.
   Google Scholar
• Forster, H. and Coffey, M. D. 1993. Molecular taxonomy of Phytophthora megasperma based on mitochondrial and nuclear DNA polymorphisms. Mycol. Res. 97: 1101–1112.
   Google Scholar
• Forster, H., Kinscherf, T. G., Leong, S. A. and Maxwell, D. P 1989. Restriction fragment length polymorphisms of the mitochondrial DNA of Phytophthora megasperma isolated from soybean, alfalfa and fruit trees. Can. J. Bot. 67: 529–537.
   Google Scholar
• Fry, W. E. and Goodwin, S. B. 1997a. Resurgence of the Irish potato famine fungus. Bioscience. 47: 363–371.
   Google Scholar
• Fry, W. E. and Goodwin, S. B. 1997b. Re-emergence of potato and tomato late blight in the United States. Plant Dis. 81: 1349–1357.
   Google Scholar
• Gillespie, B. E., Jayarao, B. M. and Oliver, S. P 1997. Identification of Streptococcus species by randomly amplified polymorphic deoxyribonucleic acid fingerprinting. J. Dairy Sci. 80(3): 471–476.
   Google Scholar
• Goodwin, P H., Kirkpatrick, B. C. and Duniway, J. M. 1989. Cloned DNA probes for identification of Phytophthora parasitica. Phytopathology 79: 716–721.
   Google Scholar
• Gosselin, L., Jobidon, R. and Bemier, L. 1995. Assessment of genetic variation within Chondrostereum purpureum from Quebec by random amplified polymorphic DNA analysis. Mycol. Res. 100: 151–158.
   Google Scholar
• Gregory, P H. 1983. Some major epidemics caused by Phytophthora. In Phytophthora: Its Biology, Taxonomy, Ecology and Pathology (Erwin, D. C., Bartnicki-Garcia, S. and Tsao, P H., Eds.), pp. 271–278. Am. Phytopathol. Soc., St. Paul.
   Google Scholar
• Hane, B. G., Jager, K. and Drexler, H. 1993. The Pearson product moment correlation coefficient is better suited for identification of DNA fingerprint profiles than matching algorithms. Electrophoresis 14: 967–972.
   Google Scholar
• Hansen, E. M. 1991. Variation in the species of the Phytophthora megasperma complex. In Phytophthora (Lucas, J. A., Shattock, R. C., Whaw, D. S. and Cooke, L. R., Eds.), pp. 148–163. Cambridge Univ. Press, Cambridge.
   Google Scholar
• Hansen, E. M., Brasier, C. M., Shaw, D. S. and Hamm, P. B. 1986. The taxonomic structure of Phytophthora megasperma: Evidence for emerging biological species groups. Trans. Br Mycol. Soc. 87: 557–573.
   Google Scholar
• Hong, S. B., Jee, H. J., Kim, S. H. and Go, S. J. 2000. Phylogeny of Korean isolates of Phytophthora species based on sequence analysis of internal transcribed spacer of ribosomal DNA. Plant Pathol. J. 16(1): 29–35.
   Google Scholar
• Hong, S. B., Jee, Lee, S. I. and Go, S. J. 1999. Restriction fragment length polymorphism of PCR amplified ribosomal DNA among Korean isolates of Phytophthora. Plant Pathol. J. 15: 228–235.
   Google Scholar
• Hong, S. B., Jee, Lee, S. I., Ryu, J. C. and Kim, I. S. 1998. Three intraspecific groups in Korean isolates of Phytophthora drechsleri based on PCR-RFLP of ribosomal DNA. Korean J. Plant Pathol. 14: 519–525.
   Google Scholar
• Horner, I. J. and Wilcox, W. F. 1996. Temporal changes in activity and dormant spore populations of Phytophthora cactorum in New York apple orchard soils. Phytopathology 86: 1133–1139.
   Google Scholar
• Hudspeth, D. S. S., Nadler, S. A. and Hudspeth, M. E. S. 2000. A COX2 molecular phylogeny of the Peronosporomycetes. Mycologia. 92: 674–684.
   Google Scholar
• Jee, H. J. 1999. The genus Phytophthora in Korea. Proceeding of Fall Meeting, Korean Society of Plant Pathology. Andong, Korea.
   Google Scholar
• Jee, H. J., Cho, W. D. and Kim, C. H. 2000. Phytophthora Diseases in Korea. Chapter 4: Taxonomy of Phytophthora. pp. 73–84.
   Google Scholar
• Judelson, H. S. and Messenger-Routh, B. 1996. Quantitation of Phytophthora cinnamomi in avocado roots using a species-specific DNA probe. Phytopathology 86: 763–768.
   Google Scholar
• Kamoun, S., Huitema, E. and Vleeshouwers, V. G. A. A. 1999. Resistance to mmoncetes; a general role for the hypersensitive response? Trends Plant Sci. 4: 196–200.
   Google Scholar
• Kamoun, S. Phytophthora. In Fungal Pathology. Edited by Kronstad J. Dordrecht: Kluwer Academic Publishers. 2000: 237–265.
   Google Scholar
• Kang, H. W., Go, S. J. and Kwon, S. W. 1998. Specific detection of Erwinia carotovora subsp. carotovora by DNA probe selected from PCR polymorphic bands. Korean J. Plant Pathol. 14: 161–170.
   Google Scholar
• Kang, H. W., Go, S. J., Ryu, J. C., Kim, K. T. and Eun, M. Y 2000. Fingerprinting genomes of various organisms using PCR with URP primers developed from repetitive sequence of rice. Plant and Animal Genome VIII. Town & Country Hotel. San Diego, CA, U.S.A Final abstract Guide. 190 p.
   Google Scholar
• Kelly, A., Alcala-Jimenez, A. R., Bainbridge, B. W., Heale, J. B., Perez-Artes, E. and Jimemez-Diaz, R. M. 1994. Use of genetic fingerprinting and random amplified polymorphic DNA to characterize pathotypes of Fusarium oxysporum f. sp. cciceris infecting chickpea. Phytopathology 84: 1293–1208.
   Google Scholar
• Kumar, S. and Rzhetsky, A. 1996. Evolutionary relationships of eukaryotic kingdoms. J. Mol. Evol. 42: 183–193.
   Google Scholar
• Lang, B. F., Sief, E., Gray, M. W., O’Kelly, C. J. and Burger, G. 1999. A comparative genomics approach to the evolution of eukaryotes and their mitochondria. J. Eukaryot Microbiol. 46: 320–326.
   Google Scholar
• Leclerc, M. C., Guillot, J. and Deville, M. 2000. Taxonomic and phylogenetic analysis of Saprolegniaceae (Oomycetes) inferred from LSU rDNA and ITS sequence comparisons. Antonie van Leuwenhoek. 77: 369–377.
   Google Scholar
• Lee, S. B. and Taylor, J. W. 1990. Isolation of DNA from fungal mycelia and single spores. In: PCR protocols, A guide to methods and applications ed. by Innis MA, Gelfand DH, Sninsky JJ, White TJ. pp. 282–287, Academic Press, San Diego, CA, USA.
   Google Scholar
• Lee, S. B., White, T. J. and Taylor, J. W. 1993. Detection of Phytophthora species by oligonucleotide hybridization to amplified ribosomal DNA spacers. Phytopathology 83: 177–181.
   Google Scholar
• Margulis, L., Schwartz, K. V. Five Kingdoms: An Illustrated Guide to the Phyla of Life on Earth. New York: WH Freeman and Co., 2000.
   Google Scholar
• Miller, S. A. 1996. Detecting propagules of plant pathogenic fungi. Adv. Bot. Res. 23: 73–102.
   Google Scholar
• Miller, S. A., Madden, L. V. and Schmitthenner, A. F. 1997. Distribution of Phytophthora spp. in field soils determined by immunoassay. Phytopathology 87: 101–107.
   Google Scholar
• Mills, S. C., Forster, H. and Coffey, M. D. 1991. Taxonomic structure of Phytophthora cryptogea and P. drechsleri based on isozyme and mitochondrial DNA analyses. Mycol. Res. 95: 31–48.
   Google Scholar
• Newhook, F. J., Waterhouse, G. M. and Stamps, D. J. 1978. Tabular key to the species of Phytophthora DE BARY Mycological paper. 143. Kew: Commonwealth Mycological Institute. 20 p.
   Google Scholar
• Oudemans, P., Forster, H. and Coffey, M. D. 1994. Evidence for distinct isozyme subgroups within Phytophthora citricola and close relationships with P. capsici and P. citrophthora. Mycol. Res. 98: 189–199.
   Google Scholar
• Paquin, B., Laforest, M. J., Forget, L., Roewer, I., Wang, Z., Longcore, J. and Lang, B. F. 1997. The fungal mitochondrial genome project: evolution of fungal mitochondrial genomes and their gene expression. Curr. Genet. 31: 380–395.
   Google Scholar
• Pearson, L. 1926. On the coefficient of racial likeness. Biometrika 8: 105–117.
   Google Scholar
• Rademaker, J. L. W. and De Bruijn, F. J. 1997. Characterization and classification of microbes by rep-PCR genomic fingerprinting and computer-assisted pattern analysis. In DNA markers: protocols, applications and overviews. Edited by Caetano-Anolles G, Gresshoff PM. John Wiley & Sons, New York. pp. 151–171.
   Google Scholar
• Riethmuller, A., Weiss, M. and Oberwinkler, F. 1999. Phylogenetic studies of Saprolegniomycetidae and related groups based on nuclear large subunit ribosomal DNA sequences. Can. J. Bot. 77: 1790–1800.
   Google Scholar
• Sneath, P H. A. and Sokal, R. R. 1973. Numerical taxonomy. Freeman, San Francisco.
   Google Scholar
• Stamps, D. J., Waterhouse, G. M., Newhook, F. J. and Hall, G. S. 1990. Revised tabular key to the species of Phytophthora. 2nd ed., Mycological Papers 162. Wallingford, Oxfordshire, England: CAB International Mycological Institute. 28 p.
   Google Scholar
• Tsao, P. H. 1983. Factors affecting isolation and quantitation of Phytophthora from soil. In: Phytophthora. Its biology, taxonomy, ecology, and pathology. Ed. by Erwin DC.; Bartnicky Garcia S, Tsao PH. St Paul MN: The American Phytopathological Society. pp. 219–236.
   Google Scholar
• Tsao, P. H. 1990. Why many Phytophthora root rots and crown rots of tree and horticultural crops remain undetected. Bull. Oepp/Eppo Bull. 20: 11–17.
   Google Scholar
• van de Peer, Y. and de Wachter, R. 1997. Evolutionary relationships among the eukaryotic crown taxa taking into account site-to-site rate variation in 18S rRNA. J. Mol. Evol. 45: 619–630.
   Google Scholar
• Williams, J. G. K., Kubelik, A. R., Livak, K. J., Rafalski, J. A. and Tingey, S. V. 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucl. Acids Res. 18: 6531–6535.
   Google Scholar
• Wills, R. T. 1993. The ecological impact of Phytophthora cinnamomi in the Stirling Range National Park, Western Australia. Aust. J. Ecol. 18: 145–189.
   Google Scholar
• Zentmyer, G. A. 1983. The world of Phytophthora. In Phytophthora: Its Biology, Taxonomy, Ecology and Pathology (Erwin, D. C., Bartnicki Garcia, S. and Tsao, P. H., Eds.), pp. 1–8. Am. Phytopatol. Soc., St. Paul.
   Google Scholar