Supplemental material
Emerging Microbes & Infections
Volume 5, 2016 - Issue 1
Related Research Data
Evolutionary changes of the novel Influenza D virus hemagglutinin-esterase fusion gene revealed by the codon usage pattern.
Source:
Taylor & Francis
Zika virus: following the path of dengue and chikungunya?
Source:
Elsevier BV
Emerging arboviruses in the Pacific.
Source:
Elsevier BV
Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes.
Source:
HAL CCSD
Codon Usage Bias Analysis of Citrus tristeza Virus: Higher Codon Adaptation to Citrus reticulata Host.
Source:
Multidisciplinary Digital Publishing Institute
Codon usage bias and recombination events for neuraminidase and hemagglutinin genes in Chinese isolates of influenza A virus subtype H9N2.
Source:
Springer Science and Business Media LLC
An evolutionary perspective on synonymous codon usage in unicellular organisms
Source:
Springer Science and Business Media LLC
Comparative genomic analysis of pre-epidemic and epidemic Zika virus strains for virological factors potentially associated with the rapidly expanding epidemic
Source:
Informa UK Limited
An Evolutionary Insight into Zika Virus Strains Isolated in the Latin American Region
Source:
Multidisciplinary Digital Publishing Institute
Analysis of synonymous codon usage in SARS Coronavirus and other viruses in the Nidovirales.
Source:
Elsevier BV
History and emergence of Zika virus.
Source:
Oxford University Press (OUP)
Analysis of Nipah Virus Codon Usage and Adaptation to Hosts.
Source:
Frontiers Media SA
Genome-wide analysis of codon usage bias in Ebolavirus.
Source:
Elsevier BV
Codon adaptation index as a measure of dominating codon bias.
Source:
Oxford University Press (OUP)
Guillain-Barré Syndrome outbreak associated with Zika virus infection in French Polynesia: a case-control study
Source:
HAL CCSD
Full-length sequencing and genomic characterization of Bagaza, Kedougou, and Zika viruses.
Source:
Springer Science and Business Media LLC
Codon catalog usage and the genome hypothesis.
Source:
HAL CCSD
GenBank
Source:
Oxford University Press (OUP)
Variation in G + C-content and codon choice: differences among synonymous codon groups in vertebrate genes.
Source:
Oxford University Press
Urbanization increases Aedes albopictus larval habitats and accelerates mosquito development and survivorship.
Source:
Public Library of Science (PLoS)
Insights into the genetic and host adaptability of emerging porcine circovirus 3
Source:
Informa UK Limited
Comparison and Phylogenetic Analysis of Chloroplast Genomes of Three Medicinal and Edible Amomum Species.
Source:
Multidisciplinary Digital Publishing Institute
Codon usage tabulated from international DNA sequence databases: status for the year 2000
Source:
Oxford University Press (OUP)
ViPR: an open bioinformatics database and analysis resource for virology research
Source:
Oxford University Press (OUP)
Zika Virus as an Emerging Neuropathogen: Mechanisms of Neurovirulence and Neuro-Immune Interactions.
Source:
Springer Science and Business Media LLC
Intrastrand parity rules of DNA base composition and usage biases of synonymous codons.
Source:
Springer Science and Business Media LLC
The characteristics of the synonymous codon usage in enterovirus 71 virus and the effects of host on the virus in codon usage pattern.
Source:
Elsevier BV
HIV Progression Depends on Codon and Amino Acid Usage Profile of Envelope Protein and Associated Host-Genetic Influence.
Source:
Frontiers Media SA
Zika Virus Outbreak, Bahia, Brazil.
Source:
Centers for Disease Control and Prevention (CDC)
Intrastrand parity rules of DNA base composition and usage biases of synonymous codons.
Source:
Springer Science and Business Media LLC
Codon usage in regulatory genes in Escherichia coli does not reflect selection for ‘rare’ codons
Source:
Oxford University Press (OUP)
A detailed comparative analysis on the overall codon usage patterns in West Nile virus.
Source:
Elsevier BV
A single mutation in chikungunya virus affects vector specificity and epidemic potential.
Source:
Public Library of Science (PLoS)
CAIcal: A combined set of tools to assess codon usage adaptation
Source:
Springer Nature
Codon usage bias and the evolution of influenza A viruses. Codon Usage Biases of Influenza Virus.
Source:
Springer Nature
Translation-coupled violation of Parity Rule 2 in human genes is not the cause of heterogeneity of the DNA G+C content of third codon position.
Source:
Elsevier BV
An evaluation of measures of synonymous codon usage bias.
Source:
Springer Science and Business Media LLC
Genetic and codon usage bias analyses of polymerase genes of equine influenza virus and its relation to evolution.
Source:
Springer Science and Business Media LLC
RCDI/eRCDI: a web-server to estimate codon usage deoptimization.
Source:
Springer Nature
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