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Emerging Microbes & Infections Volume 11, 2022 - Issue 1
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Coronaviruses

Dynamics of viral shedding during ancestral or Omicron BA.1 SARS-CoV-2 infection and enhancement of pre-existing immunity during breakthrough infections

Carla Saadea CIRI, Centre International de Recherche en Infectiologie, Team VirPath, Univ Lyon, Inserm, U1111, Université Claude Bernard Lyon 1, CNRS, Lyon, France;b Joint Research Unit Civils Hospices of Lyon-bioMérieux, Civils Hospices of Lyon, Lyon Sud Hospital, Pierre-Bénite, FranceORCID Iconhttps://orcid.org/0000-0001-5964-0588View further author information
ORCID Icon,
Karen Brengel-Pesceb Joint Research Unit Civils Hospices of Lyon-bioMérieux, Civils Hospices of Lyon, Lyon Sud Hospital, Pierre-Bénite, FranceView further author information
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Alexandre Gaymarda CIRI, Centre International de Recherche en Infectiologie, Team VirPath, Univ Lyon, Inserm, U1111, Université Claude Bernard Lyon 1, CNRS, Lyon, France;c Laboratoire de Virologie, Institut des Agents Infectieux, Laboratoire associé au Centre National de Référence des virus des infections respiratoires, Hospices Civils de Lyon, Lyon, FranceView further author information
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Mary-Anne Trabaudc Laboratoire de Virologie, Institut des Agents Infectieux, Laboratoire associé au Centre National de Référence des virus des infections respiratoires, Hospices Civils de Lyon, Lyon, FranceORCID Iconhttps://orcid.org/0000-0001-8614-1071View further author information
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Gregory Destrasa CIRI, Centre International de Recherche en Infectiologie, Team VirPath, Univ Lyon, Inserm, U1111, Université Claude Bernard Lyon 1, CNRS, Lyon, France;c Laboratoire de Virologie, Institut des Agents Infectieux, Laboratoire associé au Centre National de Référence des virus des infections respiratoires, Hospices Civils de Lyon, Lyon, France;d GenEPII sequencing platform, Institut des Agents Infectieux, Hospices Civils de Lyon, Lyon, FranceView further author information
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Guy Oriolb Joint Research Unit Civils Hospices of Lyon-bioMérieux, Civils Hospices of Lyon, Lyon Sud Hospital, Pierre-Bénite, FranceView further author information
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Valérie Cheynetb Joint Research Unit Civils Hospices of Lyon-bioMérieux, Civils Hospices of Lyon, Lyon Sud Hospital, Pierre-Bénite, FranceView further author information
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Marion Debombourgb Joint Research Unit Civils Hospices of Lyon-bioMérieux, Civils Hospices of Lyon, Lyon Sud Hospital, Pierre-Bénite, FranceView further author information
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Bouchra Mokdadb Joint Research Unit Civils Hospices of Lyon-bioMérieux, Civils Hospices of Lyon, Lyon Sud Hospital, Pierre-Bénite, FranceView further author information
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Geneviève Billaudc Laboratoire de Virologie, Institut des Agents Infectieux, Laboratoire associé au Centre National de Référence des virus des infections respiratoires, Hospices Civils de Lyon, Lyon, FranceView further author information
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Antoine Oblettec Laboratoire de Virologie, Institut des Agents Infectieux, Laboratoire associé au Centre National de Référence des virus des infections respiratoires, Hospices Civils de Lyon, Lyon, France;d GenEPII sequencing platform, Institut des Agents Infectieux, Hospices Civils de Lyon, Lyon, FranceView further author information
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Hervé Créhalete Mirialis - Biogroup Auvergne Rhône alpes, Cluses, FranceView further author information
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Jean-Marc Giannolif Dyomédéa-BIOGROUP – Plateau technique de la Sauvegarde, Lyon, FranceView further author information
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Christine Garrigouc Laboratoire de Virologie, Institut des Agents Infectieux, Laboratoire associé au Centre National de Référence des virus des infections respiratoires, Hospices Civils de Lyon, Lyon, FranceView further author information
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Laurence Generenazb Joint Research Unit Civils Hospices of Lyon-bioMérieux, Civils Hospices of Lyon, Lyon Sud Hospital, Pierre-Bénite, FranceView further author information
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Christelle Compagnonb Joint Research Unit Civils Hospices of Lyon-bioMérieux, Civils Hospices of Lyon, Lyon Sud Hospital, Pierre-Bénite, FranceView further author information
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André Boibieuxg Infectious and Tropical Diseases Unit, Hospices Civil de Lyon, Lyon, FranceView further author information
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Bruno Linaa CIRI, Centre International de Recherche en Infectiologie, Team VirPath, Univ Lyon, Inserm, U1111, Université Claude Bernard Lyon 1, CNRS, Lyon, France;c Laboratoire de Virologie, Institut des Agents Infectieux, Laboratoire associé au Centre National de Référence des virus des infections respiratoires, Hospices Civils de Lyon, Lyon, France;d GenEPII sequencing platform, Institut des Agents Infectieux, Hospices Civils de Lyon, Lyon, FranceORCID Iconhttps://orcid.org/0000-0002-8959-2123View further author information
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Florence Morfina CIRI, Centre International de Recherche en Infectiologie, Team VirPath, Univ Lyon, Inserm, U1111, Université Claude Bernard Lyon 1, CNRS, Lyon, France;c Laboratoire de Virologie, Institut des Agents Infectieux, Laboratoire associé au Centre National de Référence des virus des infections respiratoires, Hospices Civils de Lyon, Lyon, France;d GenEPII sequencing platform, Institut des Agents Infectieux, Hospices Civils de Lyon, Lyon, FranceORCID Iconhttps://orcid.org/0000-0002-1962-808XView further author information
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Bruno Pozzettoh Team GIMAP, CIRI—Centre International de Recherche en Infectiologie, Université Jean Monnet de Saint-Etienne, Université Claude Bernard Lyon 1, Inserm, U1111, CNRS, Saint-Etienne, France;i Laboratoire des Agents Infectieux, Centre Hospitalier Universitaire de Saint-Étienne, Saint-Etienne, FranceView further author information
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Laurence Josseta CIRI, Centre International de Recherche en Infectiologie, Team VirPath, Univ Lyon, Inserm, U1111, Université Claude Bernard Lyon 1, CNRS, Lyon, France;c Laboratoire de Virologie, Institut des Agents Infectieux, Laboratoire associé au Centre National de Référence des virus des infections respiratoires, Hospices Civils de Lyon, Lyon, France;d GenEPII sequencing platform, Institut des Agents Infectieux, Hospices Civils de Lyon, Lyon, FranceORCID Iconhttps://orcid.org/0000-0002-7158-1186View further author information
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Sophie Trouillet Assanta CIRI, Centre International de Recherche en Infectiologie, Team VirPath, Univ Lyon, Inserm, U1111, Université Claude Bernard Lyon 1, CNRS, Lyon, France;b Joint Research Unit Civils Hospices of Lyon-bioMérieux, Civils Hospices of Lyon, Lyon Sud Hospital, Pierre-Bénite, France;c Laboratoire de Virologie, Institut des Agents Infectieux, Laboratoire associé au Centre National de Référence des virus des infections respiratoires, Hospices Civils de Lyon, Lyon, FranceORCID Iconhttps://orcid.org/0000-0001-6439-4705View further author information
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Antonin Bala CIRI, Centre International de Recherche en Infectiologie, Team VirPath, Univ Lyon, Inserm, U1111, Université Claude Bernard Lyon 1, CNRS, Lyon, France;c Laboratoire de Virologie, Institut des Agents Infectieux, Laboratoire associé au Centre National de Référence des virus des infections respiratoires, Hospices Civils de Lyon, Lyon, France;d GenEPII sequencing platform, Institut des Agents Infectieux, Hospices Civils de Lyon, Lyon, FranceCorrespondence[email protected]
ORCID Iconhttps://orcid.org/0000-0002-0261-2495View further author information
ORCID Icon show all
Pages 2423-2432 | Received 18 May 2022, Accepted 04 Sep 2022, Published online: 26 Oct 2022

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Dynamics of viral shedding during ancestral or Omicron BA.1 SARS-CoV-2 infection and enhancement of pre-existing immunity during breakthrough infections
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