Journal of Biomolecular Structure and Dynamics, Volume 23, Issue 2 (2005)

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Journal of Biomolecular Structure and Dynamics, Volume 23, Issue 2 (2005)

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Original Articles

Article
Secondary Structure and Dynamics of an Intrinsically Unstructured Linker Domain
Katie E. Olson, Pranesh Narayanaswami, Pamela D. Vise, David F. Lowry, Marc S. Wold & Gary W. Daughdrill
Pages: 113-124
Published online: 15 May 2012
AbstractforSecondary Structure and Dynamics of an Intrinsically Unstructured Linker Domain | Full Text | References | PDF (1.5 MB)
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Article
Conformational Studies of Two Bradykinin Antagonists by Using Two-dimensional NMR Techniques and Molecular Dynamics Simulations
E. Sikorska (née Trzepałka)R. Ślusarz & B. Lammek
Pages: 125-134
Published online: 15 May 2012
AbstractforConformational Studies of Two Bradykinin Antagonists by Using Two-dimensional NMR Techniques and Molecular Dynamics Simulations | Full Text | References | PDF (1.1 MB)
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Article
On the Ewald Artifacts in Computer Simulations. The Test-Case of the Octaalanine Peptide With Charged Termini
Marcos Ariel Villarreal & Guillermo Gabriel Montich
Pages: 135-142
Published online: 15 May 2012
AbstractforOn the Ewald Artifacts in Computer Simulations. The Test-Case of the Octaalanine Peptide With Charged Termini | References | PDF (1.3 MB)
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Article
The Most Deviated Codon Position in AT-rich Bacterial Genomes: A Function Related Analysis
Bin-Guang Ma & Ling-Ling Chen
Pages: 143-149
Published online: 15 May 2012
AbstractforThe Most Deviated Codon Position in AT-rich Bacterial Genomes: A Function Related Analysis | References | PDF (1.9 MB)
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Article
Long-range Electrostatic Interactions in Molecular Dynamics: An Endothelin-1 Case Study
Eva Fadrná, Klára Hladečková & Jaroslav Koča
Pages: 151-162
Published online: 24 Jul 2012
AbstractforLong-range Electrostatic Interactions in Molecular Dynamics: An Endothelin-1 Case Study | References | PDF (1.9 MB)
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Open Access
Article
Homology Models of the Yersinia Pseudotuberculosis and Yersinia Pestis General Porins and Comparative Analysis of Their Functional and Antigenic Regions
G. N. Likhatskaya, T. F. Solov'eva, O. D. Novikova, M. P. Issaeva, K. V. Gusev, I. B. Kryzhko, E. V. Trifonov & E. A. Nurminski
Pages: 163-174
Published online: 15 May 2012
AbstractforHomology Models of the Yersinia Pseudotuberculosis and Yersinia Pestis General Porins and Comparative Analysis of Their Functional and Antigenic Regions | References | PDF (1.6 MB)
  • 38 Views
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Article
Is the Fab-Fragment from Monoclonal Rheumatoid IgM Flexible? A Spin Label Dynamics Study
V. P. Timofeev, Ya. V. Tkachev, V. V. Novikov, V. A. Alyoshkin & V. A. Lapuk
Pages: 175-181
Published online: 15 May 2012
AbstractforIs the Fab-Fragment from Monoclonal Rheumatoid IgM Flexible? A Spin Label Dynamics Study | Full Text | References | PDF (458.8 KB)
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Article
Binding and Folding of Melittin in the Presence of Ganglioside GM1 Micelles
Chiradip Chatterjee & Chaitali Mukhopadhyay
Pages: 183-192
Published online: 15 May 2012
AbstractforBinding and Folding of Melittin in the Presence of Ganglioside GM1 Micelles | Full Text | References | PDF (796.9 KB)
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Article
Sequence-Specific Minor Groove Binding Ligands as Potential Regulators of Gene Expression in Xenopus Laevis Oocytes
S. V. Belikov, S. L. Grokhovsky, M. G. Isaguliants, A. N. Surovaya & G. V. Gursky
Pages: 193-202
Published online: 15 May 2012
AbstractforSequence-Specific Minor Groove Binding Ligands as Potential Regulators of Gene Expression in Xenopus Laevis Oocytes | References | PDF (1.7 MB)
  • 21 Views
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Article
Molecular Dynamics and Free Energy Calculations of the B and Z Forms of C8-Arylguanine Modified Oligonucleotides
Sue Heavner & Peter M. Gannett
Pages: 203-219
Published online: 15 May 2012
AbstractforMolecular Dynamics and Free Energy Calculations of the B and Z Forms of C8-Arylguanine Modified Oligonucleotides | References | PDF (4.3 MB)
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Article
Comparative Analyses of Codon and Amino Acid Usage in Symbiotic Island and Core Genome in Nitrogen-Fixing Symbiotic Bacterium Bradyrhizobium japonicum
Sabyasachi Das, Archana Pan, Sandip Paul & Chitra Dutta
Pages: 221-232
Published online: 15 May 2012
AbstractforComparative Analyses of Codon and Amino Acid Usage in Symbiotic Island and Core Genome in Nitrogen-Fixing Symbiotic Bacterium Bradyrhizobium japonicum | References | PDF (2.1 MB)
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