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Expert Review of Proteomics Volume 10, 2013 - Issue 6
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Protein–protein interaction networks studies and importance of 3D structure knowledge

Hui-Chun LuRandall Division of Cell and Molecular Biophysics, King’s College London, New Hunt’s House, London SE1 1UL, UK
,
Arianna ForniliRandall Division of Cell and Molecular Biophysics, King’s College London, New Hunt’s House, London SE1 1UL, UK
&
Franca FraternaliRandall Division of Cell and Molecular Biophysics, King’s College London, New Hunt’s House, London SE1 1UL, UKCorrespondence[email protected]
Pages 511-520 | Published online: 09 Jan 2014

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Emily H Bowler, Zhenghe Wang & Rob M Ewing. (2015) How do oncoprotein mutations rewire protein–protein interaction networks?. Expert Review of Proteomics 12:5, pages 449-455.
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Yekai Zhou, Hongjun Chen, Sida Li & Ming Chen. (2021) mPPI: a database extension to visualize structural interactome in a one-to-many manner. Database 2021.
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Sun Sook Chung, Joseph C F Ng, Anna Laddach, N Shaun B Thomas & Franca Fraternali. (2021) Short loop functional commonality identified in leukaemia proteome highlights crucial protein sub-networks. NAR Genomics and Bioinformatics 3:1.
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Sylvie Ricard-Blum & Adriana E. Miele. (2020) Omic approaches to decipher the molecular mechanisms of fibrosis, and design new anti-fibrotic strategies. Seminars in Cell & Developmental Biology 101, pages 161-169.
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Lea Albert, Alberto Peñalver, Nemanja Djokovic, Laura Werel, Malte Hoffarth, Dusan Ruzic, Jing Xu, Lars‐Oliver Essen, Katarina Nikolic, Yali Dou & Olalla Vázquez. (2019) Modulating Protein–Protein Interactions with Visible‐Light‐Responsive Peptide Backbone Photoswitches. ChemBioChem 20:11, pages 1417-1429.
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Abhijeet R. Sonawane, Scott T. Weiss, Kimberly Glass & Amitabh Sharma. (2019) Network Medicine in the Age of Biomedical Big Data. Frontiers in Genetics 10.
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Nathalie Lagarde, Alessandra Carbone & Sophie Sacquin‐Mora. (2018) Hidden partners: Using cross‐docking calculations to predict binding sites for proteins with multiple interactions. Proteins: Structure, Function, and Bioinformatics 86:7, pages 723-737.
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Hui-Chun Lu, Julián Herrera Braga & Franca Fraternali. (2016) PinSnps: structural and functional analysis of SNPs in the context of protein interaction networks. Bioinformatics 32:16, pages 2534-2536.
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Hui-Chun Lu, Sun Sook Chung, Arianna Fornili & Franca Fraternali. (2015) Anatomy of protein disorder, flexibility and disease-related mutations. Frontiers in Molecular Biosciences 2.
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Rob M Ewing & Declan A Doyle. 2005. Encyclopedia of Life Sciences. Encyclopedia of Life Sciences 1 7 .
Zhu-Hong You, Keith C. C. Chan & Pengwei Hu. (2015) Predicting Protein-Protein Interactions from Primary Protein Sequences Using a Novel Multi-Scale Local Feature Representation Scheme and the Random Forest. PLOS ONE 10:5, pages e0125811.
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Sun Sook Chung, Alessandro Pandini, Alessia Annibale, Anthony C. C. Coolen, N. Shaun B. Thomas & Franca Fraternali. (2015) Bridging topological and functional information in protein interaction networks by short loops profiling. Scientific Reports 5:1.
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Gloria Uccello-Barretta, Federica Balzano, Federica Aiello, Letizia Vanni, Mattia Mori, Sergio Menta, Andrea Calcaterra & Bruno Botta. (2015) Hydrolytic inhibition of α-chymotrypsin by 2,8,14,20-tetrakis( d -leucyl- d -valinamido)resorc[4]arenecarboxylic acid: a spectroscopic NMR and computational combined approach . Organic & Biomolecular Chemistry 13:3, pages 916-924.
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Lech-Gustav Milroy, Tom N. Grossmann, Sven Hennig, Luc Brunsveld & Christian Ottmann. (2014) Modulators of Protein–Protein Interactions. Chemical Reviews 114:9, pages 4695-4748.
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John P. Bowman. 2014. Applications of Advanced Omics Technologies: From Genes to Metabolites. Applications of Advanced Omics Technologies: From Genes to Metabolites 157 200 .

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