Metabolomics-based studies in the field of Leishmania/leishmaniasisFootnote

Peer review under responsibility of Alexandria University Faculty of Medicine.

Footnote

Available online 2 July 2018

References

• N.A.D.AtanM.KoushkiM.R.TaviraniN.A.AhmadiProtein-protein interaction network analysis of salivary proteomic data in oral cancer casesAsian Pac J Cancer Prv19201816391645
   PubMedGoogle Scholar
• F.S.SadjjadiM.Rezaie-TaviraniN.A.AhmadiS.M.SadjjadiH.ZaliProteome evaluation of human cystic echinococcosis sera using two dimensional gel electrophoresisGastroenterol Hepatol Bed Bench1120187582
   PubMedGoogle Scholar
• K.A.StringerR.T.McKayA.KarnovskyB.QuémeraisP.LacyMetabolomics and its application to acute lung diseasesFront Immunol7201622 p
   Web of Science ®Google Scholar
• M.Rezaei-TaviraniF.FathiF.DarvizehAdvantage of applying OSC to 1H NMR-based metabonomic data of celiac diseaseInt J Endocrinol Metab102012548552
   PubMedGoogle Scholar
• A.SafaeiA.A.OskouieS.R.MohebbiMetabolomic analysis of human cirrhosis, hepatocellular carcinoma, non-alcoholic fatty liver disease and non-alcoholic steatohepatitis diseasesGastroenterol Hepatol Bed Bench92016158173
   PubMedGoogle Scholar
• G.J.PattiO.YanesG.SiuzdakInnovation: metabolomics: the apogee of the omics trilogyNat Rev Mol Cell Biol132012263269
   PubMed Web of Science ®Google Scholar
• D.S.WishartComputational approaches to metabolomics. Bioinformatics methods in clinical researchMethods Mol Biol2010283313
   PubMedGoogle Scholar
• J.XiaD.I.BroadhurstM.WilsonD.S.WishartTranslational biomarker discovery in clinical metabolomics: an introductory tutorialMetabolomics92013280299
   PubMed Web of Science ®Google Scholar
• N.A.AhmadiM.ModiriS.MamdohiFirst survey of cutaneous leishmaniasis in Borujerd county, western Islamic Republic of IranEast Mediterr Health J192013847853
   PubMed Web of Science ®Google Scholar
• J.-C.DujardinStructure, dynamics and function of Leishmania genome: resolving the puzzle of infection, genetics and evolution?Infect Genet Evol92009290297
   PubMed Web of Science ®Google Scholar
• World Health OrganizationReport of the consultative meeting on cutaneous leishmaniasis2008WHOGeneva31
   Google Scholar
• S.KumariA.KumarM.SamantN.SinghA.DubeDiscovery of novel vaccine candidates and drug targets against visceral leishmaniasis using proteomics and transcriptomicsCurr Drug Targets92008938947
   PubMed Web of Science ®Google Scholar
• S.SundarDrug resistance in Indian visceral leishmaniasisTM & IH62001849854
   Web of Science ®Google Scholar
• S.GoyardH.SegawaJ.GordonAn in vitro system for developmental and genetic studies of Leishmania donovani phosphoglycansMol Biochem Parasitol13020033142
   PubMed Web of Science ®Google Scholar
• F.McNicollJ.DrummelsmithM.MüllerA combined proteomic and transcriptomic approach to the study of stage differentiation in Leishmania infantumProteomics6200635673581
   PubMed Web of Science ®Google Scholar
• L.ZhangE.HatzakisA.D.PattersonNMR-based metabolomics and its application in drug metabolism and cancer researchCurr Pharmacol Rep22016231240
   Google Scholar
• A.M.SliszA.P.BreksaIIID.O.MishchukG.McCollumC.M.SlupskyMetabolomic analysis of citrus infection by ‘Candidatus Liberibacter’ reveals insight into pathogenicityJ Proteome Res11201242234230
   PubMed Web of Science ®Google Scholar
• N.L.KuehnbaumP.Britz-McKibbinNew advances in separation science for metabolomics: resolving chemical diversity in a post-genomic eraChem Rev113201324372468
   PubMed Web of Science ®Google Scholar
• B.F.NobakhtR.AliannejadM.Rezaei-TaviraniS.TaheriA.A.OskouieThe metabolomics of airway diseases, including COPD, asthma and cystic fibrosisBiomarkers202015516
   PubMed Web of Science ®Google Scholar
• Ah.ZhangH.SunS.QiuX.J.WangNMR-based metabolomics coupled with pattern recognition methods in biomarker discovery and disease diagnosisMagn Reson Chem5120135491456
   PubMed Web of Science ®Google Scholar
• J.K.NicholsonJ.C.LindonSystems biology: metabonomicsNature455200810541056
   PubMed Web of Science ®Google Scholar
• M.ScholzS.GatzekA.SterlingO.FiehnJ.SelbigMetabolite fingerprinting: detecting biological features by independent component analysisBioinformatics20200424472454
   PubMed Web of Science ®Google Scholar
• B.F.NobakhtR.AliannejadM.Rezaei-TaviraniNMR-and GC/MS-based metabolomics of sulfur mustard exposed individuals: a pilot studyBiomarkers212016479489
   PubMed Web of Science ®Google Scholar
• A.AlonsoS.MarsalA.JuliàAnalytical methods in untargeted metabolomics: state of the art in 2015Front Bioeng Biotechnol32015120
   PubMed Web of Science ®Google Scholar
• H.G.GikaG.A.TheodoridisR.S.PlumbI.D.WilsonCurrent practice of liquid chromatography–mass spectrometry in metabolomics and metabonomicsJ Pharm Biomed Anal8720141225
   PubMed Web of Science ®Google Scholar
• K.M.SasA.KarnovskyG.MichailidisS.PennathurMetabolomics and diabetes: analytical and computational approachesDiabetes642015718732
   PubMed Web of Science ®Google Scholar
• N.J.SerkovaT.J.StandifordK.A.StringerThe emerging field of quantitative blood metabolomics for biomarker discovery in critical illnessesAm J Respir Crit Care Med1842011647655
   PubMed Web of Science ®Google Scholar
• O.A.JonesMetabolomics and systems biology in human health and medicine2014Cabi
   Google Scholar
• ZhangA-hH.SunYanG-lY.YuanY.HanX-j.WangMetabolomics study of type 2 diabetes using ultra-performance LC-ESI/quadrupole-TOF high-definition MS coupled with pattern recognition methodsJ Physiol Biochem702014117128
   PubMed Web of Science ®Google Scholar
• F.García-AlcaldeF.García-LópezJ.DopazoA.ConesaPaintomics: a web based tool for the joint visualization of transcriptomics and metabolomics dataBioinformatics272010137139
   PubMed Web of Science ®Google Scholar
• A.KarnovskyT.WeymouthT.HullMetscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression dataBioinformatics282011373380
   PubMed Web of Science ®Google Scholar
• A.K.ChavaliJ.D.WhittemoreJ.A.EddyK.T.WilliamsJ.A.PapinSystems analysis of metabolism in the pathogenic trypanosomatid Leishmania majorMol Syst Biol42008177
   PubMed Web of Science ®Google Scholar
• M.ArjmandA.MadrakianG.KhaliliA.NajafiZ.ZamaniZ.AkbariMetabolomics-based study of logarithmic and stationary phases of promastigotes in Leishmania major by 1H NMR spectroscopyIran Biomed J2020167783
   PubMedGoogle Scholar
• F.R.OpperdoesG.H.CoombsMetabolism of Leishmania: proven and predictedTrends Parasitol232007149158
   PubMed Web of Science ®Google Scholar
• J.BlumEffects of culture age and hexoses on fatty acid oxidation by Leishmania majorJ Eukaryot Microbiol371990505510
   Google Scholar
• M.Beigi BoroujeniM.ArjmandG.KhaliliZ.AkbariA.NajafiA.ShafieiThe metabonomic changes of leishmania major, s promastigotes (fredlin strain) after in vitro artemisinin treatment at stationary phaseKoomesh1620149096
   Google Scholar
• S.D.LamourB.-S.ChoiH.C.KeunI.MüllerJ.SaricMetabolic characterization of Leishmania major infection in activated and nonactivated macrophagesJ Proteome Res11201242114222
   PubMed Web of Science ®Google Scholar
• N.GuptaN.GoyalU.SinghaV.BhakuniR.RoyA.RastogiCharacterization of intracellular metabolites of axenic amastigotes of Leishmania donovani by 1H NMR spectroscopyActa Tropica731999121133
   PubMed Web of Science ®Google Scholar
• M.TafazzoliF.FathiF.DarvizehZ.ZamaniF.PourfallahA metabonomic study on samples of cutaneous leishmaniasis and its correlation with the selenium level in the blood serumJ Mol Biomark Diagn12010101
   Google Scholar
• P.M.RaineyN.E.MacKenzieA carbon-13 nuclear magnetic resonance analysis of the products of glucose metabolism in Leishmania pifanoi amastigotes and promastigotesMol Biochem Parasitol451991307315
   PubMed Web of Science ®Google Scholar
• S.AkpunarlievaS.WeidtD.LamasudinIntegration of proteomics and metabolomics to elucidate metabolic adaptation in LeishmaniaJ Proteomics15520178598
   PubMed Web of Science ®Google Scholar
• G.D.WestropR.A.WilliamsL.WangMetabolomic analyses of Leishmania reveal multiple species differences and large differences in amino acid metabolismPloS One102015e0136891
   PubMed Web of Science ®Google Scholar
• I.M.VincentS.WeidtL.RivasK.BurgessT.K.SmithM.OuelletteUntargeted metabolomic analysis of miltefosine action in Leishmania infantum reveals changes to the internal lipid metabolismInt J Parasitol Drugs Drug Resist420142027
   PubMed Web of Science ®Google Scholar
• M.BergM.VanaerschotA.JankevicsMetabolic adaptations of Leishmania donovani in relation to differentiation, drug resistance, and drug pressureMol Microbiol902013428442
   PubMed Web of Science ®Google Scholar
• A.M.SilvaA.Cordeiro-da-SilvaG.H.CoombsMetabolic variation during development in culture of Leishmania donovani promastigotesPLoS Negl Trop Dis52011e1451
   Web of Science ®Google Scholar
• R.t’KindtA.JankevicsR.A.ScheltemaTowards an unbiased metabolic profiling of protozoan parasites: optimisation of a Leishmania sampling protocol for HILIC-orbitrap analysisAnal Bioanal Chem398201020592069
   PubMed Web of Science ®Google Scholar
• D.P.De SouzaE.C.SaundersM.J.McConvilleV.A.LikićProgressive peak clustering in GC-MS metabolomic experiments applied to Leishmania parasitesBioinformatics22200613911396
   PubMed Web of Science ®Google Scholar