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Original Article

Molecular mycology: DNA probes and applications of PCR technology

, , , &
Pages 351-366 | Published online: 09 Jul 2009

REFERENCES

  • Borenzstein L., Hatin I., Simonpoli A.M., Ugarte E., Girard P.M., Jaureguiberry G. An alternative to DNA extraction for the diagnosis of Pneumocystis carinii by polymerase chain reaction using a new oligonucleotide probe. Molecular and Cellular Probes 1992; 6: 361–365
  • Bowman B.H. A model PCR/probe system for the identification of fungal pathogens. Diagnostic Molecular Microbiology, Principles and Applications, D.H. Persing, T.F. Smith, F.C. Tenover, T.J. White. American Society for Microbiology, Washington, DC 1993; 423–430, In
  • Buchman T.G., Rossier M., Merz W.G., Charache P. Detection of surgical pathogens by in vitro DNA amplification. I. Rapid identification of Candida albicans by in vitro amplification of a fungus-specific gene. Surgery 1990; 108: 338–347
  • Crampin A.C., Matthews R.C. Application of the polymerase chain reaction to the diagnosis of candidosis by amplification of an HSP 90 gene fragment. Journal of Medical Microbiology 1993; 39: 233–238
  • Gardes M., White T.J., Fortin J.A., Bruns T.D., Taylor J.W. Identification of indigenous and introduced symbiotic fungi in ectomycorrhizae by amplification of nuclear and mitochondrial ribosomal DNA. Canadian Journal of Botany 1991; 69: 180–190
  • Gargas A., Taylor J.W. Polymerase chain reaction (PCR) primers for amplifying and sequencing nuclear 18S rDNA from lichenized fungi. Mycologia 1992; 84: 589–592
  • Garrett C.T., Rodriguez E.R., Comerford J., Sarago C. Establishing a molecular diagnostics laboratory. Advances in Pathology and Laboratory Medicine 1992; 5: 35–50
  • Hall G.S., Pratt-Rippin K., Washington J.A. Evaluation of a chemiluminescent probe assay for identification of Histoplasma capsulatum isolates. Journal of Clinical Microbiology 1992; 30: 3003–3004
  • Holmes A.R., Cannon R.D., Shepherd M.G., Jenkinson H.F. Detection of Candida albicans and other yeasts in blood by PCR. Journal of Clinical Microbiology 1994; 32: 228–231
  • Holmes A.R., Lee Y.C., Cannon R.D., Jenkinson H.F., Shepherd M.G. Yeast-specific DNA probes and their application for the detection of Candida albicans. Journal of Medical Microbiology 1992; 37: 346–351
  • Hopfer R.L., Walden P., Setterquist S., Highsmith W.E. Detection and differentiation of fungi in clinical specimens using polymerase chain reaction (PCR) amplification and restriction enzyme analysis. Journal of Medical and Veterinary Mycology 1993; 31: 65–75
  • Kan V.L. Polymerase chain reaction for the diagnosis of candidemia. Journal of Infectious Diseases 1993; 168: 779–783
  • Kitada K., Oka S., Kimura S., Shimada K., Serikawa T., Yamada J., Tsunoo H., Egawa K., Nakamura Y. Detection of Pneumocystis carinii sequences by polymerase chain reaction: Animal models and clinical application to noninvasive specimens. Journal of Clinical Microbiology 1991; 29: 1985–1993
  • Lee S.B., White T.J., Taylor J.W. Detection of Phytophthora species by oligonucleotide hybridization to amplified ribosomal DNA spacers. Phytopathology 1993; 83: 177–181
  • Leigh T.R., Kangro H.O., Gazzard B.G., Jeffries D.J., Collins J.V. DNA amplification by the polymerase chain reaction to detect sub-clinical Pneumocystis carinii colonization in HIV-positive and HIV-negative male homosexuals with and without respiratory symptoms. Respiratory Medicine 1993; 87: 525–529
  • Lipschik G.Y., Gill V.J., Lundgren J.D., Andrawis V.A., Nelson N.A., Nielsen J.O., Ognibene F.P., Kovacs J.A. Improved diagnosis of Pneumocystis carinii infection by polymerase chain reaction on induced sputum and blood. Lancet 1992; 340: 203–206
  • Meyer W., Koch A., Niemann C., Beyermann B., Epplen J.T., Börner T. Differentiation of species and strains among filamentous fungi by DNA fingerprinting. Current Genetics 1991; 19: 239–242
  • Meyer W., Lieckfeldt E., Kuhls K., Freedman E.Z., Börner T., Mitchell T.G. DNA-and PCR-fingerprinting in fungi. DNA Fingerprinting: State of the Science, S.D.J. Pena, R. Chakraborty, J.T. Epplen, A.J. Jeffreys. Birkhäuser Verlag, Basel 1993; 311–320, In
  • Meyer W., Mitchell T.G., Freedman E.Z., Vilgalys R.J. Hybridization probes for conventional DNA fingerprinting used as single primers in the polymerase chain reaction to distinguish strains of Cryptococcus neoformans. Journal of Clinical Microbiology 1993; 31: 2274–2280
  • Mitchell T.G., Freedman E.Z., Meyer W., White T.J., Taylor J.W. PCR Identification of Cryptococcus neoformans. Diagnostic Molecular Microbiology. Principles and Applications, D.H. Persing, T.F. Smith, F.C. Tenover, T.J. White. American Society for Microbiology, Washington, DC 1993; 431–436, In
  • Miyakawa Y., Mabuchi T., Fukazawa Y. New method for detection of Candida albicans in human blood by polymerase chain reaction. Journal of Clinical Microbiology 1993; 31: 3344–3347
  • Miyakawa Y., Mabuchi T., Kagaya K., Fukazawa Y. Isolation and characterization of a species-specific DNA fragment for detection of Candida albicans by polymerase chain reaction. Journal of Clinical Microbiology 1992; 30: 894–900
  • Niemiec J., Bowman B.H., Young K.K.Y. (1993) Sensitive, specific identification of Pneumocystis carinii by PCR amplification and microwell detection. 93rd General Meeting of the American Society for Microbiologies, Atlanta, GA, May, 16–201993. American Society for Microbiology, Washington, DC, 133–133, Abstract D212
  • Olsson M., Elvin K., Löfdahl S., Linder E. Detection of Pneumocystis carinii DNA in sputum and bronchoalveolar lavage samples by polymerase chain reaction. Journal of Clinical Microbiology 1993; 31: 221–226
  • Persing D.H., Cimino G.D. Amplifiction product inactivation methods. Diagnostic Molecular Microbiology, Principles and Applications, D.H. Persing, T.F. Smith, F.C. Tenover, T.J. White. American Society Microbiology, Washington, DC 1993; 105–121, In
  • Diagnostic Molecular microbiology. Principles and Applications, D.H. Persing, T.F. Smith, F.C. Tenover, T.J. White. American Society for Microbiology, Washington, DC. 1993
  • Peters S.E., Wakefield A.E., Banerji S., Hopkin J.M. Quantification of the detection of Pneuomocystis carinii by DNA amplification. Molecular and Cellular Probes 1992; 6: 115–117
  • Rand K., Houck H. (1992) Development and application of polymerase chain reaction (PCR) for the detection of Candida albicans (CA). Program and Abstracts of the Thirty-Second Interscience Conference on Antimicrobial Agents and Chemotherapy, Anaheim, CA, 1991. American Society for Microbiology, Washington, DC., 382–382, Abstract 1628
  • Reddy L.V., Kumar A., Kurup V.P. Specific amplification of Aspergillus fumigatus DNA by polymerase chain reaction. Molecular and Cellular Probes 1993; 7: 121–126
  • Reiss E., Morrison C.J. Nonculture methods for diagnosis of disseminated candidiasis. Clinical Microbiology Reviews 1993; 6: 311–323
  • Rodriguez E.R., Nasim S., Hsia J., Sandin R.L., Ferreira A., Hilliard B.A., Ross A.M., Garrett C.T. Cardiac myocytes and dendritic cells harbor human immunodeficiency virus in infected patients with and without cardiac dysfunction: detection by multiplex, nested, polymerase chain reaction in individually microdissected cells from right ventricular endomyocardial biopsy tissue. American Journal of Cardiology 1991; 68: 1511–1520
  • Sandin R.L., Fang T.T., Hiemenz J.W., Greene J.N., Card L., Kalik A., Szakacs J.E. Malassezia furfur folliculitis in cancer patients. The need for interaction of microbiologist, surgical pathologist, and clinician in facilitating identification by the clinical microbiology laboratory. Annals of Clinical and Laboratory Science 1993; 23: 377–384
  • Sandin R.L., Hall G.S., Longworth D.L., Washington J.A. Unpredictability of commercially available exoantigen culture confirmation tests in confirming the identity of five Blastomyces dermatitidis isolates. American Journal of Clinical Pathology 1993; 99: 542–545
  • Sandin R.L., Isada C.M., Hall G.S., Tomford J.W., Rutherford I., Rogers A.L., Washington J.A. Aberrant Histoplasma capsulatum. Confirmation of identity by a chemiluminescence labeled DNA probe. Diagnostic Microbiology and Infectious Disease 1993; 17: 235–238
  • Sandin R.L., Rodriguez E.R., Rosenberg E., Porter-Jordan K., Caparas M., Nasim S., Rockis M., Keiser J.F., Garrett C.T. Comparison of sensitivity for human cytomegalovirus of the polymerase chain reaction, traditional tube culture and shell vial assay by sequential dilutions of infected cell lines. Journal of Virological Methods 1991; 32: 181–191
  • Scherer S., Stevens D.A. A Candida albicans dispersed, repeated gene family and its epidemiologic applications. Proceedings of National Academy of Sciences, USA 1988; 85: 1452–1456
  • Schulger N., Godwin T., Sepkowitz K., Armstrong D., Bernard E., Rifkin M., Cerami A., Bucala R. Application of DNA amplification to pneumocystosis: Presence of serum Pneumocystis carinii DNA during human and experimentally induced Pneumocystis carinii pneumonia. Journal of Experimental Medicine 1992; 176: 1327–1333
  • Schönian G., Meusel O., Tietz H.-J., Meyer W., Gräser Y., Tausch I., Presber W., Mitchell T.G. Identification of clinical strains of Candida albicans by DNA fingerprinting with the polymerase chain reaction. Mycoses 1993; 36: 171–179
  • Spreadbury C., Holden D., Aufauvre-Brown A., Bainbridge B., Cohen J. Detection of Aspergillus fumigatus by polymerase chain reaction. Journal of Clinical Microbiology 1993; 31: 615–621
  • Sugita Y., Kanaizuka I., Nakajima H., Ibe M., Yokota S., Matsuyama S. Detection of Candida albicans DNA in cerebrospinal fluid. Journal of Medical and Veterinary Mycology 1993; 31: 353–358
  • Tang C.M., Holden D.W., Aufauvre-Brown A., Cohen J. The detection of Aspergillus spp. by the polymerase chain reaction and its evaluation in bronchoalveolar lavage fluid. American Review of Respiratory Disease 1993; 148: 1313–1317
  • Wakefield A.E., Guiver L., Miller R.F., Hopkin J.M. DNA amplification on induced sputum samples for diagnosis of Pneumocystis carinii pneumonia. Lancet 1991; 337: 1378–1379
  • Wakefield A.E., Pixley F.J., Banerji S., Sinclair K., Miller R.F., Moxon E.R., Hopkin J.M. Detection of Pneumocystis carinii with DNA amplification. Lancet 1990; 336: 451–453
  • Wakefield A.E., Pixley F.J., Banerji S., Sinclair K., Miller R.F., Moxon E.R., Hopkin J.M. Amplification of mitochondrial ribosomal RNA sequences from Pneumocystis carinii DNA of rat and human origin. Molecular and Biochemical Parasitology 1990; 43: 69–76
  • Welsh J., McClelland M. Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Research 1990; 18: 7213–7218
  • White T.J., Bruns T., Lee S., Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols. A Guide to Methods and Applications, M.A. Innis, D.H. Gelfand, J.J. Sninsky, T.J. White. Academic Press, San Diego, CA 1990; 315–322, In
  • Williams J.G.K., Kubelik A.R., Livak K.J., Rafalski J.A., Tingey S.V. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research 1990; 18: 6531–6535
  • Wolcott M.J. Advances in nucleic acid-based detection methods. Clinical Microbiology Reviews 1992; 5: 370–386
  • Zakroff S.G., Kimani G.A., Walter B.L., Lasker B.A., Reiss E., Morrison C.J. (1993) Detection of DNA from Candida albicans (CA) in blood by use of the polymerase chain reaction (PCR). 93rd General Meeting of the American Society for Microbiology. May, 16–201993. American Society for Microbiology, Washington, DC, 538–538, Abstract F-65

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