Estuary-Specific and Adaptive Habitat Suitability Index Model for the Eastern Oyster Crassostrea Virginica in the Pensacola Bay System, Florida, USA

References

• Arnold, W. S., S. D. Meyers, S. P. Geiger, M. E. Luther, D. Narváez, M. E. Frischer, and E. Hofmann. 2017. Applying a coupled biophysical model to predict larval dispersal and source/sink relationships in a depleted metapopulation of the eastern oyster, Crassostrea virginica. Journal of Shellfish Research 36 (1):101–18. doi: 10.2983/036.036.0112.
   Web of Science ®Google Scholar
• Barnes, T. K., A. K. Volety, K. Chartier, F. J. Mazzotti, and L. Pearlstine. 2007. A habitat suitability index model for the eastern oyster Crassostrea virginica, a tool for restoration of the Caloosahatchee Estuary, Florida. Journal of Shellfish Research 26 (4):949–59. doi: 10.2983/0730-8000(2007)26[949:AHSIMF]2.0.CO;2.
   Web of Science ®Google Scholar
• Barnes, T. K., and F. J. Mazzotti. 2005. Using conceptual models to select ecological indicators for monitoring restoration and management of estuarine ecosystems. In Estuarine Indicators, ed. S. A. Bortone, 493–502. Boca Raton, FL/USA: CRC Press.
   Google Scholar
• Beck, M. W., R. D. Brumbaugh, L. Airoldi, A. Carranza, L. Coen, C. Crawford, O. Defeo, G. J. Edgar, B. Hancock, M. C. Kay, et al. 2011. Oyster reefs at risk and recommendations for conservation, restoration and management. BioScience 61 (2):107–16. doi: 10.1525/bio.2011.61.2.5.
   Web of Science ®Google Scholar
• Beseres Pollack, J., A. Cleveland, T. A. Palmer, A. S. Reisinger, and P. A. Montagna. 2012. A restoration suitability index model for the eastern oyster Crassostrea virginica in the Mission-Aransas Estuary, Texas, USA. PloS One 7 (7):e40839. doi: 10.1371/journal.pone.0040839.
   PubMed Web of Science ®Google Scholar
• Beseres Pollack, J., D. Yoskowitz, H.-C. Kim, and P. A. Montagna. 2013. Role and value of nitrogen regulation provided by oysters Crassostrea virginica in the Mission-Aransas Estuary, Texas, USA. PloS One 8 (6):e65314. doi: 10.1371/journal.pone.0065314.
   PubMed Web of Science ®Google Scholar
• Birch, A., R. Brumbaugh, B. DeAngelis, L. Geselbracht, A. Graves, J. Blair, and R. Jones. 2021. Oyster fisheries and habitat management plan for the Pensacola Bay System. Altamonte Springs, FL: The Nature Conservancy.
   Google Scholar
• Cake, C. W.Jr. 1983. Habitat suitability index models: Gulf of Mexico American oyster. Ocean Springs, MS: U.S. Department of the Interior, US Fish and Wildlife Service F\S/0BS-82/l0.57.
   Google Scholar
• Callihan, R., B. Depro, D. Lapidus, T. Sartwell, and C. Viator. 2016. Economic analysis of the costs and benefits of restoration and enhancement of shellfish habitat and oyster propagation in North Carolina. Research Triangle Park, NC: RTI International.
   Google Scholar
• Chowdhury, M. S. N., J. W. M. Wijsman, M. S. Hossain, T. Ysebaert, and A. C. Smaal. 2019. A verified habitat suitability model for the intertidal rock oyster, Saccostrea cucullate. PloS One 14 (6):e0217688. doi: 10.1371/journal.pone.0217688.
   PubMed Web of Science ®Google Scholar
• Coen, L. D., M. W. Luckenbach, and D. L. Breitburg. 1999. The role of oyster reefs as essential fish habitat: A review of current knowledge and some new perspectives. In Fish habitat: Essential fish habitat and rehabilitation , Symposium 22, ed. L. R. Benaka, 438–54. Bethesda, MD: American Fisheries Society.
   Google Scholar
• Coen, L. D., R. D. Brumbaugh, D. Bushek, R. Grizzle, M. W. Luckenbach, M. H. Posey, S. P. Powers, and S. G. Tolley. 2007. Ecosystem services related to oyster restoration. Marine Ecology Progress Series 341:303–7. doi: 10.3354/meps341303.
   Web of Science ®Google Scholar
• Collard, S. B. 1991a. Management options for the Pensacola Bay System: The potential value of seagrass transplanting and oyster bed refurbishment programs. Water Resources Special Report 91-4. Havana, FL: Northwest Florida Water Management District.
   Google Scholar
• Collard, S. B. 1991b. The Pensacola Bay system: Biological trends and current status. Water Resources Special Report 91-3. Havana, FL: Northwest Florida Water Management District.
   Google Scholar
• ESRI (Environmental Systems Research Institute, Inc.). 2023. Jenks Natural Breaks Classification. Site visited on October 27, 2023. https://wiki.gis.com/wiki/index.php/Jenks_Natural_Breaks_Classification
   Google Scholar
• FDACS (Florida Department of Agriculture and Consumer Services). 2020. Aquaculture lease parcel availability maps. Accessed November 22, 2022. https://www.fdacs.gov/Agriculture-Industry/Aquaculture/Aquaculture-Submerged-Land-Leasing/Aquaculture-Lease-Parcel-Availability-Maps
   Google Scholar
• FWC (Florida Fish and Wildlife Conservation Commission). 2019. Oyster habitats of Florida. Accessed July 7, 2022. http://geodata.myfwc.com/datasets/a78160f5acaf4439b49f9fbef4c100ac_5
   Google Scholar
• FWC (Florida Fish and Wildlife Conservation Commission). 2020. Contemporary oyster beds. Accessed November July 7, 2022. https://geodata.myfwc.com/datasets/myfwc::oyster-beds-in-florida/about
   Google Scholar
• FWC (Florida Fish and Wildlife Conservation Commission). 2021. Seagrass habitat in Florida. Accessed July 7, 2022. https://geodata.myfwc.com/datasets/myfwc:seagrass-habitat-in-florida/about
   Google Scholar
• Grabowski, J. H., R. D. Brumbaugh, R. F. Conrad, A. G. Keeler, J. J. Opaluch, C. H. Peterson, M. F. Piehler, S. P. Powers, and A. R. Smyth. 2012. Economic valuation of ecosystem services provided by oyster reefs. BioScience 62 (10):900–9. doi: 10.1525/bio.2012.62.10.10.
   Web of Science ®Google Scholar
• Grizzle, R. E., J. R. Adams, and L. J. Walters. 2002. Historical changes in intertidal oyster Crassostrea virginica in a Florida lagoon potentially related to boating activities. Journal of Shellfish Research 21 (2):749–56.
   Web of Science ®Google Scholar
• Grizzle, R., J. Greene, and L. D. Coen. 2008. Seston removal by natural and constructed intertidal Eastern Oyster Crassostrea virginica Reefs: A comparison with previous laboratory studies, and the value of in situ methods. Estuaries and Coasts 31 (6):1208–20. doi: 10.1007/s12237-008-9098-8.
   Web of Science ®Google Scholar
• Hagy, J. D., and M. C. Murrell. 2007. Susceptibility of a northern Gulf of Mexico estuary to hypoxia: An analysis using box models. Estuarine, Coastal and Shelf Science 74 (1-2):239–53. doi: 10.1016/j.ecss.2007.04.013.
   Web of Science ®Google Scholar
• Humphries, A. T., S. G. Ayvazian, J. C. Carey, B. T. Hancock, S. Grabbert, D. Cobb, C. J. Strobel, and R. W. Fulweiler. 2016. Directly measured denitrification reveals oyster aquaculture and restored oyster reefs remove nitrogen at comparable high rates. Frontiers in Marine Science 3:74. doi: 10.3389/fmars.2016.00074.
   Web of Science ®Google Scholar
• Interagency Sea Level Rise Scenario Tool, Escambia County, Florida. 2023. Accessed November 4, https://sealevel.nasa.gov/task-force-scenario-tool
   Google Scholar
• Johnson, G. 2021a. Escambia and Pensacola bays subtidal oyster reef mapping and assessment. Marrero, LA: MREC Environmental.
   Google Scholar
• Johnson, G. 2021b. Pensacola East and Blackwater bays subtidal and intertidal oyster reef mapping and assessment. Marrero, LA: MREC Environmental.
   Google Scholar
• Jones, W. K., J. H. Cason, and R. Bjorklund. 1992. A literature-based review of the physical, sedimentary, and water quality aspects of the Pensacola Bay system. Water Resources Special Report 90-3. Havana, FL: Northwest Florida Water Management District.
   Google Scholar
• Kroeger, T. 2012. Dollars and sense: Economic benefits and impacts from two oyster reef restoration projects in the northern Gulf of Mexico. Arlington, VA: The Nature Conservancy.
   Google Scholar
• Kroeger, T., and G. Guannel. 2014. Fishery enhancement and coastal protection services provided by two restored Gulf of Mexico oyster reefs. In Valuing ecosystem services-methodological issues and case studies, ed. K. Ninan, 334–58. Cheltenham, England: Edward Elgar.
   Google Scholar
• La Peyre, M. K., A. T. Humphries, S. M. Casas, and J. F. La Peyre. 2014. Temporal variation in development of ecosystem services from oyster reef restoration. Ecological Engineering 63:34–44. doi: 10.1016/j.ecoleng.2013.12.001.
   Web of Science ®Google Scholar
• La Peyre, M. K., D. A. Marshall, and S. E. Sable. 2021. Oyster model inventory: Identifying critical data and modeling approaches to support restoration of oyster reefs in coastal U.S. Gulf of Mexico waters: U.S. Geological Survey, Open-File Report 2021–1063, Reston, VA.
   Google Scholar
• Lai, Q. T., E. R. Irwin, and Y. Zhang. 2020a. Estimating nitrogen removal services of eastern oyster Crassostrea virginica in Mobile Bay, Alabama. Ecological Indicators 117:106541. doi: 10.1016/j.ecolind.2020.106541.
   Web of Science ®Google Scholar
• Lai, Q. T., E. R. Irwin, and Y. Zhang. 2020b. Quantifying harvestable fish and crustacean production and associated economic values provided by oyster reefs. Ocean & Coastal Management 187:105104. doi: 10.1016/j.ocecoaman.2020.105104.
   Web of Science ®Google Scholar
• Lewis, F. G. 2010. East Bay/Blackwater Bay/Lower Yellow River preliminary baseline resource characterization with a discussion of flow-dependent habitats and species. Water Resources Special Report 2010-2. Havana, FL: Northwest Florida Water Management District.
   Google Scholar
• Lewis, M., J. T. Kirschenfeld, and T. Goodheart. 2016. Environmental quality of the Pensacola Bay System: Retrospective review for future resource management and rehabilitation. EPA/600/R-16/169. Gulf Breeze, FL: US Environmental Protection Agency.
   Google Scholar
• Lipcius, R. N., R. P. Burke, D. N. McCulloch, S. J. Schreiber, D. M. Schulte, R. D. Seitz, and J. Shen. 2015. Overcoming restoration paradigms: Value of the historical record and metapopulation dynamics in native oyster restoration. Frontiers in Marine Science 2:65. doi: 10.3389/fmars.2015.00065.
   Web of Science ®Google Scholar
• Livingston, R. J. 2015. Climate change and coastal ecosystems: Long-term effects of climate and nutrient loading on trophic organization. Boca Raton, FL: CRC Press.
   Google Scholar
• Millennium Ecosystem Assessment. 2005. Ecosystems and human well-being: Synthesis. Washington, DC: Island Press.
   Google Scholar
• NHD (National Hydrography Dataset). 2022. Accessed September 22, 2022. https://www.usgs.gov/national-hydrography/national-hydrography-dataset
   Google Scholar
• OCS (Office of Coast Survey, National Marine Fisheries Service). 2015. Coastal maintained channels in US waters. Accessed July 7, 2022. https://www.fisheries.noaa.gov/inport/item/39972.
   Google Scholar
• Olinger, L. W., R. G. Rogers, P. L. Fore, R. L. Todd, B. L. Mullins, F. T. Bisterfeld, and L. A. Wise. 1975. Environmental and recovery studies of Escambia Bay and the Pensacola Bay System, Florida. EPA 904/9-76-016. Atlanta, GA: US Environmental Protection Agency.
   Google Scholar
• Orlando, S. P., Jr., L. P. Roaza, G. H. Ward, and C. J. Klein. 1993. Salinity characteristics of Gulf of Mexico estuaries. Silver Springs, MD: National Oceanic and Atmospheric Administration, Office of Ocean Resources Conservation and Assessment.
   Google Scholar
• Paraso, M. C., S. E. Ford, E. N. Powell, E. E. Hofmann, and J. M. Klinck. 1999. Modeling the MSX Parasite in eastern oyster, Crassostrea virginica, populations. II. Salinity effects. Norfolk, VA: CCPO Publications.
   Google Scholar
• Piehler, M. F., and A. R. Smyth. 2011. Habitat-specific distinctions in estuarine denitrification affect both ecosystem function and services. Ecosphere 2 (1):art12. doi: 10.1890/ES10-00082.1.
   Web of Science ®Google Scholar
• Powers, S. P., H. Roman, J. Meixner, D. Wirasaet, S. Brus, G. Fricano, and J. Westerink. 2023. Establishing connectivity patters of eastern oysters, Crassostrea virginica, on regional oceanographic scales. Ecosphere 14 (1):e4337. doi: 10.1002/ecs2.4337.
   Web of Science ®Google Scholar
• PPBEP (Pensacola & Perdido Bays Estuary Program). 2022. Comprehensive conservation and management plan: A prescription for healthy bays. Pensacola, FL: Pensacola & Perdido Bays Estuary Program.
   Google Scholar
• Puckett, B. J., S. J. Theuerkauf, D. B. Eggleston, R. Guajardo, C. Hardy, J. Gao, and R. A. Luettich. 2018. Integrating larval dispersal, permitting, and logistical factors within a validated habitat suitability index for oyster restoration. Frontiers in Marine Science 5:76. doi: 10.3389/fmars.2018.00076.
   Web of Science ®Google Scholar
• Radabaugh, K. R., L. D. Coen, S. P. Geiger, and R. P. Moyer. 2019. Introduction. In Oyster integrated mapping and monitoring program report for the State of Florida, eds. K. R. Radabaugh, S. P. Geiger, and R. P. Moyer, 1–23. St. Petersburg, FL: Fish and Wildlife Research Institute, Florida Fish and Wildlife Conservation Commission.
   Google Scholar
• Roloff, G. J., and B. J. Kernohan. 1999. Evaluating the reliability of habitat suitability index models. Wildlife Society Bulletin 27:973–85.
   Web of Science ®Google Scholar
• Schamberger, M., and A. H. Farmer. 1978. The habitat evaluation procedures: Their application in project planning and impact evaluation. In Transactions of the forty-third North American Wildlife and Natural Resources Conference. Washington, DC. Wildlife Management Institute.
   Google Scholar
• Seavey, J. R., W. E. Pine, III, P. Frederick, L. Sturmer, and M. Berrigan. 2011. Decadal changes in oyster reefs in the Big Bend of Florida’s Gulf Coast. Ecosphere 2 (10):art114. doi: 10.1890/ES11-00205.1.
   Web of Science ®Google Scholar
• Smeltz, H. A. 1898. The oyster-bars of the west coast of Florida: Their depletion and restoration. Bulletin of the US Fish Commission 17:305–8.
   Google Scholar
• Smith, R. S., S. Hogan, K. N. Tedford, B. Lusk, M. A. Reidenbach, and M. C. N. Castorani. 2022. Long-term data reveal greater intertidal oyster biomass in predicted suitable habitat. Marine Ecology Progress Series 683:221–6. doi: 10.3354/meps13949.
   Web of Science ®Google Scholar
• Soniat, T. M., and M. S. Brody. 1988. Field verification of a habitat suitability model for the American oyster. Estuaries 11 (2):87–95. doi: 10.2307/1351995.
   Google Scholar
• Theuerkauf, S. J., and R. N. Lipcius. 2016. Quantitative validation of a habitat suitability index for oyster restoration. Frontiers in Marine Science 3:64. doi: 10.3389/fmars.2016.00064.
   Web of Science ®Google Scholar
• Theuerkauf, S. J., D. B. Eggleston, and B. J. Puckett. 2019. Integrating ecosystem services considerations within a GIS-based habitat suitability index for oyster restoration. PloS One 14 (1):e0210936. doi: 10.1371/journal.pone.0210936.
   PubMed Web of Science ®Google Scholar
• USEPA (US Environmental Protection Agency). 2004. The ecological condition of the Pensacola Bay System, northwest Florida (1994 - 2001). Report 620-R-05-002. Gulf Breeze, FL: USEPA.
   Google Scholar
• USFC (US Fish Commission). 1883. General chart of the coast, No. XIII, Gulf Coast from Cape San Blas to Mississippi Passes. Compiled by Lt. Francis Winslow. Washington, DC: US Navy.
   Google Scholar
• USFWS (US Fish and Wildlife Service). 1981. Standards for the development of habitat suitability index models. Washington, DC: USFWS.
   Google Scholar
• VanderKooy S, editor. 2012. The oyster fishery of the Gulf of Mexico, United States: A regional management plan–2012 revision. Publication No. 202. Ocean Springs, MS: Gulf States Marine Fisheries Commission. Available from http://www.gsmfc.org/publications/GSMFC%20Number%20202.pdf.
   Google Scholar
• Vinagre, C., V. Fonseca, H. Cabral, and M. J. Costa. 2006. Habitat suitability index models for the juvenile soles, Solea solea and Solea senegalensis, in the Tagus estuary: Defining variables for species management. Fisheries Research 82 (1-3):140–9. doi: 10.1016/j.fishres.2006.07.011.
   Web of Science ®Google Scholar
• WFRPC (West Florida Regional Planning Council), Bay Area Research Council, National Oceanic and Atmospheric Administration, U.S. Environmental Protection Agency. 2005. The Pensacola Bay watershed management plan, an integrated action plan. Pensacola, FL: Cooperative publication of U.S. Environmental Protection Agency, Bay Area Research Council, National Oceanic and Atmospheric Administration, the West Florida Regional Planning Council.
   Google Scholar
• Zu Ermgassen, P. S. E., M. D. Spalding, B. Blake, L. D. Coen, B. Dumbauld, S. Geiger, J. H. Grabowski, R. Grizzle, M. Luckenbach, K. McGraw, et al. 2012. Historical ecology with real numbers: Past and present extent and biomass of an imperiled estuarine habitat. Proceedings of the Royal Society B: Biological Sciences 279 (1742):3393–400. doi: 10.1098/rspb.2012.0313.
   PubMed Web of Science ®Google Scholar