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Inhalation Toxicology
International Forum for Respiratory Research
Volume 18, 2006 - Issue 10
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Research Article

Application of Magnetic Resonance (MR) Imaging for the Development and Validation of Computational Fluid Dynamic (CFD) Models of the Rat Respiratory System

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Pages 787-794 | Received 08 Dec 2005, Accepted 06 Mar 2006, Published online: 06 Oct 2008

REFERENCES

  • ADAPCO. Star-CD methodology. 2004, V3.24. CD adapco Group. Available at http://www.cd-adapco.com
  • Andersen M. E. Toxicokinetic modeling and its application in chemical risk assessment. Toxicol. Lett. 2003; 138: 9–27, [INFOTRIEVE], [CSA]
  • Babcock E., Nelson I., Kadlecek S., Driehuys B., Anderson L. W., Hersman F. W., Walker T. G. Hybrid spin-exchange optical pumping of He-3. Phys. Rev. Lett. 2003; 91: 123003, [INFOTRIEVE], [CSA]
  • Balashazy I. Simulation of particle trajectories in bifurcating tubes. J. Comput. Phys. 1994; 110: 11–22, [CSA]
  • Balashazy I., Hofmann W. Particle deposition in airway bifurcations—Inspiratory flow. J. Aerosol Sci. 1993; 24: 745–772, [CSA]
  • Balashazy I., Hofmann W. Deposition of aerosols in asymmetric airway bifurcations. J. Aerosol Sci. 1995; 26: 273–292, [CSA]
  • Callaghan P. T. Pulsed-gradient spin-echo NMR for planar, cylindrical, and spherical pores under conditions of wall relaxation. J. Magn. Resonance A 1995; 113: 53–59, [CSA]
  • Caprihan A., Fukushima E. Flow measurements by NMR. Phys. Rep. 1990; 198(4)195–235, [CSA]
  • Chan B., Babcock E., Anderson L. W., Walker T. G., Chen W. C., Smith T. B., Thompson A. K., Gentile T. R. Production of highly polarized He-3 using spectrally narrowed diode laser array bars. J. Appl. Phys. 2003; 94: 6908–6914, [CSA]
  • Chaturvedi A., Lee Z. Three-dimensional segmentation and skeletonization to build an airway tree data structure for small animals. Phys. Med. Biol. 2005; 50: 1405–1419, [INFOTRIEVE], [CSA]
  • Chen X. J., Chawla M. S., Hedlund L. W., Moller H. E., MacFall J. R., Johnson G. A. MR microscopy of lung airways with hyperpolarized 3He. Magn. Resonance Med. 1998; 39(1)79–84, [CSA]
  • Chen X. J., Hedlund L. W., Möller H. E., Chawla M. S., Maronpot R. R., Johnson G. A. Detection of emphysema in rat lungs by using magnetic resonance measurements of 3He diffusion. Proc. Natl. Acad. Sci. USA 2000; 97(21)11478–11481, [INFOTRIEVE], [CSA]
  • Choi S., Tang X. -W., Cory D. G. Constant time imaging approaches to NMR microscopy. Int. J. Imaging Systems Technolo. 1997; 8: 263–276, [CSA]
  • Conolly R. B., Kimbell J. S., Janszen D., Schlosser P. M., Kalisak D., Preston J., Miller F. J. Human respiratory tract cancer risks of inhaled formaldehyde: Dose-response predictions derived from biologically-motivated computational modeling of a combined rodent and human dataset. Toxicol. Sci. 2004; 82(1)279–296, [PUBMED], [INFOTRIEVE], [CSA]
  • Frederick C. B., Lomax L. G., Black K. A., Finch L., Scribner H. E., Kimbell J. S., Morgan K. T., Subramaniam R. P., Morris J. B. Use of a hybrid computational fluid dynamics and physiologically based inhalation model for interspecies dosimetry comparisons of ester vapors. Toxicol. Appl. Pharmacol. 2002; 183(1)23–40, [INFOTRIEVE], [CSA]
  • Gravina S., Cory D. G. Sensitivity and resolution of constant-time imaging. J. Magn. Resonance 1994; 104(ser. B)53–61, [CSA]
  • Horsfield K., Cummings G. Angles of branching and diameters of branches in the human bronchial tree. Bull. Math. Biophys. 1967; 29: 245–259, [INFOTRIEVE], [CSA]
  • Jacob R. E., Morgan S. W., Saam B. He-3 spin exchange cells for magnetic resonance imaging. J. Appl. Phys. 2002; 92: 1588–1597, [CSA]
  • Johnson G. A., Cofer G. P., Hedlund L. W., Maronpot R. R., Suddarth S. A. Registered 1H and 3He magnetic resonance microscopy of the lung. Magn. Resonance Med. 2001; 45: 365–370, [CSA]
  • Kaiser L. G., Logan J. W., Meersmann T., Pines A. Dynamic NMR microscopy of gas phase poiseuille flow. J. Magn. Resonance 2001; 149: 144–148, [CSA]
  • Kepler G. M., Joyner D. R., Fleishman A., Godo M. N., Richardson R. B., Gross E. A., Morgan K. T., Kimbell J. S. Method for obtaining accurate geometrical coordinates of nasal airways for computer dosimetry modeling and lesion mapping. Inhal. Toxicol. 1995; 7: 1207–1224, [CSA]
  • Kimbell J. S., Subramaniam R. P. Use of computational fluid dynamics models for dosimetry of inhaled gases in the nasal passages. Inhal. Toxicol. 2001; 13: 325–334, [INFOTRIEVE], [CSA]
  • Kimbell J. S., Gross E. A., Joyner D. R., Godo M. N., Morgan K. T. Application of computational fluid dynamics to regional dosimetry of inhaled chemicals in the upper respiratory tract of the rat. Toxicol. Appl. Pharmacol. 1993; 121: 253–263, [INFOTRIEVE], [CSA]
  • Kimbell J. S., Godo M. N., Gross E. A., Joyner D. R., Richardson R. B., Morgan K. T. Computer simulation of inspiratory airflow in all regions of the F344 rat nasal passages. Toxicol. Appl. Pharmacol. 1997; 145: 388–398, [INFOTRIEVE], [CSA]
  • Kleinstreuer C., Zhang Z. Targeted drug aerosol deposition analysis for a four-generation lung airway model with hemispherical tumors. J Biomech. Eng. 2003; 125(2)197–206, [INFOTRIEVE], [CSA]
  • Kuprat A. Adaptive smoothing techniques for 3-D unstructured meshes. Los Alamos National Laboratory Report LA-UR-96-1116, 1996, Available at http://lagrit.lanl.gov/pdfs/MSU96.pdf
  • Kuprat A., Khamayseh A., George D., Larkey L. Volume conserving smoothing for piecewise linear curves, surfaces, and triple lines. J. Comp. Phys. 2001; 172: 99–118, [CSA]
  • Martonen T. B., Katz I. M. Deposition patterns of polydisperse aerosols within human lungs. J. Aerosol Med. 1993; 6: 251–274, [CSA]
  • Martonen T. B., Schroeter J. D. Risk assessment dosimetry model for inhaled particulate matter: II. Laboratory surrogates (rat). Toxicol. Lett. 2003; 138: 133–142, [INFOTRIEVE], [CSA]
  • Martonen T., Fleming J., Schroeter J., Conway J., Hwang D. In silico modeling of asthma. Adv. Drug Deliv. Rev. 2003; 55: 829–849, [INFOTRIEVE], [CSA]
  • Martonen T. B., Smyth H. D., Issacs K. K., Burton R. T. Issues in drug delivery: Concepts and practice. Respir. Care 2005; 50(9)1228–1252, [INFOTRIEVE], [CSA]
  • McRobbie D. W., Pritchard S., Quest R. A. Studies of the human oropharyngeal airspaces using magnetic resonance imaging. I. Validation of a three-dimensional MRI method for producing ex vivo virtual and physical casts of the oropharyngeal airways during inspiration. J. Aerosol Med. 2003; 16(4)401–415, [INFOTRIEVE], [CSA]
  • Minard K. R., Timchalk C., Corley R. A. T2-shortening of 3He gas by magnetic microspheres. J. Magn. Resonance 2005; 173: 90–96, [CSA]
  • Mitchell S. A., Vavasis S. A. Quality mesh generation in higher dimensions. SIAM J. Comput. 2000; 12: 186–210, [CSA]
  • Möller H. E., Chen X. J., Chawla M. S., Cofer G. P., Driehys B., Hedlund L. W., Suddarth S. A., Johnson G. A. Sensitivity and resolution in 3D NMR microscopy of the lung with hyperpolarized noble gases. Magn. Resonance Med. 1999; 41(4)800–808, [CSA]
  • Newling B., Poirier C. C., Zhi Y., Rioux J. A., Coristine A. J., Roach D., Balcom B. J. Velocity imaging of highly turbulant gas flow. Phys. Rev. Lett. 2004; 93(15)154503, [INFOTRIEVE], [CSA]
  • Nowak N., Kakade P. P., Annapragada A. V. Computational fluid dynamics simulation of airflow and aerosol deposition in human lungs. Ann. Biomed. Eng. 2003; 31: 374–390, [INFOTRIEVE], [CSA]
  • Paulus M. J., Gleason S. S., Easterly M. E., Foltz C. J. A review of high-resolution X-ray computed tomography and other imaging modalities for small animal research. Lab. Anim. 2001; 30(3)36–45, [CSA]
  • Pecas-Barba G., Ruiz-Cabello J., Cremillieux Y., Rodriquez I., Dupuich D., Callot V., Ortega M., Robio Arbo M. L., Cortijo M., Gonzalez-Mangado N. Helium-3 MRI diffusion coefficient: Correlation to morphometry in a model of mild emphysema. Eur. Respir. J. 2003; 22: 14–19, [CSA]
  • Perry S. F., Purohit A. M., Boser S., Mitchell I., Green F. H. Bronchial casts of human lungs using negative pressure injection. Exp. Lung Res. 2000; 26(1)27–39, [INFOTRIEVE], [CSA]
  • Perzl M. A., Schulz H., Paretzke H. G., Englmeier K. H., Heyder J. Reconstruction of the lung geometry for the simulation of aerosol transport. J. Aerosol Med. 1996; 9(3)409–418, [CSA]
  • Pope J. M., Yao S. Quantitative NMR imaging of flow. Concepts Magn. Resonance 1993; 5: 281–302, [CSA]
  • Prado P. J., Balcom B. J., Mastikhin I. V., Cross A. R., Armstrong R. L., Logan A. Magnetic resonance imaging of gases: A single-point ramped imaging with T1 enhancement (SPRITE) study. J. Magn. Resonance 1999; 137: 324–332, [CSA]
  • Raabe O. G., Yeh H. C., Schum G. M., Phalen R. F. Tracheobronchial geometry—Human, dog, rat, hamster. Lovelace Respiratory Research Institute, Albuquerque, NM 1976; 87115, Report LF-53
  • Sbirlea-Apiou G., Lemaire M., Katz I., Conway J., Fleming J., Martonen T. Simulation of the regional manifestation of asthma. J. Pharm. Sci. 2004; 93: 1205–1216, [INFOTRIEVE], [CSA]
  • Sethian J. A. Level set methods and fast marching methods. Cambridge University Press, Cambridge 1996
  • Stepisnik J. Measuring and imaging of flow by NMR. Prog. NMR Spectrosc. 1985; 17: 187–209, [CSA]
  • Stepisnik J. Validity limits of Gaussian approximation in cumulant expansion for diffusion attenuation of spin echo. Physica B 1999; 270: 110–117, [CSA]
  • Subramaniam R. P., Richardson R. B., Morgan K. T., Kimbell J. S. Computational fluid dynamics simulations of inspiratory airflow in the human nose and nasopharynx. Inhal. Toxicol. 1998; 10: 91–120, [CSA]
  • Tawhai M., Pullan A. A., Hunter P. J. Generation of an anatomically based three-dimensional model of the conductin airways. Ann. Biomed. Eng. 2000; 28: 793–802, [CSA]
  • Tawhai M. H., Hunter P., Tschirren J., Reinhardt J., McLennan G., Hoffman E. A. CT-based geometry analysis and finite element models of the human and ovine bronchial tree. J. Appl. Physiol. 2004; 97(6)2310–2321, [INFOTRIEVE], [CSA]
  • Timchalk C., Trease H. E., Trease L. L., Minard K. R., Corley R. A. Potential technology for studying dosimetry and response to airborne chemical and biological pollutants. Toxicol. Ind. Health 2001; 17: 270–276, [INFOTRIEVE], [CSA]
  • Walker T. G., Happer W. Spin-exchange optical pumping of noble-gas nuclei. Rev. Mod. Phys. 1997; 69: 629–642, [CSA]
  • Weibel E. R. Morphometry of the human lung. Springer-Verlag, Berlin 1963
  • Yoo T. S. Segmentation basics. Insight into images: Principles and practices for segmentation, registration, and image analysis, T. Yoo. A. K. Peters Publishing, Wellesey, MA 2004; 121–129
  • Zhang Z., Kleinstreuer C., Kim C. S. Effects of curved inlet tubes on air flow and particle deposition in bifurcating lung models. J. Biomech. 2001; 34: 659–669, [INFOTRIEVE], [CSA]

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