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Original Articles

Zinc uptake in the Basidiomycota: Characterization of zinc transporters in Ustilago maydis

ORCID Icon, ORCID Icon, ORCID Icon, ORCID Icon & ORCID Icon
Pages 39-50 | Received 28 Jun 2019, Accepted 03 Sep 2019, Published online: 16 Oct 2019

References

  • Adiloglu A, Adiloglu S. 2006. The effect of boron (B) application on the growth and nutrient contents of maize in zinc (Zn) deficient soils. Res J Agric Bio Sci 2:1–4.
  • Alloway BJ. 2004. Zinc in Soils and Crop Nutrition. International Zinc Association Communications. Brussels, Belgium: IZA publications.
  • Alloway BJ. 2008. Zinc in Soils and Crop Nutrition. 2nd ed. Brussels, Belgium and Paris, France: International Zinc Association (IZA) and International Fertilizer Association (IFA), 139.
  • Alloway BJ. 2009. Soil factors associated with zinc deficiency in crops and humans. Environ Geochem Health 31:537–548.
  • Almagro Armenteros JJ, Sønderby CK, Sønderby SK, Nielsen H, Winther O. 2017. DeepLoc: prediction of protein subcellular localization using deep learning. Bioinformatics 33:3387–3395.
  • Amberg DC, Burke D, Strathern JN. 2005. Methods in Yeast Genetics: A Cold Spring Harbor Laboratory Course Manual. Cold Spring Harbor, New York, NY: Cold Spring Harbor Laboratory Press, 11–17.
  • Amich J. 2010. Homeostasis del zinc a pH alcalino y su relevancia en la virulencia de Aspergillus fumigatus. [Zinc homeostasis at alkaline pH and its relevance in Aspergillus fumigatus virulence], [dissertation]. España: Universidad de Salamanca.
  • Amich J, Leal F, Calera JA. 2009. Repression of the acid ZrfA/ZrfB zinc-uptake system of Aspergillus fumigatus mediated by PacC under neutral, zinc-limiting conditions. Int Microbiol 12:39–47.
  • Amich J, Vicente-franqueira R, Mellado E, Ruiz-Carmuega A, Leal F, Calera J. 2014. The ZrfC alkaline zinc transporter is required for Aspergillus fumigatus virulence and its growth in the presence of the Zn/Mn-chelating protein calprotectin. Cell Microbiol 16:548–564.
  • Aréchiga ET, Ruiz-Herrera J. 2005. The RIM101/PacC homologue from the Basidiomycete Ustilago maydis is functional in multiple pH-sensitive phenomena. Eukaryot Cell 4:999–1008.
  • Balaji RV, Colvin RA. 2005. A proton-dependent zinc uptake in PC12 cells. Neurochem Res 30:171–176.
  • Banuett F, Herskowitz I. 1989. Different a alleles of Ustilago maydis are necessary for maintenance of filamentous growth but not for meiosis. Proc Natl Acad Sci USA 86:5878–5882.
  • Baslam M, Qaddoury A, Goicoechea N. 2014. Role of native and exotic mycorrhizal symbiosis to develop morphological, physiological and biochemical responses coping with water drought of date palm, Phoenix dactylifera. Trees 28:161–172.
  • Bers DM, Patton CW, Nuccitelli R. 2010. A practical guide to the preparation of Ca2+ buffers. Methods in cell biology. Vol. 99. Cambridge, MA: Academic Press; 1–26.
  • Biesalski HK. 2013. Hidden Hunger. Berlin, Heidelberg: Springer, 25–50.
  • Bird A, Blankman E, Stillman D, Eide D, Winge R. 2004. The Zap1 transcriptional activator also acts as a repressor by binding downstream of the TATA box in ZRT2. Embo J 23:1123–1132.
  • Brachmann CB, Davies A, Cost GJ, Caputo E, Li J, Hieter P, Boeke JD. 1998. Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications. Yeast 14:115–132.
  • Buchan DW, Minneci F, Nugent TC, Bryson K, Jones DT. 2013. Scalable web services for the PSIPRED protein analysis workbench. Nucleic Acids Res 41:W349–W357.
  • Cakmak I, Pfeiffer W, Mcclafferty B. 2010. Biofortification of durum wheat with zinc and iron. Cereal Chem 87:10–20.
  • Catlett NL, Lee BN, Yoder OC, Turgeon BG. 2003. Split-marker recombination for efficient targeted deletion of fungal genes. Fungal Genet Rep 50:9–11.
  • Cavagnaro TR. 2008. The role of arbuscular mycorrhizas in improving plant zinc nutrition under low soil zinc concentrations: a review. Plant Soil 304:315–325.
  • de Mattos-Shipley KM, Ford KL, Alberti F, Banks AM, Bailey AM, Foster GD. 2016. The good, the bad and the tasty: The many roles of mushrooms. Stud Mycol 85:125–157.
  • Eide D. 2005. The Zip family of zinc transporters. Zinc Finger Proteins. Boston, MA: Springer, 261–264.
  • Eide D. 2006. Zinc transporters and the cellular trafficking of zinc. Biochim Biophys Acta 1763:711–722.
  • Eide D, Guarente L. 1992. Increased dosage of a transcriptional activator gene enhances iron-limited growth of Saccharomyces cerevisiae. J Gen Microbiol 138:347–354.
  • Fairhead C, Llorente B, Denis F, Soler M, Dujon B. 1996. New vectors for combinatorial deletions in yeast chromosomes and for gap-repair cloning using 'split-marker' recombination. Yeast 12:1439–1457.
  • Fairhead C, Thierry A, Denis F, Eck M, Dujon B. 1998. 'Mass-murder' of ORFs from three regions of chromosome XI from Saccharomyces cerevisiae. Gene 223:33–46.
  • Figueiredo DD, Barros PM, Cordeiro AM, Serra TS, Lourenço T, Chander S, et al. 2012. Seven zinc-finger transcription factors are novel regulators of the stress responsive gene OsDREB1B. J Exp Bot 63:3643–3656.
  • Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, Eddy SR, et al. 2014. Pfam: the protein families database. Nucleic Acids Res 42:D222–D230.
  • Gaither L, Eide D. 2001. Eukaryotic zinc transporters and their regulation. BioMetals 14:251–270.
  • Green MR, Sambrook J. 2012. Molecular Cloning: A Laboratory Manual, 4th edition. Cold Spring Harbor, New York, NY: Cold Spring Harbor Laboratory Press; 11–26, 362–372.
  • Guerinot ML. 2000. The ZIP family of metal transporters. Biochim Biophys Acta 1465:190–198.
  • Hamid A, Ahmad N. 2001. Paper at regional workshop on integrated plant nutrition system. (IPNS): development and rural poverty alleviation, 18–21 Sept, Bangkok.
  • Hofmann K, Stoffel W. 1993. TMbase-A database of membrane spanning proteins segments. Biol Chem Hoppe-Seyler 374:166.
  • Holliday R. 1961. Induced mitotic crossing-over in Ustilago maydis. Genet Res 2:231–248.
  • Hotz C, Brown KH. 2004. Assessment of the risk of zinc deficiency in populations and options for its control. Food Nutr Bull 25:94–204.
  • Jin W, Peng L, Zhang X, Sun H, Yuan Z. 2019. Effects of endophytic and ectomycorrhizal basidiomycetes on Quercus virginiana seedling growth and nutrient absorption. J Sustain Forest 38:1–14.
  • Kabala C, Singh BR. 2001. Fractionation and mobility of copper, lead, and zinc in soil profiles in the vicinity of a copper smelter. J Environ Qual 30:485–492.
  • Kämper J, Kahmann R, Bölker M, Ma L, Brefort T, Saville BJ, et al. 2006. Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. Nature 44:97–101.
  • Kramer U, Clemens S. 2005. Function and homeostasis of zinc, copper, and nickel in plants. Topics Curr Genet 14:215–271.
  • Lamb TM, Xu W, Diamond A, Mitchell AP. 2001. Alkaline response genes of Saccharomyces cerevisiae and their relationship to the RIM101 pathway. J Biol Chem 276:1850–1856.
  • Lamb T, Mitchell AP. 2003. The transcription factor Rim101p governs ion tolerance and cell differentiation by direct repression of the regulatory genes NRG1 and SMP1 in Saccharomyces cerevisiae. Mol Cell Biol 23:677–686.
  • Livak KJ, Schmittgen TD. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25:402–408.
  • MacDiarmid C, Gaither L, Eide D. 2000. Zinc transporters that regulate vacuolar zinc storage in Saccharomyces cerevisiae. Embo J 19:2845–2855.
  • Mendoza-Cózatl DG, Xie Q, Akmakjian GZ, Jobe TO, Patel A, Stacey MG, et al. 2014. OPT3 is a component of the iron-signaling network between leaves and roots and misregulation of OPT3 leads to an over-accumulation of cadmium in seeds. Mol Plant 7:1455–1469.
  • Mewes HW, Amid C, Arnold R, Frishman D, Güldener U, Mannhaupt G, et al. 2004. MIPS: analysis and annotation of proteins from whole genomes. Nucleic Acids Res 32:41D–44.
  • NCBI Resource Coordinators. 2016. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 44: (Database issue): D7–D19.
  • Nishida S, Mizuno T, Obata H. 2008. Involvement of histidine-rich domain of ZIP family transporter TjZNT1 in metal ion specificity. Plant Physiol Biochem 46:601–606.
  • Omasits U, Ahrens CH, Müller S, Wollscheid B. 2014. Protter: interactive protein feature visualization and integration with experimental proteomic data. Bioinformatics 30:884–886.
  • Raklami A, Bechtaoui N, Tahiri AI, Anli M, Meddich A, Oufdou K. 2019. Use of Rhizobacteria and Mycorrhizae Consortium in the open field as a strategy for improving crop nutrition, productivity and soil fertility. Front Microbiol 10:1106.
  • Rentsch D, Laloi M, Rouhara I, Schmelzer E, Delrot S, Frommer WB. 1995. NTR1 encodes a high affinity oligopeptide transporter in Arabidopsis. FEBS Lett 370:264–268.
  • Ruiz-Herrera J. 2008. Ustilago maydis: ascenso de un hongo mexicano de la gastronomía local al mundo científico [Ustilago maydis: rise of a Mexican fungus from local gastronomy to the scientific world]. Nova Scientia 1:118–135.
  • Serrano R, Ruiz A, Bernal D, Chambers JR, Arino J. 2002. The transcriptional response to alkaline pH in Saccharomyces cerevisiae: evidence for calcium-mediated signalling. Mol Microbiol 46:1319–1333.
  • Sezonov G, Joseleau-Petit D, D'Ari R. 2007. Escherichia coli physiology in Luria-Bertani broth. J Bacteriol 189:8746–8749.
  • SPSS Inc. 2008. SPSS Statistics for Windows, Version 17.0. Chicago: SPSS Inc.
  • Stein AJ, Nestel P, Meenakshi JV, Qaim M, Sachdev HP, Bhutta ZA. 2007. Plant breeding to control zinc deficiency in India: how cost-effective is biofortification? Public Health Nutr 10:492–501.
  • Tapiero H, Tew KD. 2003. Trace elements in human physiology and pathology: zinc and metallothioneins. Biomed Pharmacother 57:399–411.
  • Teixeira MC, Monteiro PT, Palma M, Costa C, Godinho CP, País P, et al. 2018. YEASTRACT: an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae. Nucleic Acids Res 46:D348–D353.
  • The UniProt Consortium. 2018. UniProt: the universal protein knowledgebase. Nucleic Acids Res 46:2699
  • Trushina N, Levin M, Mukherjee K, Horwitz B. 2013. PacC and pH–dependent transcriptome of the mycotrophic fungus Trichoderma virens. BMC Genomics 14:138.
  • Tusnády GE, Simon I. 2001. The HMMTOP transmembrane topology prediction server. Bioinformatics 17:849–850.
  • Vyas VK, Berkey CD, Miyao T, Carlson M. 2005. Repressors Nrg1 and Nrg2 regulate a set of stress-responsive genes in Saccharomyces cerevisiae. Eukaryot Cell 4:1882–1891.
  • Velu G, Singh RP, Huerta-Espino J, Peña-Bautista RJ, Ortiz-Monasterio I. 2011. Breeding for enhanced zinc and iron concentration in CIMMYT spring wheat germplasm. Czech J Genet Plant Breed 47:(Special Issue): S174–S177.
  • Welch R, Graham R. 2004. Breeding for micronutrients in staple food crops from a human nutrition perspective. J Exp Bot 55:353–364.
  • Wilson D, Citiulo F, Hube B. 2012. Zinc exploitation by pathogenic fungi. PLoS Pathog 8:e1003034
  • Yu JH, Hamari Z, Han KH, Seo JA, Reyes-Domínguez Y, Scazzocchio C. 2004. Double-joint PCR: a PCR-based molecular tool for gene manipulations in filamentous fungi. Fungal Genet Biol 41:973–981.
  • Zhao H, Butler E, Rodgers J, Spizzo T, Duesterhoeft S, Eide D. 1998. Regulation of zinc homeostasis in yeast by binding of the ZAP1 transcriptional activator to zinc-responsive promoter elements. J Biol Chem 273:28713–28720.
  • Zhao H, Eide D. 1996a. The yeast ZRT1 gene encodes the zinc transporter protein of a high-affinity uptake system induced by zinc limitation. Proc Natl Acad Sci USA 93:2454–2458.
  • Zhao H, Eide D. 1996b. The ZRT2 gene encodes the low affinity zinc transporter in Saccharomyces cerevisiae. J Biol Chem 271:23203–23210.
  • Zhao H, Eide DJ. 1997. Zap1p, a metalloregulatory protein involved in zinc-responsive transcriptional regulation in Saccharomyces cerevisiae. Mol Cell Biol 17:5044–5052.