REFERENCES
- Reyes D R, Iossifidis D, Auroux P A, et al, Micro total analysis systems. 1. Introduction, theory and technology. Anal Chem. 2002; 74: 2623–36. [PUBMED], [INFOTRIEVE]
- Auroux P A, Iossifidis D, Reyes D R. Micro total analysis systems. 2. Analytical standard operations and applications. Anal Chem. 2002; 74: 2637–52. [PUBMED], [INFOTRIEVE]
- Mullis K B, Faloona F A. Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction. Methods Enzymol. 1987; 155: 335–50. [PUBMED], [INFOTRIEVE]
- Christopoulos T K. Polymerase chain reaction and other amplification systems, Meyers R A. Encyclopedia of Analytical Chemistry. Pp. 5159–73, ChichesterUK, Wiley. 2000
- Wilding P, Shoffner M A, Kricka L J. PCR in a silicon microstructure. Clin Chem. 1994; 40: 1815–8. [PUBMED], [INFOTRIEVE]
- Wilding P, Shoffner M A, Cheng J, et al, Thermal cycling and surface passivation of micromachined devices for PCR. Clin Chem. 1995; 41: 1367–8
- Shoffner M A, Cheng J, Hvichia G E, et al, Chip PCR. I. Surface passivation of microfabricated silicon-glass chips for PCR. Nucleic Acids Res. 1996; 24: 375–9. [PUBMED], [INFOTRIEVE]
- Cheng J, Shoffner M A, Hvichia G E, et al, Chip PCR. II. Investigation of different PCR amplification systems in microfabricated silicon-glass chips. Nucleic Acids Res. 1996; 24: 380–5. [PUBMED], [INFOTRIEVE]
- Giordano B C, Ferrance J, Swedberg S, et al, Polymerase chain reaction in polymeric microchips: DNA amplification in less than 240 seconds. Anal Biochem. 2001; 291: 124–32. [PUBMED], [INFOTRIEVE]
- Khandurina J, McKnight T E, Jacobson S C, et al, Integrated system for rapid PCR-based DNA analysis in microfluidic devices. Anal Chem. 2000; 72: 2995–3000. [PUBMED], [INFOTRIEVE]
- Obeid P J, Christopoulos T K, Crabtree H J, et al, Microfabricated device for DNA and RNA amplification by continuous-flow polymerase chain reaction and reverse transcription chain reaction with cycle number selection. Anal Chem. 2003; 75: 288–95. [PUBMED], [INFOTRIEVE]
- Cheng J, Waters L C, Fortina P, et al, Degenerate oligonucleotide primed-polymerase chain reaction and capillary electrophoresis analysis of human DNA on microchip-based devices. Anal Biochem. 1998; 257: 101–6. [PUBMED], [INFOTRIEVE]
- Lee T M, Hsing I M, Lao A I, et al, A miniaturized DNA amplifier: Its application in traditional Chinese medicine. Anal Chem. 2000; 72: 4242–7. [PUBMED], [INFOTRIEVE]
- Oda R P, Strausbauch M A, Huhmer A F, et al, Infrared-mediated thermocycling for ultrafast polymerase chain reaction amplification of DNA. Anal Chem. 1998; 70: 4361–8. [PUBMED], [INFOTRIEVE]
- Zhang N, Tan H, Yeung E S.. Automated and integrated system for high-throughput DNA genotyping directly from blood. Anal Chem. 1999; 71: 1138–45. [PUBMED], [INFOTRIEVE]
- Li H, Xue G, Yeung E S. Selective detection of individual DNA molecules by capillary polymerase chain reaction. Anal Chem. 2001; 73: 1537–43. [PUBMED], [INFOTRIEVE]
- Wilding P, Kricka L J, Cheng J, et al, Integrated cell isolation and polymerase chain reaction analysis using silicon microfilter chambers. Anal Biochem. 1998; 257: 95–100. [PUBMED], [INFOTRIEVE]
- Woolley A T, Hadley D, Landre P, et al, Functional integration of PCR amplification and capillary electrophoresis in a microfabricated DNA analysis device. Anal Chem. 1996; 68: 4081–6. [PUBMED], [INFOTRIEVE]
- Waters L C, Jacobson S C, Kroutchinina N, et al, Multiple sample PCR amplification and electrophoretic analysis on a microchip. Anal Chem. 1998; 70: 5172–6. [PUBMED], [INFOTRIEVE]
- Lagally E T, Simpson P C, Mathies R A. Monolithic integrated microfluidic DNA amplification and capillary electrophoresis analysis system. Sens Actuators B. 2000; 63: 138–46
- Lagally E T, Medintz I, Mathies R A. Single-molecule DNA amplification and analysis in an integrated microfluidic device. Anal Chem. 2001; 73: 565–70. [PUBMED], [INFOTRIEVE]
- Hong J W, Fujii T, Seki M, et al, Integration of gene amplification and capillary gel electrophoresis on a polydimethylsiloxane-glass hybrid microchip. Electrophoresis. 2001; 22: 328–33. [PUBMED], [INFOTRIEVE]
- Liu Y, Rauch C B, Stevens R L, et al, DNA amplification and hybridization assays in integrated plastic monolithic devices. Anal Chem. 2002; 74: 3063–70. [PUBMED], [INFOTRIEVE]
- Northrup M A, Benett B, Hadley D, et al, A miniature analytical instrument for nucleic acids based on micromachined silicon reaction chambers. Anal Chem. 1998; 70: 918–22. [PUBMED], [INFOTRIEVE]
- Ibrahim M S, Lofts R S, Jahrling P B, et al, Real-time microchip PCR for detecting single-base differences in viral and human DNA. Anal Chem. 1998; 70: 2013–7. [PUBMED], [INFOTRIEVE]
- Belgrader P, Benett W, Hadley D, et al, Rapid pathogen detection using a microchip PCR array instrument. Clin Chem. 1998; 44: 2191–4. [PUBMED], [INFOTRIEVE]
- Belgrader P, Benett W, Hadley D, et al, PCR detection of bacteria in seven minutes. Science. 1999; 284: 449–50. [PUBMED], [INFOTRIEVE]
- Nagai H, Murakami Y, Yokoyama K, et al, High-throughput PCR in silicon based microchamber array. Biosens Bioelectron. 2001; 16: 1015–9. [PUBMED], [INFOTRIEVE]
- Trau D, Lee T M, Lao A I, et al, Genotyping on a complementary metal oxide semiconductor silicon polymerase chain reaction chip with integrated DNA microarray. Anal Chem. 2002; 74: 3168–73. [PUBMED], [INFOTRIEVE]
- Kopp M U, de, Mello A J, Manz A. Chemical amplification: Continuous-flow PCR on a chip. Science. 1998; 280: 1046–8. [PUBMED], [INFOTRIEVE]
- Liu J, Enzelberger M, Quake S A. Nanoliter rotary device for polymerase chain reaction. Electrophoresis. 2002; 23: 1531–36. [PUBMED], [INFOTRIEVE]
- Chiou J, Matsudaira P, Sonin A, et al, A closed-cycle capillary polymerase chain reaction machine. Anal Chem. 2001; 73: 2018–21. [PUBMED], [INFOTRIEVE]
- Curcio M, Roeraade J. Continuous segmented-flow polymerase chain reaction for high-throughput miniaturized DNA amplification. Anal Chem. 2003; 75: 1–7. [PUBMED], [INFOTRIEVE]
- Burns M A, Johnson B N, Brahmasandra S N, et al, An integrated nanoliter DNA analysis device. Science. 1998; 282: 484–7. [PUBMED], [INFOTRIEVE]
- Anderson R C, Su X, Bogdan G J, et al, A miniature integrated device for automated multistep genetic assays. Nucleic Acids Res. 2000; 28: E60, [PUBMED], [INFOTRIEVE]
- Terry S C, Jerman J H, Angell J B, et al, A gas chromatographic air analyzer fabricated on a silicon wafer. IEEE Trans Electron Devices. 1979; 26: 1880–6
- Manz A, Graber N, Widmer H M. Miniaturized total chemical analysis systems: A novel concept for chemical sensing. Sens Actuators B. 1990; 1: 244–8
- Effenhauser C S, Manz A, Widmer H M. Glass chips for high-speed capillary electrophoresis separations with submicrometer plate heights. Anal Chem. 1993; 65: 2637–42
- Effenhauser C S, Paulus A, Manz A, et al, High-speed separation of antisense oligonucleotides on a micromachined capillary electrophoresis device. Anal Chem. 1994; 66: 2949–53
- Effenhauser C S, Bruin G JM, Paulus A. Integrated chip-based capillary electrophoresis. Electrophoresis. 1997; 18: 2203–13. [PUBMED], [INFOTRIEVE]
- Harrison D J, Manz A, Fan Z, et al, Capillary electrophoresis and sample injection systems integrated on a planar glass chip. Anal Chem. 1992; 64: 1926–32
- Jacobson S C, Hergenroder R, Koutny L B, et al, Effects of injection schemes and column geometry on the performance of microchip electrophoresis devices. Anal Chem. 1994; 66: 1107–13
- Jacobson S C, Hergenroder R, Koutny L B, et al, High-speed separations on a microchip. Anal Chem. 1994; 66: 1114–8
- Manz A, Harrison D J, Verpoorte E MJ, et al, Planar chips technology for miniaturization and integration of separation techniques into monitoring systems. Capillary electrophoresis on a chip. J Chromatogr. 1992; 593: 253–8
- Manz A, Verpoorte E, Effenhauser C S, et al, Miniaturization of separation techniques using planar chip technology. J High Resolut Chromatogr. 1993; 16: 433–6
- Manz A, Verpoorte E, Effenhauser C S, et al, Planar chip technology for capillary electrophoresis. Fresenius' J Anal Chem. 1994; 348: 567–71
- Woolley A T, Mathies R A. Ultra-high-speed DNA fragment separations using microfabricated capillary array electrophoresis chips. Proc Natl Acad Sci USA. 1994; 91: 11348–52. [PUBMED], [INFOTRIEVE]
- McCormick R M, Nelson R J, Alonso-Amigo M G, et al, Microchannel electrophoretic separations of DNA in injection-molded plastic substrates. Anal Chem. 1997; 69: 2626–30. [PUBMED], [INFOTRIEVE]
- Effenhauser C S, Gerard J MB, Paulus A, et al, Integrated capillary electrophoresis on flexible silicone microdevices: Analysis of DNA restriction fragments and detection of single DNA molecules on microchips. Anal Chem. 1997; 69: 3451–7
- Duffy D C, McDonald J C, Schueller O JA, et al, Rapid prototyping of microfluidic systems in poly(dimethylsiloxane). Anal Chem. 1998; 70: 4974–84
- Ronai Z, Barta C, Sasvari-Szekely M, et al, DNA analysis on electrophoretic microchips: Effect of operational variables. Electrophoresis. 2001; 22: 294–9. [PUBMED], [INFOTRIEVE]
- Ogura M, Agata Y, Watanabe K, et al, RNA chip: Quality assessment of RNA by microchannel linear gel electrophoresis in injection-molded plastic chips. Clin Chem. 1998; 44: 2249–55. [PUBMED], [INFOTRIEVE]
- Woolley A T, Sensabaugh G F, Mathies R A. High-speed DNA genotyping using microfabricated capillary array electrophoresis chips. Anal Chem. 1997; 69: 2181–6. [PUBMED], [INFOTRIEVE]
- Simpson P C, Roach D, Woolley A T, et al, High-throughput genetic analysis using microfabricated 96-sample capillary array electrophoresis microplates. Proc Natl Acad Sci USA. 1998; 95: 2256–61. [PUBMED], [INFOTRIEVE]
- Schmalzing D, Koutny L, Adourian A, et al, DNA typing in thirty seconds with a microfabricated device. Proc Natl Acad Sci USA. 1997; 94: 10273–8. [PUBMED], [INFOTRIEVE]
- Schmalzing D, Koutny L, Chisholm D, et al, Two-color multiplexed analysis of eight short tandem repeat loci with an electrophoretic microdevice. Anal Biochem. 1999; 270: 148–52. [PUBMED], [INFOTRIEVE]
- Shi Y, Simpson P C, Scherer J R, et al, Radial capillary array electrophoresis microplate and scanner for high-performance nucleic acid analysis. Anal Chem. 1999; 71: 5354–61. [PUBMED], [INFOTRIEVE]
- Emrich C A, Tian H, Medintz I L, et al, Microfabricated 384-lane capillary array electrophoresis bioanalyzer for ultrahigh-throughput genetic analysis. Anal Chem. 2002; 74: 5076–83. [PUBMED], [INFOTRIEVE]
- Gelfi C, Curcio M, Righetti P G, et al, Surface modification based on Si-O and Si-C sublayers and a series of N-substituted acrylamide top-layers for capillary electrophoresis. Electrophoresis. 1998; 10: 1677–82
- Tian H, Brody L C, Mao D, et al, Effective capillary electrophoresis-based heteroduplex analysis through optimization of surface coating and polymer networks. Anal Chem. 2000; 72: 5483–92. [PUBMED], [INFOTRIEVE]
- Gao Q, Yeung E S. A matrix for DNA separation: Genotyping and sequencing using poly(vinylpyrrolidone) solution in uncoated capillaries. Anal Chem. 1998; 70: 1382–8. [PUBMED], [INFOTRIEVE]
- Liang D, Song L, Zhou S, et al, Poly(N-isopropylacrylamide)-g-poly(ethyleneoxide) for high resolution and high speed separation of DNA by capillary electrophoresis. Electrophoresis. 1999; 20: 2856–63. [PUBMED], [INFOTRIEVE]
- Tian H, Landers J P. Hydroxyethylcellulose as an effective polymer network for DNA analysis in uncoated glass microchips: Optimization and application to mutation detection via heteroduplex analysis. Anal Biochem. 2002; 309: 212–23. [PUBMED], [INFOTRIEVE]
- Sanders J C, Breadmore M C, Kwok Y C, et al, Hydroxypropyl cellulose as an adsorptive coating sieving matrix for DNA separations: Artificial neural network optimization for microchip analysis. Anal Chem. 2003; 75: 986–94. [PUBMED], [INFOTRIEVE]
- Sanger F, Nicklen S, Coulson A R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA. 1977; 74: 5463–7. [PUBMED], [INFOTRIEVE]
- Swerdlow H, Gesteland R. Capillary gel electrophoresis for rapid, high resolution DNA sequencing. Nucleic Acids Res. 1990; 18: 1415–9. [PUBMED], [INFOTRIEVE]
- Luckey J A, Drossman H, Kostichka A J, et al, High speed DNA sequencing by capillary electrophoresis. Nucleic Acids Res. 1990; 18: 4417–21. [PUBMED], [INFOTRIEVE]
- Cohen A S, Najarian D R, Krager B L.. Separation and analysis of DNA sequence reaction products by capillary gel electrophoresis. J Chromatogr. 1990; 516: 49–60. [PUBMED], [INFOTRIEVE]
- Woolley A T, Mathies R A. Ultra-high-speed DNA sequencing using capillary electrophoresis chips. Anal Chem. 1995; 67: 3676–80. [PUBMED], [INFOTRIEVE]
- Liu S, Shi Y, Ja W W, et al, Optimization of high-speed DNA sequencing on microfabricated capillary electrophoresis channels. Anal Chem. 1999; 71: 566–73. [PUBMED], [INFOTRIEVE]
- Liu S, Ren H, Gao Q, et al, Automated parallel DNA sequencing on multiple channel microchips. Proc Natl Acad Sci USA. 2000; 97: 5369–74. [PUBMED], [INFOTRIEVE]
- Backhouse C, Caamano M, Oaks F, et al, DNA sequencing in a monolithic microchannel device. Electrophoresis. 2000; 21: 150–6. [PUBMED], [INFOTRIEVE]
- Koutny L, Schmalzing D, Salas-Solano O, et al, Eight hundred-base sequencing in a microfabricated electrophoretic device. Anal Chem. 2000; 72: 3388–91. [PUBMED], [INFOTRIEVE]
- Paegel B M, Hutt L D, Simpson P C, et al, Turn geometry for minimizing band broadening in microfabricated capillary electrophoresis channels. Anal Chem. 2000; 72: 3030–7. [PUBMED], [INFOTRIEVE]
- Paegel B M, Emrich C A, Wedemayer G J, et al, High throughput DNA sequencing with a microfabricated 96-lane capillary array electrophoresis bioprocessor. Proc Natl Acad Sci USA. 2002; 99: 574–9. [PUBMED], [INFOTRIEVE]
- Seiler K, Harrison D J, Manz A. Planar glass chips for capillary electrophoresis: Repetitive sample injection, quantitation, and separation efficiency. Anal Chem. 1993; 65: 1481–8
- Kasicka V, Prusik Z, Gas B, et al, Contribution of capillary coiling to zone dispersion in capillary zone electrophoresis. Electrophoresis. 1995; 16: 2034–8. [PUBMED], [INFOTRIEVE]
- Paegel B M, Yeung S HI, Mathies R A. Microchip bioprocessor for integrated nanovolume sample purification and DNA sequencing. Anal Chem. 2002; 74: 5092–8. [PUBMED], [INFOTRIEVE]
- Crabtree H J, Bay S J, Lewis D F, et al, Construction and evaluation of a capillary array DNA sequencer based on a micromachined sheath-flow cuvette. Electrophoresis. 2000; 21: 1329–35. [PUBMED], [INFOTRIEVE]
- Pang H, Yeung E S. Automated one-step DNA sequencing based on nanoliter reaction volumes and capillary electrophoresis. Nucleic Acids Res. 2000; 28: E73, [PUBMED], [INFOTRIEVE]
- Hanning A, Linderberg P, Westberg J, et al, Laser-induced fluorescence detection by liquid core waveguiding applied to DNA sequencing by capillary electrophoresis. Anal Chem. 2000; 72: 3423–30. [PUBMED], [INFOTRIEVE]
- Dynal A S. Biomagnetic Techniques in Molecular Biology, 3rd ed., OsloNorway, Dynal Corp. 1998
- Fan Z H, Mangu S, Granzow R, et al, Dynamic DNA hybridization on a chip using paramagnetic beads. Anal Chem. 1999; 71: 4851–9. [PUBMED], [INFOTRIEVE]
- Cheng J, Sheldon E L, Wu L, et al, Preparation and hybridization analysis of DNA/RNA from E. coli on microfabricated bioelectronic chips. Nat Biotechnol. 1998; 16: 541–6. [PUBMED], [INFOTRIEVE]
- Southern E M. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol. 1975; 98: 503–17. [PUBMED], [INFOTRIEVE]
- Fodor S PA, Read J L, Pirrung M C, et al, Light-directed, spatially addressable parallel chemical synthesis. Science. 1991; 251: 767–73. [PUBMED], [INFOTRIEVE]
- Pease A C, Solas D, Sullivan E J, et al, Light-generated oligonucleotide arrays for rapid DNA sequence analysis. Proc Natl Acad Sci USA. 1994; 91: 5022–6. [PUBMED], [INFOTRIEVE]
- McGall G H, Fidanza J A. Photo-lithographic synthesis of arrays. Methods Mol Biol. 2001; 170: 71–101. [PUBMED], [INFOTRIEVE]
- Lipshutz R J, Fodor S P, Gingeras T R, et al, High density synthetic oligonucleotide arrays. Nat Genet. 1999; S 21: 20–4
- Lockhart D J, Dong H, Byrne M C, et al, Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat Biotechnol. 1996; 14: 1675–80. [PUBMED], [INFOTRIEVE]
- Chee M, Yang R, Hubbell E, et al, Accessing genetic information with high-density DNA arrays. Science. 1996; 274: 610–4. [PUBMED], [INFOTRIEVE]
- Wodicka L, Dong H, Mittmann M, et al, Genome-wide expression monitoring in Saccharomyces cerevisiae. Nat Biotechnol. 1997; 15: 1359–67. [PUBMED], [INFOTRIEVE]
- Gunderson K L, Huang X C, Morris M S, et al, Mutation detection by ligation to complete n-mer DNA arrays. Genome Res. 1998; 8: 1142–53. [PUBMED], [INFOTRIEVE]
- Harrington C A, Rosenow C, Retief J. Monitoring gene expression using DNA microarrays. Curr Opin Microbiol. 2000; 3: 285–91. [PUBMED], [INFOTRIEVE]
- Howard F B, Miles H T. 2-NH2A:T helices in the ribo- and deoxypolynucleotide series. Structural and energetic consequences of NH2A substitution. Biochemistry. 1984; 23: 6723–32. [PUBMED], [INFOTRIEVE]
- Gryaznov S, Schultz R G. Stabilization of DNA:DNA and DNA:RNA duplexes by substitution of 2′-deoxyadenosine with 2′-deoxy-2-aminoadenosine. Tetrahedron Lett. 1994; 35: 2489–92
- Fidanza J A, McGall G H. High-density nucleoside analog probe arrays for enhanced hybridization. Nucleosides Nucleotides. 1999; 18: 1293–5. [PUBMED], [INFOTRIEVE]
- Schena M, Shalon D, Davis R W, et al, Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science. 1995; 270: 467–70. [PUBMED], [INFOTRIEVE]
- Schena M. Genome analysis with gene expression microarrays. Bioessays. 1996; 18: 427–31. [PUBMED], [INFOTRIEVE]
- Schena M, Shalon D, Heller R, et al, Parallel human genome analysis: Microarray-based expression monitoring of 1000 genes. Proc Natl Acad Sci USA. 1996; 93: 10614–9. [PUBMED], [INFOTRIEVE]
- Schena M, Heller R A, Theriault T P, et al, Microarrays: Biotechnology's discovery platform for functional genomics. Trends Biotech. 1998; 16: 301–6
- Shalon D, Smith S J, Brown P O. A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization. Genome Res. 1996; 6: 639–45. [PUBMED], [INFOTRIEVE]
- DeRisi J L, Iyer V R, Brown P O. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science. 1997; 278: 680–6. [PUBMED], [INFOTRIEVE]
- Pollack J R, Perou C M, Alizadeh A A, et al, Genome-wide analysis of DNA copy-number changes using cDNA microassays. Nat Genet. 1999; 23: 41–6. [PUBMED], [INFOTRIEVE]
- Marshall A, Hodgson J. DNA chips: An array of possibilities. Nat Biotechnol. 1998; 16: 27–31. [PUBMED], [INFOTRIEVE]
- Okamoto T, Suzuki T, Yamamoto N. Microarray fabrication with covalent attachment of DNA using bubble jet technology. Nat Biotechnol. 2000; 18: 438–41. [PUBMED], [INFOTRIEVE]
- Cooley P, Hinson D, Trost H J, et al, Ink-jet-deposited microarrays of DNA and other bioactive molecules. Methods Mol Biol. 2001; 170: 117–29. [PUBMED], [INFOTRIEVE]
- LeProust E, Pellois J P, Yu P, et al, Digital light-directed synthesis. A microarray platform that permits rapid reaction optimization on a combinatorial basis. J Comb Chem. 2000; 2: 349–54. [PUBMED], [INFOTRIEVE]
- Zammatteo N, Jeanmart L, Hamels S, et al, Comparison between different strategies of covalent attachment of DNA to glass surfaces to build DNA microarrays. Anal Biochem. 2000; 280: 143–50. [PUBMED], [INFOTRIEVE]
- Lindroos K, Liljedahl U, Raitio M, et al, Minisequencing on oligonucleotide microarrays: Comparison of immobilisation chemistries. Nucleic Acids Res. 2001; 29: E69, [PUBMED], [INFOTRIEVE]
- Call D R, Chandler D P, Brockman F. Fabrication of DNA microarrays using unmodified oligonucleotide probes. Biotechniques. 2001; 30: 368–76. [PUBMED], [INFOTRIEVE]
- LeProust E, Zhang H, Yu P, et al, Characterization of oligodeoxyribonucleotide synthesis on glass plates. Nucleic Acids Res. 2001; 29: 2171–80. [PUBMED], [INFOTRIEVE]
- Zhang Y, Price B D, Tetradis S, et al, Reproducible and inexpensive probe preparation for oligonucleotide arrays. Nucleic Acids Res. 2001; 29: E66, [PUBMED], [INFOTRIEVE]
- Vernon S D, Unger E R, Rajeevan M, et al, Reproducibility of alternative probe synthesis approaches for gene expression profiling with arrays. J Mol Diagn. 2000; 2: 124–7. [PUBMED], [INFOTRIEVE]
- Kane M D, Jatkoe T A, Stumpf C R, et al, Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays. Nucleic Acids Res. 2000; 28: 4552–7. [PUBMED], [INFOTRIEVE]
- Galbraith D W, Macas J, Pierson E A, et al, Printing DNA microarrays using the Biomek 2000 laboratory automation workstation. Methods Mol Biol. 2001; 170: 131–40. [PUBMED], [INFOTRIEVE]
- Stillman B A, Tonkinson J L. FAST slides: A novel surface for microarrays. Biotechniques. 2000; 29: 630–5. [PUBMED], [INFOTRIEVE]
- Hicks J S, Harker B W, Beattie K L, et al, Modification of an automated liquid-handling system for reagent-jet, nanoliter-level dispensing. Biotechniques. 2001; 30: 878–85. [PUBMED], [INFOTRIEVE]
- Hughes T R, Mao M, Jones A R, et al, Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer. Nat Biotechnol. 2001; 19: 342–7. [PUBMED], [INFOTRIEVE]
- Mir K U, Southern E M. Determining the influence of structure on hybridization using oligonucleotide arrays. Nat Biotechnol. 1999; 17: 788–92. [PUBMED], [INFOTRIEVE]
- Maldonado-Rodriguez R, Beattie K L. Analysis of nucleic acids by tandem hybridization on oligonucleotide microarrays. Methods Mol Biol. 2001; 170: 157–71. [PUBMED], [INFOTRIEVE]
- Belosludtsev Y, Belsludtsev I, Iverson B, et al, Nearly instantaneous, cation-independent, high selectivity nucleic acid hybridization to DNA microarrays. Biochem Biophys Res Commun. 2001; 282: 1263–7. [PUBMED], [INFOTRIEVE]
- Dixon A E, Damaskinos S. Confocal scanning of genetic microarrays. Methods Mol Biol. 2001; 170: 237–46. [PUBMED], [INFOTRIEVE]
- Waddell E, Wang Y, Stryjewski W, et al, High resolution near-infrared imaging of DNA microarrays with time-resolved acquisition of fluorescence lifetimes. Anal Chem. 2000; 72: 5907–17. [PUBMED], [INFOTRIEVE]
- Nelson B P, Grimsrud T E, Liles M R, et al, Surface plasmon resonance imaging measurements of DNA and RNA hybridization adsorption onto DNA microarrays. Anal Chem. 2001; 73: 1–7. [PUBMED], [INFOTRIEVE]
- van De, Rijke F, Zijlmans H, Li S, et al, Up-converting phosphor reporters for nucleic acid microarrays. Nat Biotechnol. 2001; 19: 273–6. [PUBMED], [INFOTRIEVE]
- Stears R L, Getts R C, Gullans S R. A novel, sensitive detection system for high-density microarrays using dendrimer technology. Physiol Genomics. 2000; 3: 93–9. [PUBMED], [INFOTRIEVE]
- Battaglia C, Salani G, Consolandi C, et al, Analysis of DNA microarrays by non-destructive fluorescent staining using SYBR green II. Biotechniques. 2000; 29: 78–81. [PUBMED], [INFOTRIEVE]
- Seo J, Kim M, Kim J. Identification of novel genes differentially expressed in PMA-induced HL-60 cells using cDNA microarrays. Mol Cells. 2000; 10: 733–9. [PUBMED], [INFOTRIEVE]
- Cossman J. Gene expression analysis of single neoplastic cells and the pathogenesis of Hodgkin's lymphoma. J Histochem Cytochem. 2001; 49: 799–800. [PUBMED], [INFOTRIEVE]
- Brem R, Certa U, Neeb M, et al, Global analysis of differential gene expression after transformation with the v-H-ras oncogene in a murine tumor model. Oncogene. 2001; 20: 2854–8, Erratum. Oncogene 2001; 20: 4916. [PUBMED], [INFOTRIEVE]
- Kannan K, Dazard J-E, Kela I, et al, DNA microarrays identification of primary and secondary target genes regulated by p53. Oncogene. 2001; 20: 2225–34. [PUBMED], [INFOTRIEVE]
- Graveel C R, Jatkoe T, Madore S J, et al, Expression profiling and identification of novel genes in hepatocellular carcinomas. Oncogene. 2001; 20: 2704–12. [PUBMED], [INFOTRIEVE]
- Okabe H, Satoh S, Kato T, et al, Genome-wide analysis of gene expression in human hepatocellular carcinomas using cDNA microarray: Identification of genes involved in viral carcinogenesis and tumor progression. Cancer Res. 2001; 61: 2129–37. [PUBMED], [INFOTRIEVE]
- Kitahara O, Furukawa Y, Tanaka T, et al, Alterations of gene expression during colorectal carcinogenesis revealed by cDNA microarrays after laser-capture microdissection of tumor tissues and normal epithelia. Cancer Res. 2001; 61: 3544–9. [PUBMED], [INFOTRIEVE]
- Monni O, Barlund M, Mousses S, et al, Comprehensive copy number and gene expression profiling of the 17q23 amplicon in human breast cancer. Proc Natl Acad Sci USA. 2001; 98: 5711–6. [PUBMED], [INFOTRIEVE]
- Perou C M, Jeffrey S S, van de, Rijn M, et al, Distinct gene expression patterns in human mammary epithelial cells and breast cancers. Proc Natl Acad Sci USA. 1999; 96: 9212–7. [PUBMED], [INFOTRIEVE]
- Perou C M, Sorlie T, Eisen M B, et al, Molecular portraits of human breast tumors. Nature. 2000; 406: 747–52. [PUBMED], [INFOTRIEVE]
- Alon U, Barkai N, Notterman D A, et al, Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proc Natl Acad Sci USA. 1999; 96: 6745–50. [PUBMED], [INFOTRIEVE]
- Chen C C, Shieh B, Jin Y T, et al, Microarray profiling of gene expression patterns in bladder tumor cells treated with genistein. J Biomed Sci. 2001; 8: 214–22. [PUBMED], [INFOTRIEVE]
- Wikman F P, Lu M L, Thykjaer T, et al, Evaluation of the performance of a p53 sequencing microarray chip using 140 previously sequenced bladder tumor samples. Clin Chem. 2000; 46: 1555–61. [PUBMED], [INFOTRIEVE]
- Shirota Y, Kaneko S, Honda M, et al, Identification of differentially expressed genes in hepatocellular carcinoma with cDNA microarrays. Hepatology. 2001; 33: 832–40. [PUBMED], [INFOTRIEVE]
- Khan J, Simon R, Bittner M, et al, Gene expression profiling of alveolar rhabdomyosarcoma with cDNA microarrays. Cancer Res. 1998; 58: 5009–13. [PUBMED], [INFOTRIEVE]
- Pandita A, Zielenska M, Thorner P, et al, Application of comparative genomic hybridization, spectral karyotyping, and microarray analysis in the identification of subtype-specific patterns of genomic changes in rhabdomyosarcoma. Neoplasia. 1999; 1: 262–75. [PUBMED], [INFOTRIEVE]
- Scholl F A, Betts D R, Niggli F K, et al, Molecular features of a human rhabdomyosarcoma cell line with spontaneous metastatic progression. Br J Cancer. 2000; 82: 1239–45. [PUBMED], [INFOTRIEVE]
- Ross D T, Scherf U, Eisen M B, et al, Systematic variation in gene expression patterns in human cancer cell lines. Nat Genet. 2000; 24: 227–35. [PUBMED], [INFOTRIEVE]
- Gerhold D, Lu M, Xu J, et al, Monitoring expression of genes involved in drug metabolism and toxicology using DNA microarrays. Physiol Genomics. 2001; 5: 161–70. [PUBMED], [INFOTRIEVE]
- Chen H, Liu J, Merrick B A, et al, Genetic events associated with arsenic-induced malignant transformation: Applications of cDNA microarray technology. Mol Carcinogen. 2001; 30: 79–87
- Debouck C, Goodfellow P N. DNA microarray in drug discovery and development. Nat Genet. 1999; 21: 48–50. [PUBMED], [INFOTRIEVE]
- Scherf U, Ross D T, Waltham M, et al, A gene expression database for the molecular pharmacology of cancer. Nat Genet. 2000; 24: 236–44. [PUBMED], [INFOTRIEVE]
- Mehrotra J, Bishai W R. Regulation of virulence genes in Mycobacterium tuberculosis. Int J Med Microbiol. 2001; 291: 171–82. [PUBMED], [INFOTRIEVE]
- Simmen K A, Singh J, Luukkonen B G, et al, Global modulation of cellular transcription by human cytomegalovirus is initiated by viral glycoprotein B. Proc Natl Acad Sci USA. 2001; 98: 7140–5. [PUBMED], [INFOTRIEVE]
- Kagnoff M F, Eckmann L. Analysis of host responses to microbial infection using gene expression profiling. Curr Opin Microbiol. 2001; 4: 246, [PUBMED], [INFOTRIEVE]
- Coombes B K, Mahony J B. cDNA array analysis of altered gene expression in human endothelial cells in response to Chlamydia pneumoniae infection. Infect Immun. 2001; 69: 1420–7. [PUBMED], [INFOTRIEVE]
- Cavallaro S, Schreus B G, Zhao W, et al, Gene expression profiles during long-term memory consolidation. Eur J Neurosci. 2001; 13: 1809–15. [PUBMED], [INFOTRIEVE]
- Zirlinger M, Kreiman G, Anderson D J, et al, Amygdala-enriched genes identified by microarray technology are restricted to specific amygdaloid subnuclei. Proc Natl Acad Sci USA. 2001; 98: 5270–5. [PUBMED], [INFOTRIEVE]
- Hacia J G, Fan J B, Ryder O, et al, Determination of ancestral alleles for human single-nucleotide polymorphisms using high-density oligonucleotide arrays. Nat Genet. 1999; 22: 164–7. [PUBMED], [INFOTRIEVE]
- Raitio M, Lindroos K, Laukkanen M, et al, Y-chromosomal SNPs in Finno-Ugric-speaking populations analyzed by minisequencing on microarrays. Genome Res. 2001; 11: 471–82. [PUBMED], [INFOTRIEVE]
- Mahalingam R, Fedoroff N. Screening insertion libraries for mutations in many genes simultaneously using DNA microarrays. Proc Natl Acad Sci USA. 2001; 98: 7420–5. [PUBMED], [INFOTRIEVE]
- Bulyk M L, Huang X, Choo Y, et al, Exploring the DNA-binding specificities of zinc fingers with DNA microarrays. Proc Natl Acad Sci USA. 2001; 98: 7158–63. [PUBMED], [INFOTRIEVE]
- Miki R, Kadota K, Bono H, et al, Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 full-length enriched mouse cDNA arrays. Proc Natl Acad Sci USA. 2001; 98: 2199–204. [PUBMED], [INFOTRIEVE]
- Kim S K, Lund J, Kiraly M, et al, A gene expression map for Caenorhabditis elegans. Science. 2001; 293: 2087–92. [PUBMED], [INFOTRIEVE]