Molecular characterization of the complete mitochondrial genome sequence of Indian wild pig (Sus scrofa cristatus)

References

• Wu GS, Yao YG, Qu KX. Population phylogenomic analysis of mitochondrial DNA in wild boars and domestic pigs reveled multiple domestication events in East Asia. Genome Biol. 2007;8:R245.
   PubMed Web of Science ®Google Scholar
• Larson G, Dobney K, Albarella U, et al. Worldwide phylogeography of wild boar reveals multiple centers of pig domestication. Science. 2005;11:1618–1621.
   Google Scholar
• Ajit PS, Kajal KJ, Dharmendra K, Nidhi R, Awadh BS, Bikash CS. Complete mitochondrial genome sequencing of central Indian domestic pig. Mitochondr DNA B. 2016;1:949–950.
   Web of Science ®Google Scholar
• Jadav KK, Rajput N, Singh AP, Sarkhel BC, Shrivastav AB. A species-specific ARMS PCR test for detection of Indian wild pig DNA. Ind J Anim Sci. 2016;86:67–69.
   Web of Science ®Google Scholar
• Jadav KK, Shrivastav AB, Rajput N. Development of molecular tools to differentiate Indian wild pig (Sus scrofa cristatus) meat from exotic and local domestic pig meat. Vet World. 2013;6:919–922.
   Google Scholar
• Gupta SK, Kumar A, Hussain SA, Viplin, Singh L. Cytochrome b based genetic differentiation of Indian wild pig (Sus scrofa cristatus) and domestic pig (Sus scrofa domestica) and its use in wildlife forensics. Sci Justice. 2013;53:220–222.
   PubMed Web of Science ®Google Scholar
• Jadav K, Rajput N, Shrivastav AB, Sanju M, Gaurav S. Application of 12S rRNA gene sequence for identification of Indian wild pig (Sus scrofa cristatus). J Meat Sci Tech. 2014;2:79–84.
   Google Scholar
• Srivastava GK, Rajput N, Jadav KK, Shrivastav AB, Joshi HR.Single nucleotide markers of D-loop for identification of Indian wild pig (Sus scrofa cristatus). Proc Natl Acad Sci USA. 2015;8:532–536.
   Google Scholar
• Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol. 2013;30:2725–2729.
   PubMed Web of Science ®Google Scholar
• Bernt M, Donath AFJ, Externbrink FC, et al. MITOS: Improved de novo Metazoan Mitochondrial Genome Annotation. Mol Phylogenet Evol. 2013;69:313–319.
   PubMed Web of Science ®Google Scholar
• Burland TG. DNASTAR’s Lasergene sequence analysis software. Methods Mol Biol. 2000;132:71–91.
   PubMedGoogle Scholar
• Perna NT and Kocher T D. Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes. J Mol Evol. 1995;41:353–358.
   PubMed Web of Science ®Google Scholar
• Saitou N, Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987;4:406–425.
   PubMed Web of Science ®Google Scholar
• Tamura K, Nei M, Kumar S. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci USA. 2004;101:11030–11035.
   PubMed Web of Science ®Google Scholar
• Tamura K, Kumar, S. Evolutionary distance estimation under heterogeneous substitution pattern among lineages. Mol Biol Evol. 2002;19:1727–1736.
   PubMed Web of Science ®Google Scholar
• Zheng Z, Scott S, Lukas W, Webb M. A greedy algorithm for aligning DNA sequences. J Comput Biol. 2000;7:203–224.
   PubMed Web of Science ®Google Scholar
• Sérgio Luiz P. Mitochondrial genome organization and vertebrate phylogenetics Genet Mol Biol. 2000;4:1678–4685.
   Google Scholar
• Bruford MW, Bradley DG, Luikart G. DNA markers reveal the complexity of livestock domestication. Nature Rev Genet. 2003;4:900–910.
   PubMed Web of Science ®Google Scholar
• Wang GD, Xie HB, Peng MS, Irwin D, Zhang YP. Domestication genomics: evidence from animals. Annu Rev Anim Biosci. 2014;2:65–84.
   PubMed Web of Science ®Google Scholar
• Karger BL, Guttman A. DNA sequencing by capillary electrophoresis. Electrophoresis. 2009;30:S196–S202. http://doi.org/10.1002/elps.200900218
   PubMedGoogle Scholar
• Hieu DN, Tuan AB, Phuong TN, Oanh TPK, Thuy TBV. The complete mitochondrial genome sequence of the indigenous I pig (Sus scrofa) in Vietnam. Asian-Aust J Anim Sci. 2017;30:930–937.
   PubMed Web of Science ®Google Scholar
• Chia-Hsuan C, Hsiu-Lin H, Hsiu-Ya Y, et al. Mitochondrial genome of Taiwan pig (Sus Scrofa). Afr J Biotechnol. 2011;10:2556–2561.
   Google Scholar
• Meiri M, Huchon D, Bar-Oz G, et al. Ancient DNA and population turnover in southern levantine pigs-signature of the sea peoples migration? Sci Rep. 2013;3:3035.
   PubMed Web of Science ®Google Scholar
• Yu G, Xiang H, Wang J, Zhao X. The phylogenetic status of typical Chinese native pigs: analyzed by Asian and European pig mitochondrial genome sequences. J Anim Sci Biotechnol. 2013;4(1):9.
   PubMedGoogle Scholar
• Fernández A, Alves E, Ovilo C, Rodríguez M, Silió L. Divergence time estimates of East Asian and European pigs based on multiple near complete mitochondrial DNA sequences. Anim Genet 2011;42:86–88.
   PubMed Web of Science ®Google Scholar
• Giuffra E, Kijas JM, Amarger V, Carlborg O, Jeon JT, Andersson L. The origin of the domestic pig: Independent domestication and subsequent introgression. Genetics. 2000;154:1785–1791.
   PubMed Web of Science ®Google Scholar
• Sofia PD, Amrita B, Siddhi P, et al. Low-depth shotgun sequencing resolves complete mitochondrial genome sequence of Labeo rohita, Mitochondrial DNA Part A, 2015;27(5):3517–3518.
   Google Scholar