Effects of 8-oxo-7,8-dihydro-2′-deoxyguanosine on the binding of the transcription factor Sp1 to its cognate target DNA sequence (GC box)

References

• Kasai H., Crain P.F., Kuchino Y., Nishimura S., Ootsuyama A., Tanooka H. Formation of 8-hydroxyguanine moiety in cellular DNA by agents producing oxygen radicals and evidence for its repair. Carcinogenesis 1986; 7: 1849–1851
   PubMed Web of Science ®Google Scholar
• Riley P.A. Free radicals in biology. Oxidative stress and the effects of ionizing radiation. International Journal of Radiation Biology 1994; 65: 27–33
   PubMed Web of Science ®Google Scholar
• Halliwell B., Gutteridge J.M.C. Free Radicals in Biology and Medicine2nd edn. Clarendon Press, Oxford 1989
   Google Scholar
• Davies K.J.A. Protein damage and degradation by oxygen radicals. Journal of Biological Chemistry 1987; 262: 9895–9901
   PubMed Web of Science ®Google Scholar
• Park J.W., Floyd R.A. Lipid peroxidation products mediate the formation of 8-oxodG in DNA. Free Radical Biology and Medicine 1992; 12: 245–250
   PubMed Web of Science ®Google Scholar
• Cadet, J., Berger, M., Morin, B., Raoul, S., Wagner, J.R. Oxidative damage to DNA. Analysis of Free Radicals in Biological Systems, Favier, et al. Birkhäuser Verlag, BaselSwitzerland 1995; 51–64
   Google Scholar
• von Sonntag C. The Chemical Basis of Radiation Biology. Taylor & Francis, London 1987
   Google Scholar
• Cadet J., Berger M., Douki T., Ravanat J-L. Oxidative damage to DNA: Formation, measurement and biological significance. Reviews of Physiology, Biochemistry and Pharmacology 1997; 131: 1–87
   PubMedGoogle Scholar
• Ames B.N. Endogenous oxidative DNA damage, aging and cancer. Free Radical Research Communications 1989; 7: 121–128
   PubMedGoogle Scholar
• Wood M.L., Dizdaroglu M., Gajewski E., Essigmann J.M. Mechanistic studies of ionizing radiation and oxidative mutagenesis: Genetic effects of a single 8-hydroxyguanine residue inserted at a unique site in a viral genome. Biochemistry 1990; 29: 7024–7032
   PubMed Web of Science ®Google Scholar
• Cheng K.C., Cahill D.S., Kasai H., Nishimura S., Loeb L.A. 8-hydroxyguanine, an abundant form of oxidative DNA damage, causes G → T and A → C substitutions. Journal of Biological Chemistry 1992; 267: 166–172
   PubMed Web of Science ®Google Scholar
• Floyd R.A. The role of 8-hydroxyguanine in carcinogenesis. Carcinogenesis 1990; 11: 1447–1450
   PubMed Web of Science ®Google Scholar
• Turk P.W., Laayoun A., Smith S., Weitzman S.A. DNA adduct 8-hydroxyl-2′-deoxyguanosine affects function of human DNA methyltransferase. Carcinogenesis 1995; 16: 1253–1255
   PubMed Web of Science ®Google Scholar
• MacLeod M.C., Powell K.L., Tran N. Binding of the transcription factor, Sp1, to non-target sites in DNA modified by benzo[a]pyrene diol epoxyde. Carcinogenesis 1995; 16: 975–983
   PubMed Web of Science ®Google Scholar
• Tjian R. Transcriptional activation: a puzzle with few easy pieces. Cell 1994; 77: 5–8
   PubMed Web of Science ®Google Scholar
• Gidoni D., Dynan W.S., Tjian R. Multiple specific contacts between a mammalian transcription factor and its cognate promoters. Nature 1984; 312: 409–413
   PubMed Web of Science ®Google Scholar
• Kadonaga J.T., Jones K.A., Tjian R. Promoter-specific activation of RNA polymerase II transcription by Sp1. Trends in Biochemical Sciences 1986; 11: 20–23
   Web of Science ®Google Scholar
• Kadonaga J.T., Courey A.J., Ladika J., Tjian R. Distinct regions of Sp1 modulate DNA binding and transcriptional activation. Science 1988; 242: 1566–1569
   PubMed Web of Science ®Google Scholar
• Ammendola R., Mesuraca M., Russo T., Cimino F. The DNA-Binding efficiency of Sp1 affected by. European Journal of Biochemistry 1994; 225: 483–489
   PubMedGoogle Scholar
• Schäfer D., Hamm-Künzelmann B., Hermfisse U., Brand K. Differences in DNA-binding efficiency of Sp1 to aldolase and pyruvate kinase promoter correlate with altered redox states in resting and proliferating rat thymocytes. FEBS Letters 1996; 391: 35–38
   PubMedGoogle Scholar
• Zeng J., Heuchel R., Schaffner W., Kägi J.G.R. Thionein can modulate DNA binding an transcription activation by zinc finger containing factor Sp1. FEBS Letters 1991; 279: 310–312
   PubMed Web of Science ®Google Scholar
• Knoepfel L., Steinkühler C, Carrl M., Rotilio G. Role of Zinc-coordination and of the glutathione redox couple in the redox susceptibility of human transcription factor Sp1. Biochemical and Biophysical Research Communications 1994; 1: 871–877
   Google Scholar
• Narayan V.A., Kriwacki R.W., Caradonna J.P. Structures of zinc finger domains from transcription faster Sp1. Journal of Biological Chemistry 1997; 272: 7801–7809
   PubMedGoogle Scholar
• Kuwahara J., Coleman J.E. Role of the Zinc(II) in the structure of the three-finger DNA-binding domain of the Sp1 transcription factor. Biochemistry 1990; 29: 8627–8631
   PubMedGoogle Scholar
• Nagaoka M., Kuwahara J., Sugiura Y. Alteration of DNA binding specificity by nickel(II) substitution in three zinc(II) fingers of transcription factor Sp1. Biochemical and Biophysical Research Communications 1993; 194: 1515–1520
   PubMedGoogle Scholar
• Thiesen H-J., Bach C. Transition metal modulate DNA-Protein interactions of Sp1 zinc finger domains with its cognate target site. Biochemical and Biophysical Research Communications 1991; 176: 551–557
   PubMedGoogle Scholar
• Thiesen H-J., Schröder B. Amino acid substitutions in the Sp1 zinc finger domain alter the DNA binding affinity to cognate Sp1 target site. Biochemical and Biophysical Research Communications 1991; 175: 333–338
   PubMedGoogle Scholar
• Shigenaga M.K., Ames B.N. Assays for 8-hydroxy-2′-deoxyguanosine: A biomarker on in vivo oxidative DNA damage. Free Radical Biology and Medicine 1991; 10: 211–216
   PubMed Web of Science ®Google Scholar
• Shigenaga M.K., Park J.-W., Cundy K.C., Gimeno C., Ames B.N. In vivo oxidative DNA damage: Measurement of 8-hydroxy-2′-deoxyguanosine in DNA and urine by High-Performance Liquid Chromatography with Electrochemical detection. Methods in Enzymology 1990; 186: 521–530
   PubMed Web of Science ®Google Scholar
• Shibutani S., Takeshita M., Grollman A.P. Insertion of specific bases during DNA synthesis past the oxidation-damaged base 8-oxodG. Nature 1991; 349: 431–434
   PubMed Web of Science ®Google Scholar
• Valentine M.R., Rodriguez H., Termini J. Mutagenesis by peroxy radical is dominated by transversions at deoxyguanosine: evidence for the lack of involvement of 8-oxodG and/or abasic site formation. Biochemistry 1998; 37: 7030–7038
   PubMed Web of Science ®Google Scholar
• Fraga C.G., Shigenaga M.K., Park J-W., Degan P., Ames B.N. Oxidative damage to DNA during aging: 8-hydroxy-2′-deoxyguanosine in rat organ DNA and urine. Proceedings of the National Academy of Sciences of the USA 1990; 87: 4533–4537
   PubMed Web of Science ®Google Scholar
• Chiang S-Y., Azizkhan J.C., Beerman T.A. A comparison of DNA-binding drugs as inhibitors of E2F1-and Sp1-DNA complexes and associated gene expression. Biochemistry 1998; 37: 3109–3115
   PubMed Web of Science ®Google Scholar
• Letovsky J., Dynan W.S. Measurement of the binding of transcription factor Sp1 to a single GC box recognition sequence. Nucleic Acids Research 1989; 17: 2639–2654
   PubMed Web of Science ®Google Scholar
• Ferber M.J., Maher L.J. Quantitating oligonucleotide affinities for duplex DNA: Footprinting VS electrophoretic Mobility Shift Assays. Analitical Biochemistry 1997; 244: 312–320
   PubMed Web of Science ®Google Scholar
• Dignam J.D., Lebowitz R.M., Roeder R.G. Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Research 1983; 11: 1475–1489
   PubMed Web of Science ®Google Scholar
• Bodepudi V., Iden C.R., Johnson F. An improved Method for the preparation of the phosphoramidites of modified 2′-deoxynucleosides: Incorporation of 8-oxo-2′desoxy-7H-guanosine into synthetic oligomers. Nucleosides Nucleotides 1991; 10: 755–761
   Web of Science ®Google Scholar
• Varshavsky A. Electrophoretic assay for DNA-Binding proteins. Methods in Enzymology 1987; 151: 551–565
   PubMedGoogle Scholar
• Larouche K., Bergeron M-J., Leclerc S., Guérin S.L. Optimization of competitor poly(dI-dC)·poly(dI-dC) levels is advised in DNA protein interaction studies involving enriched nuclear proteins. BioTechniques 1996; 20: 439–444
   PubMedGoogle Scholar
• Kriwacki R.W., Schultz S.C., Steitz T.A., Caradonna J.P. Sequence-specific recognition of DNA by zinc-finger peptides derived from the transcription factor Sp1. Proceedings of the National Academy of the Sciences of the USA 1992; 89: 9759–9763
   PubMed Web of Science ®Google Scholar
• Staschke K.A., Richardson K.K., Mabry T.E., Baxter A.J., Scheuring J.C., Huffman D.M., Smith W.C., Richardson F.C., Calacino J.M. Differencial effects of the incorporation of 1-(2-deoxy-2-fluoro-β-d-arabinofuranosyl)-5-iodouracil on the binding of transcription factors, AP-1 and TFIID, to their cognate target DNA sequences. Nucleic Acids Research 1996; 24: 4111–4116
   PubMedGoogle Scholar
• Kuwahara J., Yonezawa A., Futamura M., Sugiura Y. Binding of transcription factor Sp1 to GC box DNA revealed by footprinting analysis: Different contact of three zinc fingers and sequence recognition mode. Biochemistry 1993; 32: 5994–6001
   PubMedGoogle Scholar
• Plum G.E., Grollman A.P., Johnson F., Breslauer K.J. Influence of the oxidatively damage adduct 8-oxodeoxyguanosine on the conformation, energetics and thermodynamic stability of a DNA duplex. Biochemistry 1995; 34: 16148–16160
   PubMed Web of Science ®Google Scholar
• Nardelli J., Gibson T.J., Vesque C., Charnay P. Base sequence discrimination by zinc-finger DNA-binding domains. Nature 1991; 349: 175–178
   PubMedGoogle Scholar
• Berg J.M. Sp1 and the subfamily of zinc finger proteins with guanine-rich binding sites. Proceedings of the National Academy of the Sciences of the USA 1992; 89: 11109–11110
   PubMedGoogle Scholar
• Desjarlais J.R., Berg J.M. Toward rules relating zinc finger protein sequences and DNA binding site preferences. Proceedings of the National Academy of the Sciences of the USA 1992; 89: 7345–7349
   PubMed Web of Science ®Google Scholar
• Saegusa N., Yokono M., Matsushita K., Sugiura Y. Different contributions of three zinc fingers of transcription factor Sp1 to DNA recognition: novel binding mode of N-terminal finger 1. Nucleic Acids Symposium Series 1997; 37: 151–152
   Google Scholar
• Yokono M., Saegusa N., Matsushita K., Sugiura Y. Unique DNA binding mode of the N-terminal zinc finger of transcription factor Sp1. Biochemistry 1998; 37: 6824–6832
   PubMedGoogle Scholar