SSR and morphological traits based fingerprints and DNA barcodes for varietal identification in rice

References

• Ali AA. Role of seed and its technological innovations in Indian agricultural sector. Biosci Biotech Res Comm. 2016;9(4):621–624.
   Web of Science ®Google Scholar
• George RAT. Vegetable seed production. Rome (Italy): CABI; 2009.
   Google Scholar
• Faccioli P, Terzi V, Monetti A, et al. B-hordein STS markers for barley genotype identification: comparison with RFLPs, hordein A-PAGE and morph physiological traits. Seed Sci Technol. 1995; 23(2):4415–4427.
   Web of Science ®Google Scholar
• Mondal B, Singh SP, Joshi DC. DUS characterization of rice (Oryza sativa L.) using morphological descriptors and quality parameters. Outlook Agric. 2014;43(2):131–137.
   Web of Science ®Google Scholar
• Korir NK, Han J, Shangguan L, et al. Plant variety and cultivar identification: advances and prospects. Crit Rev Biotechnol. 2013;33(2):111–125.
   PubMed Web of Science ®Google Scholar
• Ainsworth CC, Sharp PJ. The potential role of DNA probes in plant variety identification. Plant Var Seed. 1989;2:27–34.
   Google Scholar
• Kuleung C, Baenziger PS, Dweikat I. Transferability of SSR markers among wheat, rye, and triticale. Theor Appl Genet. 2004;108(6):1147–1150.
   PubMed Web of Science ®Google Scholar
• Chakravarthi BK, Naravaneni R. SSR marker based DNA fingerprinting and diversity study in rice (Oryza sativa. L). Afr J Biotechnol. 2006;5:684–688.
   Web of Science ®Google Scholar
• Zhu YF, Hu J, Han R, et al. Fingerprinting and identification of closely related wheat (Triticum aestivum L.) cultivars using ISSR and fluorescence-labelled TP-M13-SSR markers. Aus J Crop Sci. 2012;5:846–850.,
   Google Scholar
• Zheng X, Cheng T, Yang L, et al. Genetic diversity and DNA fingerprints of three important aquatic vegetables by Est-SSR markers. Sci Rep. 2019;9(1):14074.
   PubMedGoogle Scholar
• Protection of Plant Varieties and Farmer’s Rights Authority (PPV&FRA). Specific DUS test guidelines for twelve notified crops – rice (Oryza sativa L.). Plant Variety J India. 2007;1:151–169.
   Google Scholar
• Murray MG, Thompson WF. Rapid isolation of high molecular weight plant DNA. Nucl Acids Res. 1980;8(19):4321–4325.
   PubMed Web of Science ®Google Scholar
• Kanupriya, Latha PM, Aswath C, Reddy L, et al. Cultivar identification and genetic fingerprinting of guava (Psidium guajava) using microsatellite markers. Int J Fruit Sci. 2011;11:184–196.
   Google Scholar
• Lakshmana Reddy DC, Srikanth HS, Aswath C, et al. SSR based DNA fingerprinting bar codes for eggplant varieties and hybrids. Int J Vegetable Sci. 2012;18:1–12.
   Google Scholar
• Vanisri S, Durga Rani CHV, Mohammed Jamaloddin, et al. Cultivar identification and DNA finger printing of rice varieties and their utilization in seed genetic purity assessment. Agriculture Research. 2018;
   Web of Science ®Google Scholar
• PPV & FRA, Guidelines for the conduct of test for distinctiveness, uniformity and stability on rice (Oryza sativa L.). Plant Variety J India. 2007;1(1):1–25.
   Google Scholar
• Chesnokov YV, Artemyeva AM. Evaluation of the measure of polymorphism information of genetic diversity. Sel’skokhozyaistvennaya Biol. 2015;50(5):571–578.
   Google Scholar
• Chakrabarty SK, Joshi MA, Singh Y, et al. Characterization and evaluation of variability in farmers’ varieties of rice from West Bengal. Ind J Genet Plant Breed. 2012;72:136.
   Web of Science ®Google Scholar
• Aravind K, Banumathy S, Vanniarajan C, et al. DUS characterization and genetic variability studies of rice mutants. Electron J Plan Breed. 2019;10(2):451–461.
   Google Scholar
• Manjunath GA, Elsy CR, Rajendran P, et al. DUS characterization of rice (Oryza sativa L.) landraces of wayanad. Electron J Plan Breed. 2018;9(2):617–630.
   Google Scholar
• Islam MZ, Akter N, Chakrabarty T, et al. Agro-morphological characterization and genetic diversity of similar named aromatic rice (Oryza sativa L.) landraces of Bangladesh. Bangladesh Rice J. 2019;22(1):45–56.
   Google Scholar
• Sharma S, Pokhrel A, Dhakal A, et al. Agro-morphological characterization of rice (Oryza sativa L.) landraces of lamjung and tanahun district. Nepal Ann Plant Sci. 2020;2020:1–3741.
   Google Scholar
• Singhal NC, Prakash S. The characterization and identification of wheat cultivars – an integrated approach. In: Proceedings of the Indo-British workshop on plant breeders rights. Seed certification and storage, division of seed science and technology. New Delhi: IARI; 1992. p. 140–146.
   Google Scholar
• Gour L, Koutu GK, Singh Y, et al. Characterization and grouping of indigenous rice lines based on DUS test for different qualitative differentials. Pharm Inn J. 2019;8:1162–1168.
   Google Scholar
• Parthiban KT, Kanagaraj N, Palanikumaran B, et al. Development of DUS descriptor for casuarina genetic resources. Int J Genet. 2018;10(1):333–338.
   Google Scholar
• Shrivastava A, Koutu GK, Mishra DK, et al. Characterization of JNPT lines of rice (Oryza sativa L.). Plant Arc. 2015;15:397–403.
   Google Scholar
• Sinha AK, Mallick GK, Mishra PK. Grain morphological diversity of traditional rice varieties (Oryza sativa l.), in the lateritic region of West Bengal. Int J Conserv Sci. 2015;6:419–426.
   Web of Science ®Google Scholar
• Kujur N, Sandeep B, Yogita S, et al. Assessment of variability of aromatic rice using agro-morphological characterization. Int J Curr Microbiol App Sci. 2017;6(11):1835–1846.
   Google Scholar
• Rao LS, Prasad GS, Chiranjivi M, et al. DUS characterization for farmer varieties of rice. IOSR-JAVS. 2013;4(5):35–43.
   Google Scholar
• Sarawgi AK, Rao SLV, Parikh M, et al. Assessment of variability of rice (Oryza sativa L.) germplasm using characterization. J Rice Res. 2013;6:15–28.
   PubMedGoogle Scholar
• Min H, Yuan T, Jun A. Yield potential and stability in super hybrid rice and its production strategies. J Integr Agric. 2018;16:60345–60347.
   Web of Science ®Google Scholar
• De Woody JA, Honeycutt RL, Skow LC . Microsatellite markers in white-tailed deer. J Hered. 1995;86(4):317–319.
   PubMed Web of Science ®Google Scholar
• Samal R, Roy PS, Sahoo A, et al. Morphological and molecular dissection of wild rices from Eastern India suggests distinct speciation between O. rufipogon and O. nivara populations. Sci Rep. 2018;8(1):2773.
   PubMedGoogle Scholar
• Gunasena PGSD, Wasala SK, Sumanasingha VA. Molecular characterization of accessions from a traditional rice cultivar. Trop Agric Res. 2016;27(1):103–109.
   Google Scholar
• Bhave SG. DNA fingerprinting of rice varieties using SSR markers. J Agric Res Technol. 2016;41:142–147.
   Google Scholar
• Ishaq MN, Ehirim BO, Nwanyanwu GC, et al. SSR based DNA fingerprinting of some varieties of rice released in Nigeria. Afr J Biotechnol. 2019;18(11):242–248.
   Google Scholar
• Chaithanya MN, Sailaja D, Dinesh MR, et al. Microsatellite-based DNA fingerprinting of guava (Psidium guajava) genotypes. Proc Natl Acad Sci India B. 2017;87(3):859–867.
   Google Scholar
• Diwan N, Cregan PB. Automated sizing of fluorescent-labelled simple sequence repeat (SSR) markers to assay genetic variation in soybean. Theor Appl Genet. 1997;95:723–733.
   Web of Science ®Google Scholar