Phytoremediation affects microbial development on a limestone quarry

References

• Ananyeva ND, Susyan EA, Chernova OV, Wirth S. 2008. Microbial respiration activities of soils from different climatic regions of European Russia. Eur J Soil Biol. 44:147–57. doi:10.1016/j.ejsobi.2007.05.002.
   Web of Science ®Google Scholar
• Anderson JPE, Domsch KH. 1978. A physiological method for the quantitative measurement of microbial. Soil Biol Biochem. 10:215–21. doi:10.1016/0038-0717(78)90099-8.
   Web of Science ®Google Scholar
• Anderson JPE, Domsch KH. 1989. Ratios of microbial biomass carbon to total organic carbon in arable soils. Soil Biol Biochem. 21:471–9. doi:10.1016/0038-0717(89)90117-X.
   Web of Science ®Google Scholar
• Anderson JPE, Domsch KH. 1993. The metabolic quotient for CO2 (qCO2) as a specific activity parameter to assess the effect of environmental conditions, such as pH, on the microbial biomass of forest soils. Soil Biol Biochem. 25:393–5. doi:10.1016/0038-0717(93)90140-7.
   Web of Science ®Google Scholar
• Anikwe MAN. 2000. Amelioration of a heavy clay loam soil with rice husk dust and its effect on soil physical properties and maize yield. Bioresource Technol. 74:169–73. doi:10.1016/S0960-8524(00)00007-9.
   Web of Science ®Google Scholar
• Bahn M, Rodeghiero M, Anderson-Dun M, Dore S, Gimeno C, Drösler M, Williams M, Ammann C, Berninger F, Flechard C, et al. 2008. Soil respiration in European grasslands in relation to climate and assimilate supply. Ecosystems. 11:1352–67. doi:10.1007/s10021-008-9198-0. PMID:20936099.
   PubMed Web of Science ®Google Scholar
• Brookes PC. 1995. The use of microbial parameters in monitoring soil pollution by heavy metals. Biol Fertil Soil. 19:269–79. doi:10.1007/BF00336094.
   Web of Science ®Google Scholar
• Chen S, Zou J, Hu Z, Chen H, Lu Y. 2014. Global annual soil respiration in relation to climate, soil properties and vegetation characteristics: summary of available data. Agr Forest Meteorol. 198–199:335–46. doi:10.1016/j.agrformet.2014.08.020.
   Web of Science ®Google Scholar
• Chodak M, Niklińska M. 2012. Development of microbial biomass and enzyme activities in mine soils. Pol J Environ Stud. 21:569–77.
   Web of Science ®Google Scholar
• de Souza RFV, De Giovani WF. 2005. Synthesis, spectral and electrochemical properties of Al(III) and Zn(II) complexes with flavonoids. Spectrochim Acta A. 61:1985–90. doi:10.1016/j.saa.2004.07.029.
   PubMed Web of Science ®Google Scholar
• Dick RP, Breakwell DP, Turco RF. 1996. Soil enzyme activities and biodiversity measurements as integrative microbiological indicators. In: Doran JW, Jones AJ, editors, Madison (USA): Methods for assessing soil quality SSS Special Publication, no 49. p. 247–71.
   Google Scholar
• Dilly O, Munch JC. 1998. Ratios between estimates of microbial biomass content and microbial activity in soils. Biol Fert Soils. 27:374–9. doi:10.1007/s003740050446.
   Web of Science ®Google Scholar
• DiMichele WA, Tabor NJ, Chaney DS, Nelson WJ. 2006. From wetlands to wet spots: environmental tracking and the fate of carboniferous elements in early permian tropical floras. In: Greb SF, DiMichele WA, editors. Wetlands through time. Vol. 399. Geol Soc America Spec Pap. p. 223–48.
   Google Scholar
• Dinkelaker B, Marschner H. 1992. In vivo demonstration of acid phosphatase activity in the rhizosphere of soil grown plants. Plant Soil. 144:199–205. doi:10.1007/BF00012876.
   Web of Science ®Google Scholar
• El-Hasan T, Al-Omari H, Jiries A, Al-Nasir F. 2002. Cypress tree (Cupressus sempervirens L.) bark as an indicator for heavy metal pollution in the atmosphere of Amman City, Jordan. Environ Int. 28:513–9. doi:10.1016/S0160-4120(02)00079-X. PMID:12503917.
   PubMed Web of Science ®Google Scholar
• Fereidooni M, Raiesi F, Fallah S. 2013. Ecological restoration of soil respiration, microbial biomass and enzyme activity through broiles litter application in a calcareous soil cropped with silage maize. Ecol Eng. 58:266–77. doi:10.1016/j.ecoleng.2013.06.032.
   Web of Science ®Google Scholar
• Fernandez MT, Mira ML, FlorêncioM H, Jennings KR. 2002. Iron and copper chelation by flavonoids: an electrospray mass spectrometry study. J Inorg Biochem. 92:105–11. doi:10.1016/S0162-0134(02)00511-1. PMID:12459155.
   PubMed Web of Science ®Google Scholar
• Garcia C, Hernandez T, Costa F. 1994. Microbial activity in soils under Mediterranean environmental conditions. Soil Biol Biochem. 26:1185–91. doi:10.1016/0038-0717(94)90142-2.
   Web of Science ®Google Scholar
• George TS, Gregory PJ, Wood M, Read D, Buresh RJ. 2002. Phosphatase activity and organic acids in the rhizosphere of potential agroforestry species and maize. Soil Biol Biochem. 34:1487–94. doi:10.1016/S0038-0717(02)00093-7.
   Web of Science ®Google Scholar
• Giller KE, Witter E, McGrath SP. 1998. Toxicity of heavy metals to microorganisms and microbial process in agricultural soils: a review. Soil Biol Biochem. 30:1389–414. doi:10.1016/S0038-0717(97)00270-8.
   Web of Science ®Google Scholar
• Hebrien SA, Neal JL. 1990. Soil pH and phosphatase activity. Commun Soil Sci Plan. 21:439–56. doi:10.1080/00103629009368244.
   Google Scholar
• Insam H, Domsch KH. 1988. Relationship between soil organic carbon and microbial biomass on chronosequence of reclaimed sites. Microb Ecol. 15:177–88. doi:10.1007/BF02011711. PMID:24202999.
   PubMed Web of Science ®Google Scholar
• Insam H, Haselwandter K. 1989. Metabolic quotient of the soil microflora in relation to plant succession. Oecologia. 79:174–8. doi:10.1007/BF00388474. PMID:28312851.
   PubMed Web of Science ®Google Scholar
• Iqbal J, Hu R, Feng M, Lin S, Malghani S, Ali IM. 2010. Microbial biomass, and dissolved organic carbon and nitrogen strongly affect soil respiration in different land uses: A case study at Three Gorges Reservoir Area, South China. Agr Ecosyst Environ. 137:294–307. doi:10.1016/j.agee.2010.02.015.
   Web of Science ®Google Scholar
• Izquierdo I, Caravaca F, Alguacil MM, Hernandez G, Roldan A. 2005. Use of microbiological indicators for evaluating success in soil restoration after revegetation of a mining area under subtropical conditions. Appl Soil Ecol. 30:3–10. doi:10.1016/j.apsoil.2005.02.004.
   Web of Science ®Google Scholar
• Khomik M, Arain MA, McCaughey JH. 2006. Temporal and spatial variability of soil respiration in a boreal mixed wood forest. Agric For Meteorol. 140:244–56. doi:10.1016/j.agrformet.2006.08.006.
   Web of Science ®Google Scholar
• Kruskal WH, Wallis WA. 1952. Use of ranks in one-criterion variance analysis. J Am Stat Assoc. 47:583–621. doi:10.1080/01621459.1952.10483441.
   Web of Science ®Google Scholar
• Kumpiene J, Guerri G, Landi L, Pietramellara G, Nannipieri R, Renella G. 2009. Microbial biomass, respiration and enzyme activities after in situ aided phytostabilization of Pb- and Cu-contaminated soil. Ecotox Environ Safe. 72:115–9. doi:10.1016/j.ecoenv.2008.07.002.
   PubMed Web of Science ®Google Scholar
• Lindsay WL, Norvell WA. 1978. Development of DTPA test for zinc, iron, manganese, and copper. Soil Sci Soc Am J. 42:421–8. doi:10.2136/sssaj1978.03615995004200030009x.
   Web of Science ®Google Scholar
• Lordan J, Pascual M, Fonseca F, Villar JM, Rufat J. 2013. Use of rice husk to enhance peach tree performance in soils with limiting physical properties. Soil Till Res. 129:19–22. doi:10.1016/j.still.2013.01.002.
   Web of Science ®Google Scholar
• Mench M, Lepp N, Bert V, Schwitzguébel JP, Gawronski SW, Schröder P, Vangronsveld J. 2010. Successes and limitations of phytotechnologies at field scale: outcomes, assessment and outlook from COST Action 859. J Soil Sediment. 10:1039–70. doi:10.1007/s11368-010-0190-x.
   Web of Science ®Google Scholar
• Mira L, Fernandez MT, Santos M, Rocha R, Florêncio MH, Jennings KR. 2002. Interactions of flavonoids with iron and copper ions: a mechanism for their antioxidant activity. Free Radical Res. 36(11):1199–208. doi:10.1080/1071576021000016463.
   PubMed Web of Science ®Google Scholar
• Moscatelli MC, Lagomarsino A, Marinari S, Angelis PDe, Grego S. 2005. Soil microbial indices as bioindicators of environmental changes in a poplar plantation. Ecol Indic. 5:171–9. doi:10.1016/j.ecolind.2005.03.002.
   Web of Science ®Google Scholar
• Moyano FE, Vasilyeva NA, Bouckaert L, Cook F, Craine J, Yuste JC, Don A, Epron D, Formanek P, Franzluebbers A, et al. 2012. The moisture response of soil heterotrophic respiration: interaction with soil properties. Biogeosciences. 9:1173–82. doi:10.5194/bg-9-1173-2012.
   Web of Science ®Google Scholar
• Muzzi E, Fabbri T. 2007. Revegetation of mineral clay soils: shrub and tree species compared. Land Degrad Dev. 18:441–51. doi:10.1002/ldr.786.
   Web of Science ®Google Scholar
• Nannipieri P, Grego S, Ceccanti B. 1990. Ecological significance of the biological activity in soils. In: Bollag JM, Stotzky G, editors, Soil biochemistry. Vol. 6. New York: Marcel Dekker. p. 293–355.
   Google Scholar
• Nelson DW, Sommers LE. 1982. Total carbon, organic carbon and organic matter. In: Page AL, editor. Methods of soil analysis. Vol. 2. Madison: Chemical and Microbiological Properties, Am Soc Agron. p. 539–79.
   Google Scholar
• Niemeyer JC, Lolata GB, de Carvalho GM, Da Silva EM, Sousa JP, Nogueira MA. 2012. Microbial indicators of soil health as tools for ecological risk assessment of a metal contaminated site in Brazil. Appl Soil Ecol. 59:96–105. doi:10.1016/j.apsoil.2012.03.019.
   Web of Science ®Google Scholar
• Ouahmane L, Hafidi M, Plenchette C, Kisa M, Bournezzough A, Thioulouse J, Duponnois R. 2006. Lavandula species as accompanying plants in Cupressus replanting strategies: Effect on plant growth, mycorrhizal soil infectivity and soil microbial catabolic diversity. Appl Soil Ecol. 34:190–9. doi:10.1016/j.apsoil.2006.02.002.
   Web of Science ®Google Scholar
• Özdemir Z. 2005. Pinus brutia as a biogeochemical medium to detect iron and zinc in soil analysis, chromite deposits of the area Mersin, Turkey. Chem Erde–Geochem. 65:79–88. doi:10.1016/j.chemer.2003.09.001.
   Web of Science ®Google Scholar
• Pankhurst CE, Biggs DR. 1980. Sensitivity of Rhizobium to selected isoflavonoids. Can J Microbiol. 26:542–5. doi:10.1139/m80-092. PMID:7378947.
   PubMed Web of Science ®Google Scholar
• Pinzari F, Trinchera A, Benedetti A, Sequi P. 1999. Use of biochemical indices in the Mediterranean environment: comparison among soils under different forest vegetation. J Microbiol Meth. 36:21–8. doi:10.1016/S0167-7012(99)00007-X.
   PubMed Web of Science ®Google Scholar
• Qi Y, Zhao N, Liu J, Huang J. 2016. Biochemical responses of ten ectomycorrhizal fungal isolates to manganese. Water Air Soil Poll. 227:477. doi:10.1007/s11270-016-3183-6.
   Web of Science ®Google Scholar
• Romero-Freire A, Aragón MS, Garzón FJM, Peinado FJM. 2016. Is soil basal respiration a good indicator of soil pollution? Geoderma. 263:132–9. doi:10.1016/j.geoderma.2015.09.006.
   Web of Science ®Google Scholar
• Ross DJ, Spier TW, Cowling JC, Feltham CW. 1992. Soil restoration and pasture after lignite mining: management effects on soil biochemical properties and their relationships with herbage yields. Plant Soil. 140:85–97. doi:10.1007/BF00012810.
   Web of Science ®Google Scholar
• Ross DJ, Spier JW, Tate KR, Cairns A, Meyrick KF, Pansier EA. 1982. Restoration of pasture after topsoil removal: effects on soil carbon and nitrogen mineralization, microbial biomass and enzyme activities. Soil Biol Biochem. 14:575–81. doi:10.1016/0038-0717(82)90090-6.
   Web of Science ®Google Scholar
• Rowell DL. 1994. Soil science: methods and applications. Limited, Harlow (UK): Longman Group UK.
   Google Scholar
• Saviozzi A, Levi-Minzi R, Cardelli R, Riffaldi R. 2001. A comparison of soil quality in adjacent cultivated, forest and native grassland soils. Plant Soil. 233:251–9. doi:10.1023/A:1010526209076.
   Web of Science ®Google Scholar
• Schafer WM, Nielsen GA, Dollhopf DJ, Temple K. 1979. Soil genesis, hydrological properties, root characteristics and microbial activity of 1-to 50-year-old strip mine spoils. EPA-600/7-79-100. Cincinnati (Ohio): U.S. Environmental Protection Agency. p. 233.
   Google Scholar
• Schwitzguébel JP, Kumpiene J, Comino E, Vanek T. 2009. From green to clean: a promising and sustainable approach towards environmental remediation and human health for the 21st century. Agrochimica. 53:209–37.
   Web of Science ®Google Scholar
• Shaw LJ, Morris P, Hooker JE. 2006. Perception and modification of plant flavonoid signals by rhizosphere microorganisms. Environ Microbiol. 8:1867–80. doi:10.1111/j.1462-2920.2006.01141.x. PMID:17014487.
   PubMed Web of Science ®Google Scholar
• Sinha S, Masto RE, Ram LC, Selvi VA, Srivastava NK, Tripathi RC, George J. 2009. Phizosphere soil microbial index of tree species in an coal mining ecosystem. Soil Biol Biochem. 41:1824–32. doi:10.1016/j.soilbio.2008.11.022.
   Web of Science ®Google Scholar
• Smith VR. 2003. Soil respiration and its determinants on a sub-Antarctic island. Soil Biol Biochem. 35:77–91. doi:10.1016/S0038-0717(02)00240-7.
   Web of Science ®Google Scholar
• Speir TW, Cowling JC. 1991. Phosphatse activities of pasture plants and soils: relationship with plant productivity and P fertility indices. Biol Fertil Soils. 12:189–94. doi:10.1007/BF00337200.
   Web of Science ®Google Scholar
• Stroo HF, Jencks EM. 1982. Enzyme activity and respiration in minesoils. Soil Sci Soc Am J. 46:548–53. doi:10.2136/sssaj1982.03615995004600030021x.
   Web of Science ®Google Scholar
• Tabatabai MA. 1994. Soil enzymes. In: Weaver RW, Angle JS, Bottomley PS, editors. Methods of soil analysis, Part 2. microbiological and biochemical properties. Madison (Wisconsin, USA): SSSA Book Series, no 5. Soil Sci Soc Am. p. 775–859.
   Google Scholar
• Tang X, Liu S, Zhou G, Zhang D, Zhou C. 2006. Soil-atmospheric exchange of CO2, CH4, and N2O in three subtropical forest ecosystems in southern China. Glob Change Biol. 12:546–60. doi:10.1111/j.1365-2486.2006.01109.x.
   Web of Science ®Google Scholar
• Tarafdar JC, Marschner H. 1994. Phosphatase activity in the rhizosphere and hyphosphere of VA mycorrhizal wheat supplied with inorganic and organic phosphorus. Soil Biol Biochem. 26:387–95. doi:10.1016/0038-0717(94)90288-7.
   Web of Science ®Google Scholar
• Tyler G, Balsberg-Påhlsson AM, Bengtsson G, Bååth E, Tranvik L. 1989. Heavy- metal ecology of terrestrial plants, microorganisms and invertebrates: a review. Water Air Soil Pollut. 47:189–215. doi:10.1007/BF00279327.
   Web of Science ®Google Scholar
• Vangronsveld J, Herzig R, Weyens N, Boulet J, Adriaensen K, Ruttens A, Thewys T, Vassilev A, Meers E, Nehnevajova E, et al. 2009. Phytoremediation of contaminated soils and groundwater: lessons from the field. Environ Sci Pollut Res. 16:765–94. doi:10.1007/s11356-009-0213-6.
   PubMed Web of Science ®Google Scholar
• Vesterdal L, Elberling B, Christiansen JR, Callesen I, Schmidt IK. 2012. Soil respiration and rates of soil carbon turnover differ among six common European tree species. Forest Ecol Manag. 264:185–96. doi:10.1016/j.foreco.2011.10.009.
   Web of Science ®Google Scholar
• Wardle DA, Ghani A. 1995. A critique of the microbial metabolic quotient (qCO2) as a bioindicator of disturbance and ecosystem development. Soil Biol Biochem. 27:1601–10. doi:10.1016/0038-0717(95)00093-T.
   Web of Science ®Google Scholar
• Wilson HA. 1965. The microbiology of strip-mine spoil. Bulletin. 506T. Virginia (US): West Virginia Univ Agric Exp Stn Press.
   Google Scholar
• Wink M, Witte L. 1987. Alkaloids in stem roots of Nicotiana tabacum and Spartium junceum transformed by Agrobacterium rhizogenes. Z Naturforsch C. 42:69–72.
   Google Scholar
• Yan J, Zhang D, Zhou G, Liu J. 2009. Soil respiration associated with forest succession in subtropical forests in dinghushan biosphere reserve. Soil Biol Biochem. 41:991–9. doi:10.1016/j.soilbio.2008.12.018.
   Web of Science ®Google Scholar