The complete mitochondrial genome of the clam Meretrix petechialis (Mollusca: Bivalvia: Veneridae)

References

• Akasaki T, Nikaido M, Tsuchiya K, Segawa S, Hasegawa M, Okada N. Extensive mitochondrial gene arrangements in coleoid Cephalopoda and their phylogenetic implications. Mol Phylogenet Evol 2006; 38: 648–658
   PubMed Web of Science ®Google Scholar
• Arnason E, Rand DM. Heteroplasmy of short tandem repeats in mitochondrial DNA of Atlantic cod, Gadus morhua. Genetics 1992; 132: 211–220
   PubMed Web of Science ®Google Scholar
• Benson G. Tandem repeats finder: A program to analyze DNA sequences. Nucl Acids Res 1999; 27: 573–580
   PubMed Web of Science ®Google Scholar
• Boore JL. The complete sequence of the mitochondrial genome of Nautilus macromphalus (Mollusca: Cephalopoda). BMC Genomics 2006; 7: 182
   PubMed Web of Science ®Google Scholar
• Boore JL, Brown WM. The complete DNA sequence of the mitochondrial genome of the black chiton Katharina tunicata. Genetics 1994; 138: 423–443
   PubMed Web of Science ®Google Scholar
• Boore JL, Brown WM. Mitochondrial genomes of Galathealinum, Helobdella, and Platynereis: Sequence and gene arrangement comparisons indicate that Pogonophora is not a phylum and Annelida and Arthropoda are not sister taxa. Mol Biol Evol 2000; 17: 87–106
   PubMed Web of Science ®Google Scholar
• Boore JL, Medina M, Rosenberg LA. Complete sequences of the highly rearranged molluscan mitochondrial genomes of the scaphopod Graptacme eborea and the bivalve Mytilus edulis. Mol Biol Evol 2004; 21: 1492–1503
   PubMed Web of Science ®Google Scholar
• Boyce TM, Zwick ME, Aquadro CF. Mitochondrial DNA in the bark weevils: Sizes, structure and heteroplasmy. Genetics 1989; 123: 825–836
   PubMed Web of Science ®Google Scholar
• Breton S, Burger G, Stewart DT, Blier PU. Comparative analysis of gender-associated complete mitochondrial genomes in marine mussels (Mytilus spp.). Genetics 2006; 172: 1107–1119
   PubMed Web of Science ®Google Scholar
• Bridge D, Cunningham CW, Schierwater B, DeSalle R, Buss LW. Class-level relationships in the phylum Cnidaria: Evidence from mitochondrial genome structure. Proc Natl Acad Sci USA 1992; 89: 8750–8753
   PubMed Web of Science ®Google Scholar
• Canapa A, Marota I, Rollo F, Olmo E. Phylogenetic analysis of Veneridae (Bivalvia): Comparison of molecular and palaeontological data. J Mol Evol 1996; 43: 517–522
   PubMed Web of Science ®Google Scholar
• Canapa A, Schiaparelli S, Marota I, Barucca M. Molecular data from the 16S rRNA gene for the phylogeny of Veneridae (Mollusca: Bivalvia). Mar Biol 2003; 142: 1125–1130
   Web of Science ®Google Scholar
• Cheng S, Chang SY, Gravitt P, Respress R, Long PCR. Nature 1994; 369: 684–685
   PubMed Web of Science ®Google Scholar
• DeJong RJ, Emery AM, Adema CM. The mitochondrial genome of Biomphalaria glabrata (Gastropoda: Basommatophora), intermediate host of Schistosoma mansoni. J Parasitol 2004; 90: 991–997
   PubMed Web of Science ®Google Scholar
• Dreyer H, Steiner G. The complete sequences and gene organisation of the mitochondrial genomes of the heterodont bivalves Acanthocardia tuberculata and Hiatella arctica – and the first record for a putative Atpase subunit 8 gene in marine bivalves. Frontiers Zool 2006; 3: 13
   PubMedGoogle Scholar
• Ewing B, Green P. Basecalling of automated sequencer traces using phred. II. Error probabilities. Genome Res 1998; 8: 186–194
   PubMed Web of Science ®Google Scholar
• Ewing B, Hillier L, Wendl M, Green P. Basecalling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 1998; 8: 175–185
   PubMed Web of Science ®Google Scholar
• Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mar Biol Biotechnol 1994; 3: 294–299
   PubMedGoogle Scholar
• Gordon D, Abajian C, Green P. Consed: A graphical tool for sequence finishing. Genome Res 1998; 8: 195–202
   PubMed Web of Science ®Google Scholar
• Jacobs HT, Elliott DJ, Math VB, Farquharson A. Nucleotide sequence and gene organization of sea urchin mitochondrial DNA. J Mol Biol 1988; 202: 185–217
   PubMed Web of Science ®Google Scholar
• Kurabayashi A, Ueshima R. Complete sequence of the mitochondrial DNA of the primitive opisthobranch gastropod Pupa strigosa: Systematic implication of the genome organization. Mol Biol Evol 2000; 17: 266–277
   PubMed Web of Science ®Google Scholar
• Liu HP, Mitton JB, Wu SK. Paternal mitochondrial DNA differentiation far exceeds maternal mitochondrial DNA and allozyme differentiation in the freshwater mussels, Anodonta grandis grandis. Evolution 1996; 50: 952–957
   Google Scholar
• Lowe TM, Eddy SR. TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 1997; 25: 955–964
   PubMed Web of Science ®Google Scholar
• Lunt DH, Whipple LE, Hyman BC. Mitochondrial DNA variable number tandem repeats (VNTRs): Utility and problems in molecular ecology. Mol Ecol 1998; 7: 1441–1455
   PubMed Web of Science ®Google Scholar
• Maynard BT, Kerr LJ, Mckiernan JM, Jansen ES, Hanna PJ. Mitochondrial DNA sequence and gene organization in the Australian blacklip abalone Haliotis rubra (leach). Mar Biotechnol 2005; 7: 645–658
   PubMed Web of Science ®Google Scholar
• Mikkelsen PM, Bieler R, Kappner I, Rawlings TA. Phylogeny of Veneroidea (Mollusca: Bivalvia) based on morphology and molecules. Zool J Linnean Soc 2006; 148: 439–521
   Web of Science ®Google Scholar
• Milbury CA, Gaffney PM. Complete mitochondrial DNA sequence of the eastern oyster Crassostrea virginica. Mar Biotechnol 2005; 7: 697–712
   PubMed Web of Science ®Google Scholar
• Mizi A, Zouros E, Moschonas N, Rodakis GC. The complete maternal and paternal mitochondrial genomes of the Mediterranean mussel Mytilus galloprovincialis: Implications for the doubly uniparental inheritances mode of mtDNA. Mol Biol Evol 2005; 22: 952–967
   PubMed Web of Science ®Google Scholar
• Passamonti M, Scalim V. Gender-associated mitochondrial DNA heteroplasmy in the venerid clam Tapes philippinarum (Mollusca Bivalvia). Curr Genet 2001; 39: 117–124
   PubMed Web of Science ®Google Scholar
• Rozas J, Sánchez-DelBarrio JC, Messeguer X, Rozas R. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 2003; 19: 2496–2497
   PubMed Web of Science ®Google Scholar
• Serb JM, Lydeard C. Complete mtDNA sequence of the North American freshwater mussel, Lampsilis ornata (Unionidae): An examination of the evolution and phylogenetic utility of mitochondrial genome organization in Bivalvia (Mollusca). Mol Biol Evol 2003; 20: 1854–1866
   PubMed Web of Science ®Google Scholar
• Shadel GS, Clayton DA. Mitochondrial DNA maintenance in vertebrates. Annu Rev Biochem 1997; 66: 409–435
   PubMed Web of Science ®Google Scholar
• Smith DR, Snyder M. Complete mitochondrial DNA sequence of the scallop Placopecten magellanicus: Evidence of transposition leading to an uncharacteristically large mitochondrial genome. J Mol Evol 2007; 65: 380–391
   Google Scholar
• Tomita K, Yokobori S, Oshima T, Ueda T, Watanabe K. The cephalopod Loligo bleekeri mitochondrial genome: Multiplied noncoding regions and transposition of tRNA genes. J Mol Evol 2002; 54: 486–500
   PubMed Web of Science ®Google Scholar
• Wilkinson GS, Chapman AM. Length and sequence variation in evening bat D-loop mtDNA. Genetics 1991; 128: 607–617
   PubMed Web of Science ®Google Scholar
• Wolstenholme DR. Animal mitochondrial DNA: Structure and evolution. Int Rev Cytol 1992; 141: 73–216
   Google Scholar
• Wyman SK, Jansen RK, Boore JL. Automatic annotation of organellar genomes with DOGMA. Bioinformatics 2004; 20: 3252–3255
   PubMed Web of Science ®Google Scholar
• Yamazaki N, Ueshima R, Terrett JA, Yokobori SI, Kaifu M, Segawa R, Kobayashi T, Numachi KI, Ueda T, Nishikawa K, Watanabe K, Thomas RH. Evolution of pulmonate gastropod mitochondrial genomes: Comparisons of gene organizations of Euhadra, Cepaea and Albinaria and implications of unusual tRNA secondary structures. Genetics 1997; 145: 749–758
   PubMed Web of Science ®Google Scholar
• Yokobori S, Fukuda N, Nakamura M, Aoyama T, Oshima T. Long-term conservation of six duplicated structural genes in cephalopod mitochondrial genomes. Mol Biol Evol 2004; 21: 2034–2046
   PubMed Web of Science ®Google Scholar
• Zouros E, Ball AO, Saavedra C, Freeman KR. An unusual type of mitochondrial DNA inheritance in the blue mussel Mytilus. Proc Natl Acad Sci USA 1994; 91: 7463–7467
   PubMed Web of Science ®Google Scholar