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Mitochondrial DNA Part B
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Volume 2, 2017 - Issue 1
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Mitogenome Announcement

Complete mitochondrial genome sequence of the freshwater diatom Asterionella formosa

Adrien VillainInformation Génomique & Structurale UMR 7256, Aix Marseille Univ CNRS, IMM FR 3479, Marseille, France; View further author information
,
Mila KojadinovicBIP UMR 7281, IMM FR 3479, Aix Marseille Univ CNRS, Marseille Cedex 20, France; View further author information
,
Carine PuppoBIP UMR 7281, IMM FR 3479, Aix Marseille Univ CNRS, Marseille Cedex 20, France; View further author information
,
Laura PriorettiBIP UMR 7281, IMM FR 3479, Aix Marseille Univ CNRS, Marseille Cedex 20, France; View further author information
,
Pierre HubertLaboratoire d'Ingénierie des Systèmes Macromoléculaires, Aix Marseille Univ CNRS UMR 7255 (IMM FR 3479), Marseille, France; View further author information
,
Yizhi ZhangBIP UMR 7281, IMM FR 3479, Aix Marseille Univ CNRS, Marseille Cedex 20, France; View further author information
,
Gérald GrégoriMediterranean Institute of Oceanography, Aix Marseille Univ, Univ Toulon, CNRS, Marseille, France; View further author information
,
Alain RouletGeT-PlaGe, Genotoul, INRA, Castanet-Tolosan, France; ;UAR1209, INRA, Castanet-Tolosan, France; View further author information
,
Céline RoquesGeT-PlaGe, Genotoul, INRA, Castanet-Tolosan, France; ;UAR1209, INRA, Castanet-Tolosan, France; View further author information
,
Jean-Michel ClaverieInformation Génomique & Structurale UMR 7256, Aix Marseille Univ CNRS, IMM FR 3479, Marseille, France; ;Assistance Publique des Hôpitaux de Marseille (APHM), Marseille, FranceView further author information
,
Brigitte GonteroBIP UMR 7281, IMM FR 3479, Aix Marseille Univ CNRS, Marseille Cedex 20, France; Correspondence[email protected]
View further author information
&
Guillaume BlancInformation Génomique & Structurale UMR 7256, Aix Marseille Univ CNRS, IMM FR 3479, Marseille, France; Correspondence[email protected]
View further author information
 show all
Pages 97-98 | Received 23 Dec 2016, Accepted 18 Jan 2017, Published online: 16 Feb 2017

References

  • Altschul S. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389–3402.
  • An SM, Kim SY, Noh JH, Yang EC. 2016a. Complete mitochondrial genome of Skeletonema marinoi (Mediophyceae, Bacillariophyta), a clonal chain forming diatom in the west coast of Korea. Mitochondrial DNA Part B. 1:549–550.
  • An SM, Noh JH, Choi DH, Lee JH, Yang EC. 2016b. Repeat region absent in mitochondrial genome of tube-dwelling diatom Berkeleya fennica (Naviculales, Bacillariophyceae). Mitochondrial DNA Part A. 27:2137–2138.
  • Benson G. 1999. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27:573–580.
  • Chin C-S, Alexander DH, Marks P, Klammer AA, Drake J, Heiner C, Clum A, Copeland A, Huddleston J, Eichler EE, et al. 2013. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat Methods. 10:563–569.
  • Darriba D, Taboada GL, Doallo R, Posada D. 2011. ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics. 27:1164–1165.
  • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792–1797.
  • Guindon S, Delsuc F, Dufayard J-F, Gascuel O. 2009. Estimating maximum likelihood phylogenies with PhyML, p. 113–137. In: Posada, D, ed. Bioinformatics for DNA sequence analysis. Totowa (NJ): Humana Press.
  • Hauth AM. 2005. The Rhodomonas salina mitochondrial genome: bacteria-like operons, compact gene arrangement and complex repeat region. Nucleic Acids Res. 33:4433–4442.
  • Kim E, Lane CE, Curtis BA, Kozera C, Bowman S, Archibald JM. 2008. Complete sequence and analysis of the mitochondrial genome of Hemiselmis andersenii CCMP644 (Cryptophyceae). BMC Genomics. 9:215
  • Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25:955–964.
  • Lund JWG. 1949. Studies on Asterionella: I. The origin and nature of the cells producing seasonal maxima. J Ecol. 37:389.
  • Okonechnikov K, Golosova O, Fursov M, the UGENE team. 2012. Unipro UGENE: a unified bioinformatics toolkit. Bioinformatics. 28:1166–1167.
  • Ravin NV, Galachyants YP, Mardanov AV, Beletsky AV, Petrova DP, Sherbakova TA, Zakharova YR, Likhoshway YV, Skryabin KG, Grachev MA. 2010. Complete sequence of the mitochondrial genome of a diatom alga Synedra acus and comparative analysis of diatom mitochondrial genomes. Curr Genet. 56:215–223.
  • Secq M-PO-L, Green BR. 2011. Complex repeat structures and novel features in the mitochondrial genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana. Gene. 476:20–26.
  • Stöver BC, Müller KF. 2010. TreeGraph 2: combining and visualizing evidence from different phylogenetic analyses. BMC Bioinformatics. 11:7.

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