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ORIGINAL RESEARCH

Investigating the Cell Origin and Liver Metastasis Factors of Colorectal Cancer by Single-Cell Transcriptome Analysis

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Pages 345-358 | Received 18 Jan 2024, Accepted 06 Apr 2024, Published online: 16 Apr 2024

References

  • Moullet M, Funston G, Mounce LT, et al. Pre-diagnostic clinical features and blood tests in patients with colorectal cancer: a retrospective linked-data study. Br J General Practice. 2022;72(721):e556–e63. doi:10.3399/bjgp.2021.0563
  • Yang J, Peng JY, Chen W. Synchronous colorectal cancers: a review of clinical features, diagnosis, treatment, and prognosis. Digestive Surgery. 2011;28(5–6):379–385. doi:10.1159/000334073
  • Cervantes A, Adam R, Roselló S, et al. Metastatic colorectal cancer: ESMO Clinical Practice Guideline for diagnosis, treatment and follow-up. Ann Oncol. 2023;34(1):10–32. doi:10.1016/j.annonc.2022.10.003
  • Chen K, Collins G, Wang H, Toh JWT. Pathological Features and Prognostication in Colorectal Cancer. Current Oncol. 2021;28(6):5356–5383. doi:10.3390/curroncol28060447
  • Zhang C, Yin S, Tan Y, et al. Patient Selection for Adjuvant Chemotherapy in High-Risk Stage II Colon Cancer: a Systematic Review and Meta-Analysis. Am j Clin Oncol. 2020;43(4):279–287. doi:10.1097/coc.0000000000000663
  • Schneider NI, Langner C. Prognostic stratification of colorectal cancer patients: current perspectives. Cancer Manage Res. 2014;6:291–300. doi:10.2147/cmar.S38827
  • Akgül Ö, Çetinkaya E, Ersöz Ş, Tez M. Role of surgery in colorectal cancer liver metastases. World J Gastroenterol. 2014;20(20):6113–6122. doi:10.3748/wjg.v20.i20.6113
  • Engstrand J, Nilsson H, Strömberg C, Jonas E, Freedman J. Colorectal cancer liver metastases - a population-based study on incidence, management and survival. BMC Cancer. 2018;18(1):78. doi:10.1186/s12885-017-3925-x
  • Dendy MS, Ludwig JM, Kim HS. Predictors and prognosticators for survival with Yttrium-90 radioembolization therapy for unresectable colorectal cancer liver metastasis. Oncotarget. 2017;8(23):37912–37922. doi:10.18632/oncotarget.16007
  • Zhu D, Ren L, Xu J. Interpretation of guidelines for the diagnosis and comprehensive treatment of colorectal cancer liver metastases in China(v2013). Chine j Gastrointestinal Surgery. 2014;17(6):525–529.
  • Zhang Y, Song J, Zhao Z, et al. Single-cell transcriptome analysis reveals tumor immune microenvironment heterogenicity and granulocytes enrichment in colorectal cancer liver metastases. Cancer Lett. 2020;470:84–94. doi:10.1016/j.canlet.2019.10.016
  • Zheng X, Ma Y, Bai Y, et al. Identification and validation of immunotherapy for four novel clusters of colorectal cancer based on the tumor microenvironment. Front Immunol. 2022;13:984480. doi:10.3389/fimmu.2022.984480
  • Hänzelmann S, Castelo R, Guinney J. GSVA: gene set variation analysis for microarray and RNA-seq data. BMC Bioinf. 2013;14:7. doi:10.1186/1471-2105-14-7
  • Durante MA, Rodriguez DA, Kurtenbach S, et al. Single-cell analysis reveals new evolutionary complexity in uveal melanoma. Nat Commun. 2020;11(1):496. doi:10.1038/s41467-019-14256-1
  • Suphavilai C, Chia S, Sharma A, et al. Predicting heterogeneity in clone-specific therapeutic vulnerabilities using single-cell transcriptomic signatures. Genome med. 2021;13(1):189. doi:10.1186/s13073-021-01000-y
  • Kurtenbach S, Cruz AM, Rodriguez DA, Durante MA, Harbour JW. Uphyloplot2: visualizing phylogenetic trees from single-cell RNA-seq data. BMC Genomics. 2021;22(1):419. doi:10.1186/s12864-021-07739-3
  • Qiu X, Mao Q, Tang Y, et al. Reversed graph embedding resolves complex single-cell trajectories. Nature Methods. 2017;14(10):979–982. doi:10.1038/nmeth.4402
  • Wang Z, Wang Y, Yang T, et al. Machine learning revealed stemness features and a novel stemness-based classification with appealing implications in discriminating the prognosis, immunotherapy and temozolomide responses of 906 glioblastoma patients. Brief Bioinform. 2021;22(5):32. doi:10.1093/bib/bbab032
  • Jafarnejad SM, Wani AA, Martinka M, Li G. Prognostic significance of Sox4 expression in human cutaneous melanoma and its role in cell migration and invasion. Am J Pathol. 2010;177(6):2741–2752. doi:10.2353/ajpath.2010.100377
  • Liu Y, Zeng S, Jiang X, Lai D, Su Z. SOX4 induces tumor invasion by targeting EMT-related pathway in prostate cancer. Tumour Biol. 2017;39(5):1010428317694539. doi:10.1177/1010428317694539
  • Ruan H, Yang H, Wei H, et al. Overexpression of SOX4 promotes cell migration and invasion of renal cell carcinoma by inducing epithelial-mesenchymal transition. Int j Oncol. 2017;51(1):336–346. doi:10.3892/ijo.2017.4010
  • Patel SG, May FP, Anderson JC, et al. Updates on Age to Start and Stop Colorectal Cancer Screening: recommendations From the U.S. Multi-Society Task Force on Colorectal Cancer. Gastroenterology. 2022;162(1):285–299. doi:10.1053/j.gastro.2021.10.007
  • Masdor NA, Mohammed Nawi A, Hod R, Wong Z, Makpol S, Chin SF. The Link between Food Environment and Colorectal Cancer: a Systematic Review. Nutrients. 2022;14(19). doi:10.3390/nu14193954
  • Liu Y, Zhang Q, Xing B, et al. Immune phenotypic linkage between colorectal cancer and liver metastasis. Cancer Cell. 2022;40(4):424–37.e5. doi:10.1016/j.ccell.2022.02.013
  • Zhang Q, Liu S, Liu Y, et al. Liver Metastasis Modulate Responses of Suppressive Macrophages and Exhausted T Cells to Immunotherapy Revealed by Single Cell Sequencing. Adv Genet. 2022;3(4):2200002. doi:10.1002/ggn2.202200002
  • Zhao S, Mi Y, Guan B, et al. Tumor-derived exosomal miR-934 induces macrophage M2 polarization to promote liver metastasis of colorectal cancer. J Hematol Oncol. 2020;13(1):156. doi:10.1186/s13045-020-00991-2
  • Zhou H, Zhu L, Song J, et al. Liquid biopsy at the frontier of detection, prognosis and progression monitoring in colorectal cancer. Mol Cancer. 2022;21(1):86. doi:10.1186/s12943-022-01556-2
  • Li W, Chang J, Wang S, et al. miRNA-99b-5p suppresses liver metastasis of colorectal cancer by down-regulating mTOR. Oncotarget. 2015;6(27):24448–24462. doi:10.18632/oncotarget.4423
  • Gulhati P, Bowen KA, Liu J, et al. mTORC1 and mTORC2 regulate EMT, motility, and metastasis of colorectal cancer via RhoA and Rac1 signaling pathways. Cancer Res. 2011;71(9):3246–3256. doi:10.1158/0008-5472.can-10-4058
  • Nash GM, Gimbel M, Shia J, et al. KRAS mutation correlates with accelerated metastatic progression in patients with colorectal liver metastases. Ann Surg Oncol. 2010;17(2):572–578. doi:10.1245/s10434-009-0605-3
  • Zhu Y, Li X. Advances of Wnt Signalling Pathway in Colorectal Cancer. Cells. 2023;12(3). doi:10.3390/cells12030447published
  • Moreno CS. SOX4: the unappreciated oncogene. Semin Cancer Biol. 2020;67(Pt 1):57–64. doi:10.1016/j.semcancer.2019.08.027
  • Bagati A, Kumar S, Jiang P, et al. Integrin αvβ6-TGFβ-SOX4 Pathway Drives Immune Evasion in Triple-Negative Breast Cancer. Cancer Cell. 2021;39(1):54–67.e9. doi:10.1016/j.ccell.2020.12.001
  • Qiu Z, Khairallah C, Chu TH, et al. Retinoic acid signaling during priming licenses intestinal CD103+ CD8 TRM cell differentiation. J Exp Med. 2023;220(5):923. doi:10.1084/jem.20210923
  • Zhang J, Xiao C, Feng Z, et al. SOX4 promotes the growth and metastasis of breast cancer. Cancer Cell Int. 2020;20:468. doi:10.1186/s12935-020-01568-2
  • Bai CJ, Gao T, Liu JY, Li S, Wang XY, Fan ZF. SNHG9/miR-214-5p/SOX4 feedback loop regulates osteosarcoma progression. Neoplasma. 2022;69(5):1175–1184. doi:10.4149/neo_2022_220228N218
  • Miyazaki M, Otomo R, Matsushima-Hibiya Y, et al. The p53 activator overcomes resistance to ALK inhibitors by regulating p53-target selectivity in ALK-driven neuroblastomas. Cell Death Discov. 2018;4:56. doi:10.1038/s41420-018-0059-0