Influence of evolutionary forces and demographic processes on the genetic structure of three Croatian populations: A maternal perspective

References

• Achilli A, Rengo C, Magri C, Battaglia V, Olivieri A, Scozzari R, Cruciani F, Zeviani M, Briem E, Carelli V, Moral P, Dugoujon JM, Roostalu U, Loogväli EL, Kivisild T, Bandelt H-J, Richards M, Villems R, Santachiara-Benerecetti AS, Semino O, Torroni A. 2004. The molecular dissection of mtDNA haplogroup H confirms that the Franco-Cantabrian glacial refuge was a major source for the European gene pool. Am J Hum Genet. 75:910–918.
   PubMed Web of Science ®Google Scholar
• Allard MW, Miller K, Wilson M, Monson K, Budowle B. 2002. Characterization of the Caucasian haplogroups present in the SWGDAM forensic mtDNA dataset for 1771 human control region sequences Scientific Working Group on DNA Analysis Methods. J Forensic Sci. 47:1215–1223.
   PubMedGoogle Scholar
• Álvarez-Iglesias V, Mosquera-Miguel A, Cerezo M, Quintans B, Zarrabeitia MT, Cusco I, Lareu MV, Garcia O, Perez-Jurado L, Carracedo A, Salas A. 2009. New Population and Phylogenetic features of the internal variation within mitochondrial DNA macro-haplogroup R0. PLoS ONE. 4:5112.
   PubMed Web of Science ®Google Scholar
• Andrews RM, Kubacka I, Chinnery PF, Lightowlers RN, Turnbull DM, Howell N.. 1999. Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nat Genet. 23:147.
   PubMed Web of Science ®Google Scholar
• Behar DM, Metspalu E, Kivisild T, Achilli A, Hadid Y, Tzur S, Pereira L, Amorim A, Quintana-Murci L, Majamaa K, Herrnstadt C, Howell N, Balanovsky O, Kutuev I, Pshenichnov A, Gurwitz D, Bonne-Tamir B, Torroni A, Villems R. 2006. Skorecki K The matrilineal ancestry of Ashkenazi Jewry: portrait of a recent founder event. Am J Hum Genet. 78:487–497.
   PubMed Web of Science ®Google Scholar
• Bertranpetit J, Sala J, Calafell F, Underhill PA, Moral P, Comas D. 1995. Human mitochondrial DNA variation and the origin of Basques. Ann Hum Genet. 59:63–81.
   PubMed Web of Science ®Google Scholar
• Brandstätter A, Niederstätter H, Pavlic M, Grubwieser P, Parson W. 2007. Generating population data for the EMPOP database-An overview of the mtDNA sequencing and data evaluation processes considering 273 Austrian control region sequences as example. 2007. Forensic Sci Int. 166:164–175.
   PubMed Web of Science ®Google Scholar
• Brandstätter A, Zimmermann B, Wagner J, Göbel T, Röck AW, Salas A, Carracedo A, Parson W. 2008. Timing and deciphering mitochondrial DNA macro-haplogroup R0 variability in Central Europe and Middle East. BMC Evol Biol. 8:191.
   PubMed Web of Science ®Google Scholar
• Clarke KR, Gorley RN. PRIMER v6: user manual/tutorial. Plymouth, United Kingdom: PRIMER-E. 2006.
   Google Scholar
• Cvjetan S, Tolk HV, Barać Lauc L, Čolak I, Đordević D, Efremovska L, Janićijević B, Kvesić A, Martinović Klarić I, Metspalu E, Peričić M, Parik J, Popović D, Šijački A, Terzić R, Villems R, Rudan P. 2004. Frequencies of mtDNA haplogroups in Southeastern Europe - Croatians, Bosnians and Herzegovinians, Serbians, Macedonians and Macedonian Romani. Coll Antropol. 28:193–198.
   PubMedGoogle Scholar
• Deka R, Smolej Narančić N, Xi H, Turek S, Čubrilo-Turek M, Vrhovski-Hebrang B, Janićijević B, Tomljenović A, Szirovicza L, Jin L, Chakraborty R, Rudan P. 2008. Metabolic Syndrome in an island population of the Eastern Adriatic Coast of Croatia. Coll Antropol. 32:85–91.
   PubMedGoogle Scholar
• Ennafaa H, Cabrera VM, Abu-Amero KK, Gonzalez AM, Amor MB, Bouhaha R, Dzimiri N, Elgaaied AB, Larruga JM, Mitochondrial DNA, haplogroup H. 2009. structure in North Africa. BMC Genetics. 10:8–17.
   PubMed Web of Science ®Google Scholar
• Excoffier L, Lischer HEL. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecol Res. 10:564–567.
   PubMed Web of Science ®Google Scholar
• Forenbaher S. 1999. The earliest islanders of the Eastern Adriatic. Coll Antropol. 23:521–530.
   PubMed Web of Science ®Google Scholar
• Forenbaher S, (editor). 2009. A connecting sea: maritime interaction in adriatic prehistory. Oxford: Archaeopress.
   Google Scholar
• Fraumene C, Petretto E, Angius A, Pirastu M. 2003. Striking differentiation of sub-populations within a genetically homogenous isolate (Ogliastra) in Sardinia as revealed by mtDNA analysis. Hum Genet. 114:1–10.
   PubMedGoogle Scholar
• Garcia O, Fregel R, Larruga JM, Alvarez V, Yurrebaso I, Cabrera VM, Gonzalez AM. 2011. Using mitochondrial DNA to test the hypothesis of a European post-glacial recolonization from the Franco-Cantabrian refuge. Heredity. 106:37–45.
   PubMed Web of Science ®Google Scholar
• Gensini GF, Yacoub MH, Conti AA. 2004. The concept of quarantine in history: from plague to SARS. J Infection. 49:257–261.
   PubMed Web of Science ®Google Scholar
• Gjurašić M. 2010. Meleda disease (Mal de Meleda): historical shifts in perception [in Croatian]. Acta Med Hist Adriat. 8:17–58.
   PubMedGoogle Scholar
• Hasegawa M, Di Rienzo A, Kocher TD, Wilson AC. 1993. Toward a more accurate time scale for the human mitochondrial DNA tree. J Mol Evol. 37:347–354.
   PubMed Web of Science ®Google Scholar
• Irwin J, Egyed B, Saunier J, Szamosi G, O'Callaghan J, Padar Z, Parsons TJ. 2007. Hungarian mtDNA population databases from Budapest and the Baranya county Roma. Int J Legl Med. 121:377–383.
   PubMedGoogle Scholar
• Jeran N. 2010. Genetic diversity and structure of eastern Adriatic islanders revealed by mitochondrial DNA analysis. PhD Thesis. Zagreb: Institute for Anthropological Research.
   Google Scholar
• Jeran N, Havaš Auguštin D, Grahovac B, Kapović M, Metspalu E, Villems R, Rudan P. 2009. Mitochondrial DNA heritage of Cres islanders - example of Croatian genetic outliers. Coll Antropol. 33:1323–1328.
   PubMedGoogle Scholar
• Kolčić I, Vorko-Jović A, Salzer B, Smoljanović M, Kern J, Vuletić S. 2006. Metabolic syndrome in a metapopulation of Croatian island isolates. Croat Med J. 47:585–592.
   PubMedGoogle Scholar
• Loogvali K, Roostalu R, Malyarchuk BA, Derenko MV, Kivisild T, Metspalu E, Tambets K, Reidla M, Tolk HV, Parik J, Pennarun E, Laos S, Lunkina A, Golubenko M, Barac L, Pericic M, Balanovsky Gusar V, Khusnutdinova EK, Stepanov V, Puzyrev V, Rudan P, Balanovska EV, Grechanina E, Richard C, Moisan JP, Chaventré A, Anagnou NP, Pappa KI, Michalodimitrakis EN, Claustres M, Gölge M, Mikerezi I, Usanga E, Villems R. 2004. Disuniting uniformity: a pied cladistic canvas of mtDNA haplogroup H in Eurasia. Mol Biol Evol. 21:2012–2021.
   PubMed Web of Science ®Google Scholar
• Macaulay V, Richards M, Hickey E, Vega E, Cruciani F, Guida V, Scozzari R, Bonne-Tamir B, Sykes B, Torroni A. 1999. The emerging tree of west Eurasian mtDNAs: a synthesis of control-region sequences and RFLPs. Am J Hum Genet. 64:232–249.
   PubMed Web of Science ®Google Scholar
• Malyarchuk B, Grzybowski T, Derenko M, Perkova M, Vanecek T, Lazur J, Gomolcak P, Tsybovsky I. Mitochondrial DNA phylogeny in Eastern and Western Slavs. Mol Biol Evol. 2008a; 25:1651–1658.
   PubMed Web of Science ®Google Scholar
• Malyarchuk BA, Perkova MA, Derenko MV, Vanecek T, Lazur J, Gomolcak P. Mitochondrial DNA variability in Slovaks, with application to the Roma origin. Ann Hum Genet. 2008b; 72:228–240.
   PubMed Web of Science ®Google Scholar
• Malyarchuk BA, Vanecek T, Perkova MA, Derenko MV, Sip M, Mitochondrial DNA. 2006. variability in the Czech population, with application to the ethnic history of Slavs. Hum Biol. 78:681–696.
   PubMed Web of Science ®Google Scholar
• Maričević A. 1995. Incidence of congenital hip dislocation in Lastovo 1885-1993 [in Croatian]. Lijec Vjesn. 117:126–129.
   PubMedGoogle Scholar
• Miller SA, Dykes DD, Polesky HF. 1988. A simple salting-out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res. 16:1215.
   PubMed Web of Science ®Google Scholar
• Nejašmić I. 1991. Depopulation in Croatia: causes, status, perspectives [in Croatian]. Zagreb, Globus: Institute for Migration and Ethnic Studies.
   Google Scholar
• Ottoni C, Primativo G, Kashani BH, Achilli A, Martinez-Labarga C, Biondi G, Torroni A, Rickards O. 2010. Mitochondrial Haplogroup H1 in North Africa: an early holocene arrival from Iberia. PLoS ONE. 5:e13378.
   PubMed Web of Science ®Google Scholar
• Peltonen L, Palotie A, Lange K. 2000. Use of population isolates for mapping complex traits. Nat Genet. 1:182–190.
   Google Scholar
• Peričić M, Barać Lauc L, Martinović Klarić I, Janićijević B, Rudan P. 2005. Review of Croatian genetic heritage as revealed by mitochondrial DNA and Y chromosomal lineages. Croat Med J. 46:502–513.
   PubMed Web of Science ®Google Scholar
• Richards M, Macaulay VA, Bandelt HJ, Sykes BC. 1998. Phylogeography of mitochondrial DNA in Western Europe. Ann Hum Genet. 62:241–260.
   PubMed Web of Science ®Google Scholar
• Richards M, Macaulay V, Hickey E, Vega E, Sykes B, Guida V, Rengo C, Sellitto D, Cruciani F, Kivisild T, Villems R, Thomas M, Rychkov S, Rychkov O, Rychkov Y, Gölge M, Dimitrov D, Hill E, Bradley D, Romano V, Calı F, Vona G, Demaine A, Papiha S, Triantaphyllidis C, Stefanescu G, Hatina J, Belledi M, Di Rienzo A, Novelletto A, Oppenheim A, Nørby S, Al-Zaheri N, Santachiara-Benerecetti S, Scozzari R, Torroni A, Bandelt HJ. 2000. Tracing European founder lineages in the Near Eastern mtDNA pool. Am J Hum Genet. 67:1251–1276.
   PubMed Web of Science ®Google Scholar
• Roostalu U, Kutuev I, Loogväli EL, Metspalu E, Tambets K, Reidla M, Khusnutdinova EK, Usanga E, Kivisild T, Villems R. 2007. Origin and expansion of haplogroup H, the dominant human mitochondrial DNA lineage in West Eurasia: the Near Eastern and Caucasian perspective. Mol Biol Evol. 24:436–448.
   PubMed Web of Science ®Google Scholar
• Rootsi S, Magri C, Kivisild T, Benuzzi G, Help H, Bermisheva M, Kutuev I, Barać L, Peričić M, Balanovsky O, Pshenichnov A, Dion D, Grobei M, Zhivotovsky LA, Battaglia V, Achilli A, Al-Zahery N, Parik J, King R, Cinnioğlu C, Khusnutdinova E, Rudan P, Balanovska E, Scheffrahn W, Simonescu M, Brehm A, Goncalves R, Rosa A, Moisan JP, Chaventre A, Ferak V, Füredi S, Oefner PJ, Shen P, Beckman L, Mikerezi I, Terzić R, Primorac D, Cambon-Thomsen A, Krumina A, Torroni A, Underhill PA, Santachiara-Benerecetti AS, Villems R, Semino O. 2004. Phylogeography of Y chromosome haplogroup I reveals distinct domain of prehistoric gene flow in Europe. Ann J Hum Genet. 75:128–137.
   PubMed Web of Science ®Google Scholar
• Rudan I. 2001. Ancestral kinship and cancer in Lastovo Island Croatia. Hum Biol. 73:871–884.
   PubMedGoogle Scholar
• Rudan I, Biloglav Z, Vorko-Jović A, Kujundžić-Tiljak M, Stevanović R, Ropac D, Puntarić D, Čučević B, Salzer B, Campbell H. 2006. Effects of inbreeding, endogamy, genetic admixture, and outbreeding on human health: a “1001 Dalmatians” study. Croat Med J. 47:601–610.
   PubMedGoogle Scholar
• Rudan I, Campbell H, Rudan P. 1999. Genetic epidemiological studies of eastern Adriatic island isolates Croatia: objectives and strategies. Coll Antropol. 23:531–546.
   PubMedGoogle Scholar
• Rudan I, Rudan D, Campbell H, Biloglav Z, Urek R, Padovan M, Sibbett L, Janićijević B, Narančić NS, Rudan P. 2002. Inbreeding and learning disability in Croatian island isolates. Coll Antropol. 26:421–428.
   PubMedGoogle Scholar
• Rudan I, Smolej-Narančić N, Campbell H, Carothers A, Wright A, Janićijević B, Rudan P. 2003. Inbreeding and the genetic complexity of human hypertension. Genetics. 163:1011–1021.
   PubMedGoogle Scholar
• Rudan P, Angel JL, Bennett LA, Janićijević B, Lethbridge MF, Miličić J, Smolej-Narančić N, Sujoldžić A, Šimić D. 1987. Historical processes and biological structure of the populations. Example from the Island of Korčula. Acta Morph Neerl-Scand. 25:69–82.
   PubMedGoogle Scholar
• Rudan P, Janićijević B, Jovanović V, Miličić J, Smolej Narančić N, Sujoldžić A, Szirovicza L, Škarić-Jurić T, Barać Lauc L, Lauc T, Martinović Klarić I, Peričić M, Rudan D, Rudan I. 2004. Holistic anthropological research of Hvar islanders, Croatia - from parish registries to DNA Studies in 33 Years. Coll Antropol. 28:321–343.
   PubMedGoogle Scholar
• Rudan P, Sujoldžić A, Šimić D, Bennet LA, Roberts DF. 2003. Population structure in the eastern Adriatic: the influence of historical processes, migration patterns, isolation, and ecological pressures and their interaction. In Roberts D, Fujiki N, Torizuka K (editor), Isolation, migration, and health. Cambridge, England: SSHB14.
   Google Scholar
• Saftić V, Rudan D, Zgaga L. 2006. Mendelian diseases and conditions in Croatian island populations: historic records and new insights. Croat Med J. 47:543–552.
   PubMedGoogle Scholar
• Saillard J, Forster P, Lynnerup N, Bandelt HJ, Nørby S. 2000. mtDNA variation among Greenland Eskimos: the edge of the Beringian expansion. Am J Hum Genet. 67:718–726.
   PubMed Web of Science ®Google Scholar
• Soares P, Achilli A, Semino O, Davies W, Macaulay V, Bandelt HJ, Torroni A, Richards MB. 2010. The archaeogenetics of Europe. Curr Biol. 20:174–183.
   PubMed Web of Science ®Google Scholar
• Soares P, Ermini L, Thomson N, Mormina M, Rito T, Röhl A, Salas A, Oppenheimer S, Macaulay V, Richards MB. 2009. Correcting for purifying selection: an improved human mitochondrial molecular clock. Am J Hum Genet. 84:1–20.
   Web of Science ®Google Scholar
• Tambets K, Rootsi S, Kivisild T, Help H, Serk P, Loogvali EL, Tolk HV, Reidla M, Metspalu E, Pliss L, Balanovsky O, Pshenichnov A, Balanovska E, Gubinam, Zhadanov S, Osipova L, Damba L, Voevoda M, Kutuev I, Bermisheva M, Khusnutdinova E, Gusar V, Grechanina E, Parik J, Pennarun E, Richard C, Chaventre A, Moisan JP, Barać L, Peričić M, Rudan P, Terzić R, Mikerezi I, Krumina A, Baumanis V, Koziel S, Rickards O, De Stefano GF, Anagnou N, Pappa KI, Michalodimitrakis E, Ferák V, Füredi S, Komel R, Beckman L, Villems R. 2004. The Western and Eastern roots of the Saami-the story of genetic ‘Outliers’ told by mitochondrial DNA and Y chromosomes. Am J Hum Genet. 74:661–682.
   PubMed Web of Science ®Google Scholar
• Tolk HV, Peričić M, Barać L, Martinović Klarić I, Janićijević B, Rudan I, Parik J, Villems R, Rudan P. 2000. MtDNA haplogroups in the populations of Croatian Adriatic Islands. Coll Antropol. 24:267–279.
   PubMedGoogle Scholar
• Torroni A, Bandelt HJ, D'urbano L, Lahermo P, Moral P, Sellitto D, Rengo C, Forster P, Savontaus ML, Bonne-Tamir B, Scozzari R. 1998. MtDNA analysis reveals a major Late Paleolithic population expansion from southwestern to northeastern Europe. Am J Hum Genet. 62:1137–1152.
   PubMed Web of Science ®Google Scholar
• Torroni A, Bandelt HJ, Macaulay V, Richards M, Cruciani F, Rengo C, Martinez-Cabrera V, Villems R, Kivisild T, Metspalu E, Parik J, Tolk HV, Tambets K, Forster P, Karger B, Francalacci P, Rudan P, Janicijevic B, Rickards O, Savontaus ML, Huoponen K, Laitinen V, Koivumäki S, Sykes B, Hickey E, Novelletto A, Moral P, Sellitto D, Coppa A, Al-Zaheri N, Santachiara-Benerecetti AS, Semino O, Scozzari R. 2001. A signal, from human mtDNA, of postglacial recolonization in Europe. Am J Hum Genet. 69:844–852.
   PubMed Web of Science ®Google Scholar
• Underhill P, Kivisild T. 2007. Use of Y chromosome and mitochondrial DNA population structure in tracing human migrations. Annu Rev Genet. 41:539–564.
   PubMed Web of Science ®Google Scholar
• Van Oven M, Kayser M. 2009. Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Hum Mutat. 30:386–394.
   PubMed Web of Science ®Google Scholar
• Vitart V, Biloglav Z, Hayward C, Janićijević B, Smolej-Narančić N, Barać L, Peričić M, Martinović Klarić I, Škarić-Jurić T, Barbalić M, Polašek O, Kolčić I, Carothers A, Rudan P, Hastie N, Wright A, Campbell H, Rudan I. 2006. 3000 years of solitude: extreme differentiation in the island isolates of Dalmatia, Croatia. Eur J of Hum Genet. 14:478–487.
   PubMedGoogle Scholar