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Research Paper

The place of Slovakian paternal diversity in the clinal European landscape

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Pages 511-522 | Received 30 Jul 2014, Accepted 06 Oct 2014, Published online: 06 Nov 2014

References

  • Adams SM, Bosch E, Balaresque PL, Ballereau SJ, Lee AC, Arroyo E, Lopez-Parra AM, et al. 2008. The genetic legacy of religious diversity and intolerance: paternal lineages of Christians, Jews, and Muslims in the Iberian Peninsula. Am J Hum Genet 83:725–736
  • Balaresque P, Bowden GR, Adams SM, Leung HY, King TE, Rosser ZH, Goodwin J, et al. 2010. A predominantly neolithic origin for European paternal lineages. PLoS Biol 8:e1000285
  • Ballantyne KN, Goedbloed M, Fang R, Schaap O, Lao O, Wollstein A, Choi Y, et al. 2010. Mutability of Y-chromosomal microsatellites: rates, characteristics, molecular bases, and forensic implications. Am J Hum Genet 87:341–353
  • Bandelt H-J, Forster P, Rohl A. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16:37–48
  • Barac L, Pericic M, Klaric IM, Rootsi S, Janicijevic B, Kivisild T, Parik J, et al. 2003. Y chromosomal heritage of Croatian population and its island isolates. Eur J Hum Genet 11:535–542
  • Barbujani G. 2000. Geographic patterns: how to identify them and why. Hum Biol 72:133–153
  • Barford P. 2001. The early Slavs. Culture and society in early Medieval Eastern Europe. New York: Cornell University Press
  • Beleza S, Gusmao L, Lopes A, Alves C, Gomes I, Giouzeli M, Calafell F, et al. 2006. Micro-phylogeographic and demographic history of Portuguese male lineages. Ann Hum Genet 70:181–194
  • Benazzi S, Douka K, Fornai C, Bauer CC, Kullmer O, Svoboda J, Pap I, et al. 2011. Early dispersal of modern humans in Europe and implications for Neanderthal behaviour. Nature 479:525–528
  • Bosch E, Calafell F, Gonzalez-Neira A, Flaiz C, Mateu E, Scheil HG, Huckenbeck W, et al. 2006. Paternal and maternal lineages in the Balkans show a homogeneous landscape over linguistic barriers, except for the isolated Aromuns. Ann Hum Genet 70:459–487
  • Brandt G, Haak W, Adler CJ, Roth C, Szecsenyi-Nagy A, Karimnia S, Moller-Rieker S, et al. 2013. Ancient DNA reveals key stages in the formation of central European mitochondrial genetic diversity. Science 342:257–261
  • Brotherton P, Haak W, Templeton J, Brandt G, Soubrier J, Jane Adler C, Richards SM, et al. 2013. Neolithic mitochondrial haplogroup H genomes and the genetic origins of Europeans. Nat Commun 4:1764
  • Busby GB, Brisighelli F, Sanchez-Diz P, Ramos-Luis E, Martinez-Cadenas C, Thomas MG, Bradley DG, et al. 2012. The peopling of Europe and the cautionary tale of Y chromosome lineage R-M269. Proc Biol Sci 279:884–892
  • Currat M, Silva N. 2013. Investigating European genetic history through computer simulations. Human Heredity 76:142–153
  • Curta F. 2001. The making of the Slavs: history and archaeology of the Lower Danube Region c. 500–700. Cambridge: Cambridge University Press
  • Curta F. 2009. Early slavs in Bohemia and Moravia: a response to my critics. Archeologické Rozhledy 61:725–754
  • Davies W, Valdes P, Ross C, Van Andel TH. 2003. The human presence in Europe during the Last Glacial Period III: site clusters, regional climates and resource attractions. In: Van Andel TH, Davies W, editors. Neanderthals and modern humans in the European landscape during the last glaciation: archaeological results of the Stage 3 Project. Cambridge: The McDonald Institute for Archaeological Research monographs. p 191–220
  • Excoffier L, Lischer HE. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10:564–567
  • Excoffier L, Smouse PE, Quattro JM. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479–491
  • Fisher RA. 1932. Statistical methods for research workers. Edinburgh: Oliver and Boyd
  • Higham T, Compton T, Stringer C, Jacobi R, Shapiro B, Trinkaus E, Chandler B, et al. 2011. The earliest evidence for anatomically modern humans in northwestern Europe. Nature 479:521–524
  • Karafet TM, Mendez FL, Meilerman MB, Underhill PA, Zegura SL, Hammer MF. 2008. New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree. Genome Res 18:830–838
  • Kayser M, Krawczak M, Excoffier L, Dieltjes P, Corach D, Pascali V, Gehrig C, et al. 2001. An extensive analysis of Y-chromosomal microsatellite haplotypes in globally dispersed human populations. Am J Hum Genet 68:990–1018
  • Kayser M, Lao O, Anslinger K, Augustin C, Bargel G, Edelmann J, Elias S, et al. 2005. Significant genetic differentiation between Poland and Germany follows present-day political borders, as revealed by Y-chromosome analysis. Hum Genet 117:428–443
  • Lao O, Lu TT, Nothnagel M, Junge O, Freitag-Wolf S, Caliebe A, Balascakova M, et al. 2008. Correlation between genetic and geographic structure in Europe. Curr Biol 18:1241–1248
  • Lappalainen T, Hannelius U, Salmela E, von Dobeln U, Lindgren CM, Huoponen K, Savontaus ML, et al. 2009. Population structure in contemporary Sweden – a Y-chromosomal and mitochondrial DNA analysis. Ann Hum Genet 73:61–73
  • Luca F, Di Giacomo F, Benincasa T, Popa LO, Banyko J, Kracmarova A, Malaspina P, et al. 2007. Y-chromosomal variation in the Czech Republic. Am J Phys Anthropol 132:132–139
  • Malyarchuk B, Derenko M, Grzybowski T, Lunkina A, Czarny J, Rychkov S, Morozova I, et al. 2004. Differentiation of mitochondrial DNA and Y chromosomes in Russian populations. Hum Biol 76:877–900
  • Mantel N. 1967. The detection of disease clustering and a generalized regression approach. Cancer Res 27:209–220
  • Mendez FL, Krahn T, Schrack B, Krahn AM, Veeramah KR, Woerner AE, Fomine FL, et al. 2013. An African American paternal lineage adds an extremely ancient root to the human Y chromosome phylogenetic tree. Am J Hum Genet 92:454–459
  • Michalakis Y, Excoffier L. 1996. A generic estimation of population subdivision using distances between alleles with special reference for microsatellite loci. Genetics 142:1061–1064
  • Mielnik-Sikorska M, Daca P, Wozniak M, Malyarchuk BA, Bednarek J, Dobosz T, Grzybowski T. 2013. Genetic data from Y chromosome STR and SNP loci in Ukrainian population. Forensic Sci Int Genet 7:200–203
  • Moran PA. 1950. Notes on continuous stochastic phenomena. Biometrika 37:17–23
  • Myres NM, Rootsi S, Lin AA, Jarve M, King RJ, Kutuev I, Cabrera VM, et al. 2011. A major Y-chromosome haplogroup R1b Holocene era founder effect in Central and Western Europe. Eur J Hum Genet 19:95–101
  • Nei M. 1987. Molecular evolutionary genetics. New York: Columbia University Press
  • Neruda P, Nerudová Z. 2013. The Middle-Upper Palaeolithic transition in Moravia in the context of the Middle Danube region. Quarternary Int 294:3–19
  • Neustupný E. 2013. The Corded Ware culture. In: Neustupný E, editor. The prehistory of Bohemia 3, The Eneolithic. Prague: Archeologický ústav AVČR, Praha, v.v.i. p 130–154
  • Niederstatter H, Rampl G, Erhart D, Pitterl F, Oberacher H, Neuhuber F, Hausner I, et al. 2012. Pasture names with Romance and Slavic roots facilitate dissection of Y chromosome variation in an exclusively German-speaking alpine region. PLoS One 7:e41885
  • Novembre J, Johnson T, Bryc K, Kutalik Z, Boyko AR, Auton A, Indap A, et al. 2008. Genes mirror geography within Europe. Nature 456:98–101
  • Pala M, Olivieri A, Achilli A, Accetturo M, Metspalu E, Reidla M, Tamm E, et al. 2012. Mitochondrial DNA signals of late glacial recolonization of Europe from near eastern refugia. Am J Hum Genet 90:915–924
  • Passarino G, Cavalleri GL, Lin AA, Cavalli-Sforza LL, Borresen-Dale AL, Underhill PA. 2002. Different genetic components in the Norwegian population revealed by the analysis of mtDNA and Y chromosome polymorphisms. Eur J Hum Genet 10:521–529
  • Peakall R, Smouse PE. 2012. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research – an update. Bioinformatics 28:2537–2539
  • Pereira L, Richards M, Goios A, Alonso A, Albarran C, Garcia O, Behar DM, et al. 2005. High-resolution mtDNA evidence for the late-glacial resettlement of Europe from an Iberian refugium. Genome Res 15:19–24
  • Petrejcikova E, Sivakova D, Sotak M, Bernasovska J, Bernasovsky I, Rebala K, Boronova I, et al. 2010. Comparison of Y-STR polymorphisms in three different Slovak population groups. Anthropol Anz 68:111–127
  • Petrejcikova E, Sotak M, Bernasovska J, Bernasovsky I, Rebala K, Sovicova A, Boronova I, et al. 2011. Allele frequencies and population data for 11 Y-chromosome STRs in samples from Eastern Slovakia. Forensic Sci Int Genet 5:e53–62
  • Poznik GD, Henn BM, Yee MC, Sliwerska E, Euskirchen GM, Lin AA, Snyder M, et al. 2013. Sequencing Y chromosomes resolves discrepancy in time to common ancestor of males versus females. Science 341:562–565
  • Quintana-Murci L, Semino O, Poloni ES, Liu A, Van Gijn M, Passarino G, Brega A, et al. 1999. Y-chromosome specific YCAII, DYS19 and YAP polymorphisms in human populations: a comparative study. Ann Hum Genet 63:153–166
  • Quintana-Murci L, Veitia R, Fellous M, Semino O, Poloni ES. 2003. Genetic structure of Mediterranean populations revealed by Y-chromosome haplotype analysis. Am J Phys Anthropol 121:157–171
  • R Core Team. 2013. R: a language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing. Available online at: http://www.R-project.org/, accessed
  • Ralph P, Coop G. 2013. The geography of recent genetic ancestry across Europe. PLoS Biol 11:e1001555
  • Rasteiro R, Chikhi L. 2013. Female and male perspectives on the neolithic transition in Europe: clues from ancient and modern genetic data. PLoS One 8:e60944
  • Rebala K, Martinez-Cruz B, Tonjes A, Kovacs P, Stumvoll M, Lindner I, Buttner A, et al. 2013. Contemporary paternal genetic landscape of Polish and German populations: from early medieval Slavic expansion to post-World War II resettlements. Eur J Hum Genet 21:415–422
  • Reynolds J, Weir BS, Cockerham CC. 1983. Estimation of the Coancestry Coefficient: basis for a short-term genetic distance. Genetics 105:767–779
  • Roewer L, Willuweit S, Kruger C, Nagy M, Rychkov S, Morozowa I, Naumova O, et al. 2008. Analysis of Y chromosome STR haplotypes in the European part of Russia reveals high diversities but non-significant genetic distances between populations. Int J Legal Med 122:219–223
  • Rootsi S, Behar DM, Jarve M, Lin AA, Myres NM, Passarelli B, Poznik GD, et al. 2013. Phylogenetic applications of whole Y-chromosome sequences and the Near Eastern origin of Ashkenazi Levites. Nat Commun 4:2928
  • Rootsi S, Magri C, Kivisild T, Benuzzi G, Help H, Bermisheva M, Kutuev I, et al. 2004. Phylogeography of Y-chromosome haplogroup I reveals distinct domains of prehistoric gene flow in Europe. Am J Hum Genet 75:128–137
  • Rosenberg M, editor. 2001. PASSAGE, Pattern Analysis, Spatial Statistic, and Geographic Exegesis. Version I.I. Tempe, AZ: Department of Biology, Arizona State University
  • Sanchez JJ, Borsting C, Hallenberg C, Buchard A, Hernandez A, Morling N. 2003. Multiplex PCR and minisequencing of SNPs–a model with 35 Y chromosome SNPs. Forensic Sci Int 137:74–84
  • Schonberg A, Theunert C, Li M, Stoneking M, Nasidze I. 2011. High-throughput sequencing of complete human mtDNA genomes from the Caucasus and West Asia: high diversity and demographic inferences. Eur J Hum Genet 19:988–994
  • Semino O, Passarino G, Oefner PJ, Lin AA, Arbuzova S, Beckman LE, De Benedictis G, et al. 2000. The genetic legacy of Paleolithic Homo sapiens sapiens in extant Europeans: a Y chromosome perspective. Science 290:1155–1159
  • Shennan S. 2009. Evolutionary demography and the population history of the European early Neolithic. Hum Biol 81:339–355
  • Shennan S, Edinborough K. 2007. Prehistoric population history: from the Late Glacial to the Late Neolithic in Central and Northern Europe. J Archaeolog Sci 34:1339–1345
  • Sikora MJ, Colonna V, Xue Y, Tyler-Smith C. 2013. Modeling the contrasting Neolithic male lineage expansions in Europe and Africa. Investig Genet 4:25
  • Silva NM, Pereira L, Poloni ES, Currat M. 2012. Human neutral genetic variation and forensic STR data. PLoS One 7:e49666
  • Slatkin M. 1995. A measure of population subdivision based on microsatellite allele frequencies. Genetics 139:457–462
  • Soares P, Achilli A, Semino O, Davies W, Macaulay V, Bandelt HJ, Torroni A, et al. 2010. The archaeogenetics of Europe. Curr Biol 20:R174–R183
  • Terberger T. 2013. Le Dernier Maximum glaciaire entre le Rhin et le Danube, un reexamen critique. Memoire de la Societe prehistorique francaise 59:415–443
  • Turek J. 2013. The Bell Beaker culture. In: Neustupný E, editor. The Prehistory of Bohemia 3, The Eneolithic. Prague: Archeologický ústav AVČR, Praha, v.v.i. p 154–177
  • Underhill PA, Myres NM, Rootsi S, Metspalu M, Zhivotovsky LA, King RJ, Lin AA, et al. 2010. Separating the post-Glacial coancestry of European and Asian Y chromosomes within haplogroup R1a. Eur J Hum Genet 18:479–484
  • Underhill PA, Poznik GD, Rootsi S, Jarve M, Lin AA, Wang J, Passarelli B, et al. 2014. The phylogenetic and geographic structure of Y-chromosome haplogroup R1a. Eur J Hum Genet (Epub ahead of print)
  • Volgyi A, Zalan A, Szvetnik E, Pamjav H. 2009. Hungarian population data for 11 Y-STR and 49 Y-SNP markers. Forensic Sci Int Genet 3:e27–e28
  • Wei W, Ayub Q, Chen Y, McCarthy S, Hou Y, Carbone I, Xue Y, et al. 2013a. A calibrated human Y-chromosomal phylogeny based on resequencing. Genome Res 23:388–395
  • Wei W, Ayub Q, Xue Y, Tyler-Smith C. 2013b. A comparison of Y-chromosomal lineage dating using either resequencing or Y-SNP plus Y-STR genotyping. Forensic Sci Int Genet 7:568–572
  • Weir BS, Cockerham CC. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38:1358–1370
  • Zupan A, Vrabec K, Glavac D. 2013. The paternal perspective of the Slovenian population and its relationship with other populations. Ann Hum Biol 40:515–526

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