Nightshift work and genome-wide DNA methylation

References

• Almgren M, Schlinzig T, Gomez-Cabrero D, et al. (2014). Cesarean delivery and hematopoietic stem cell epigenetics in the newborn infant: Implications for future health? Am J Obstet Gynecol. http//dx.doi.org/10.1016/j.ajog.2014.05.014
   PubMed Web of Science ®Google Scholar
• Azzi A, Dallmann R, Casserly A, et al. (2014). Circadian behavior is light-reprogrammed by plastic DNA methylation. Nat Neurosci. 17:377–82
   PubMed Web of Science ®Google Scholar
• Baccarelli A, Bollati V. (2009). Epigenetics and environmental chemicals. Curr Opin Pediatr. 21:243–51
   PubMed Web of Science ®Google Scholar
• Baccarelli A, Wright RO, Bollati V, et al. (2009). Rapid DNA methylation changes after exposure to traffic particles. Am J Respir Crit Care Med. 179:572–8
   PubMed Web of Science ®Google Scholar
• Ball MP, Li JB, Gao Y, et al. (2009). Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells. Nat Biotechnol. 27:361–8
   PubMed Web of Science ®Google Scholar
• Baumann A, Gönnenwein S, Bischoff SC, et al. (2013). The circadian clock is functional in eosinophils and mast cells. Immunology. 140:465–74
   PubMed Web of Science ®Google Scholar
• Bell JT, Pai AA, Pickrell JK, et al. (2011). DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines. Genome Biol. 12:R10
   PubMed Web of Science ®Google Scholar
• Bollati V, Baccarelli A, Hou L, et al. (2007). Changes in DNA methylation patterns in subjects exposed to low-dose benzene. Cancer Res. 67:876–80
   PubMed Web of Science ®Google Scholar
• Bollati V, Baccarelli A, Sartori S, et al. (2010). Epigenetic effects of shiftwork on blood DNA methylation. Chronobiol Int. 27:1093–104
   PubMed Web of Science ®Google Scholar
• Bracci M, Manzella N, Copertaro A, et al. (2014). Rotating-shift nurses after a day off: Peripheral clock gene expression, urinary melatonin, and serum 17-β-estradiol levels. Scand J Work Environ Health. 40:295–304
   PubMed Web of Science ®Google Scholar
• Breitling LP, Yang R, Korn B, et al. (2011). Tobacco-smoking-related differential DNA methylation: 27K discovery and replication. Am J Hum Genet 88:450–7
   PubMed Web of Science ®Google Scholar
• Calvelli T, Denny TN, Paxton H, et al. (1993). Guideline for flow cytometric immunophenotyping: A report from the national institute of allergy and infectious diseases, division of AIDS. Cytometry. 14:702–15
   PubMedGoogle Scholar
• Choi J-Y, James SR, Link PA, et al. (2009). Association between global DNA hypomethylation in leukocytes and risk of breast cancer. Carcinogenesis. 30:1889–97
   PubMedGoogle Scholar
• Costa G, Haus E, Stevens R. (2010). Shift work and cancer – Considerations on rationale, mechanisms, and epidemiology. Scand J Work Environ Health. 36:163–79
   PubMed Web of Science ®Google Scholar
• Davis S, Du P, Bilke S, et al. (2014). Methylumi: Handle illumina methylation data. Version 2.6.1
   Google Scholar
• Eden E, Navon R, Steinfeld I, et al. (2009). GOrilla: A tool for discovery and visualization of enriched GO terms in ranked gene lists. BMC Bioinformatics. 10:48
   PubMed Web of Science ®Google Scholar
• Ehrlich M. (2002). DNA methylation in cancer: Too much, but also too little. Oncogene. 21:5400–13
   PubMed Web of Science ®Google Scholar
• Faraut B, Bayon V, Léger D. (2013). Neuroendocrine, immune and oxidative stress in shift workers. Sleep Medicine Rev. 17:433–44
   PubMed Web of Science ®Google Scholar
• Fu L, Pelicano H, Liu J, et al. (2002). The circadian gene Period2 plays an important role in tumor suppression and DNA damage response in vivo. Cell. 111:41–50
   PubMed Web of Science ®Google Scholar
• Gao Y, Baccarelli A, Shu XO, et al. (2012). Blood leukocyte Alu and LINE-1 methylation and gastric cancer risk in the Shanghai Women’s Health Study. Br J Cancer. 106:585–91
   Google Scholar
• Gery S, Koeffler HP. (2007). The role of circadian regulation in cancer. Cold Spring Harb Symp Quant Biol. 72:459–64
   PubMedGoogle Scholar
• Glossop JR, Nixon NB, Emes RD, et al. (2013). Epigenome-wide profiling identifies significant differences in DNA methylation between matched-pairs of T- and B-lymphocytes from healthy individuals. Epigenetics. 8:1188–97
   PubMed Web of Science ®Google Scholar
• Grivennikov SI, Greten FR, Karin M. (2010). Immunity, inflammation, and cancer. Cell. 140:883–99
   PubMed Web of Science ®Google Scholar
• Hoffman AE, Yi C-H, Zheng T, et al. (2010a). CLOCK in breast tumorigenesis: Genetic, epigenetic, and transcriptional profiling analyses. Cancer Res. 70:1459–68
   PubMed Web of Science ®Google Scholar
• Hoffman AE, Zheng T, Ba Y, Zhu Y. (2008). The circadian gene NPAS2, a putative tumor suppressor, is involved in DNA damage response. Mol Cancer Res. 6:1461–8
   PubMed Web of Science ®Google Scholar
• Hoffman AE, Zheng T, Yi C-H, et al. (2010b). The core circadian gene Cryptochrome 2 influences breast cancer risk, possibly by mediating hormone signaling. Cancer Prev Res (Phila). 3:539–48
   PubMed Web of Science ®Google Scholar
• Hsiung DT, Marsit CJ, Houseman EA, et al. (2007). Global DNA methylation level in whole blood as a biomarker in head and neck squamous cell carcinoma. Cancer Epidemiol Biomarkers Prev. 16:108–14
   PubMed Web of Science ®Google Scholar
• Jones PA. (2012). Functions of DNA methylation: Islands, start sites, gene bodies and beyond. Nat Rev Genet. 13:484–92
   PubMed Web of Science ®Google Scholar
• Khosro S, Alireza S, Omid A, Forough S. (2011). Night work and inflammatory markers. Indian J Occup Environ Med. 15:38–41
   PubMedGoogle Scholar
• Kottorou AE, Antonacopoulou AG, Dimitrakopoulos F-ID, et al. (2012). Altered expression of NFY-C and RORA in colorectal adenocarcinomas. Acta Histochem. 114:553–61
   PubMed Web of Science ®Google Scholar
• Kronholm E, Härmä M, Hublin C, et al. (2006). Self-reported sleep duration in Finnish general population. J Sleep Res. 15: 276–90
   PubMed Web of Science ®Google Scholar
• Lee CC. (2006). Tumor suppression by the mammalian Period genes. Cancer Causes Control. 17:525–30
   PubMed Web of Science ®Google Scholar
• Lewintre EJ, Martín CR, Montaner D, et al. (2009). Analysis of chronic lymphotic leukemia transcriptomic profile: Differences between molecular subgroups. Leukemia Lymphoma. 50:68–79
   PubMed Web of Science ®Google Scholar
• Li J-P, Yang C-Y, Chuang H-C, et al. (2014). The phosphatase JKAP/DUSP22 inhibits T-cell receptor signalling and autoimmunity by inactivating Lck. Nat Commun. 5:3618
   PubMed Web of Science ®Google Scholar
• Liao LM, Brennan P, van Bemmel DM, et al. (2011). LINE-1 methylation levels in leukocyte DNA and risk of renal cell cancer. PLoS One. 6:e27361
   PubMed Web of Science ®Google Scholar
• Mohren DCL, Jansen NWH, Kant IJ, et al. (2002). Prevalence of common infections among employees in different work schedules. J Occup Environ Med. 44:1003–11
   PubMed Web of Science ®Google Scholar
• Moore LE, Huang W-Y, Chung J, Hayes RB. (2003). Epidemiologic considerations to assess altered DNA methylation from environmental exposures in cancer. Ann N Y Acad Sci. 983:181–96
   PubMed Web of Science ®Google Scholar
• Moore LE, Pfeiffer RM, Poscablo C, et al. (2008). Genomic DNA hypomethylation as a biomarker for bladder cancer susceptibility in the Spanish Bladder Cancer Study: A case-control study. Lancet Oncol. 9:359–66
   PubMed Web of Science ®Google Scholar
• Nguyen KD, Fentress SJ, Qiu Y, et al. (2013). Circadian gene Bmal1 regulates diurnal oscillations of Ly6Chi inflammatory monocytes. Science. 341:1483–8
   PubMed Web of Science ®Google Scholar
• Pilcher JJ, Lambert BJ, Huffcutt AI. (2000). Differential effects of permanent and rotating shifts on self-report sleep length: A meta-analytic review. Sleep. 23:155–63
   PubMed Web of Science ®Google Scholar
• Portaluppi F, Smolensky MH, Touitou Y. (2010). Ethics and methods for biological rhythm research on animals and human beings. Chronobiol Int. 27:1911–29
   PubMed Web of Science ®Google Scholar
• Pufulete M, Al-Ghnaniem R, Leather AJM, et al. (2003). Folate status, genomic DNA hypomethylation, and risk of colorectal adenoma and cancer: A case control study. Gastroenterology. 124:1240–8
   PubMed Web of Science ®Google Scholar
• Rauch TA, Wu X, Zhong X, et al. (2009). A human B cell methylome at 100-base pair resolution. Proc Natl Acad Sci USA. 106:671–8
   PubMed Web of Science ®Google Scholar
• Roessler J, Ammerpohl O, Gutwein J, et al. (2012). Quantitative cross-validation and content analysis of the 450k DNA methylation array from Illumina, Inc. BMC Res Notes. 5:210
   PubMedGoogle Scholar
• Shenker NS, Polidoro S, van Veldhoven K, et al. (2013). Epigenome-wide association study in the European Prospective Investigation into Cancer and Nutrition (EPIC-Turin) identifies novel genetic loci associated with smoking. Hum Mol Genet. 22:843–51
   PubMed Web of Science ®Google Scholar
• Shi Y, Cao J, Gao J, et al. (2012). Retinoic acid-related orphan receptor-α is induced in the setting of DNA damage and promotes pulmonary emphysema. Am J Respir Crit Care Med. 186:412–19
   PubMed Web of Science ®Google Scholar
• Suter MA, Aagaard-Tillery KM. (2009). Environmental influences on epigenetic profiles. Semin Reprod Med. 27:380–90
   PubMed Web of Science ®Google Scholar
• Tusher VG, Tibshirani R, Chu G. (2001). Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci U S A. 98:5116–21
   PubMed Web of Science ®Google Scholar
• Vollmers C, Schmitz RJ, Nathanson J, et al. (2012). Circadian oscillations of protein-coding and regulatory RNAs in a highly dynamic mammalian liver epigenome. Cell Metab. 16:833–45
   PubMed Web of Science ®Google Scholar
• Wang X, Yan D, Teng M, et al. (2012). Reduced expression of PER3 is associated with incidence and development of colon cancer. Ann Surg Oncol. 19:3081–8
   PubMed Web of Science ®Google Scholar
• Wang Y, Dong L, Cui H, et al. (2011). Up-regulation of mitochondrial antioxidation signals in ovarian cancer cells with aggressive biologic behavior. J Zhejiang Univ Sci B. 12:346–56
   PubMed Web of Science ®Google Scholar
• Yang WS, Stockwell BR. (2008). Inhibition of casein kinase 1-epsilon induces cancer-cell-selective, PERIOD2-dependent growth arrest. Genome Biol. 9:R92
   PubMed Web of Science ®Google Scholar
• Yu X, Rollins D, Ruhn KA, et al. (2013). TH17 cell differentiation is regulated by the circadian clock. Science. 342:727–30
   PubMed Web of Science ®Google Scholar
• Zhu Y, Stevens RG, Hoffman AE, et al. (2011). Epigenetic impact of long-term shiftwork: Pilot evidence from circadian genes and whole-genome methylation analysis. Chronobiol Int. 28:852–61
   PubMed Web of Science ®Google Scholar