2,314
Views
0
CrossRef citations to date
0
Altmetric
ORIGINAL ARTICLE

Detection and identification of unknown streptococcal populations in clinical samples

&
Pages 233-240 | Received 18 Mar 2009, Accepted 04 Nov 2009, Published online: 26 Dec 2009

References

  • Whitney CN, Farley MM, Hadler J, Harrison LH, Lexau C, Reingold A, . Increasing prevalence of multidrug resistant Streptococcus pneumoniae in the United States. N Engl J Med 1999; 343:1917–24.
  • Cunningham MW. Pathogenesis of group A streptococcal infections. Clin Microbiol 2000; 13:470–511.
  • Facklam R, Sahm DS, Teixeira LM. 1999. Streptococci. Murray PR, Baron EJ, Pfaller MA, Tenover FC, Yolken, RH, Manual of clinical microbiology. Washington, DC: ASM Press. Chapter 17.
  • Lanie JA, Ng WL, Kazmierczak KM, Andrzejewski TM, Davidsen TM, Wayne KJ, . Genome sequence of Avery's virulent serotype 2 strain D39 of Streptococcus pneumoniae and comparison with that of unencapsulated laboratory strain R6. J Bacteriol 2007;189:38–51.
  • Ruoff KL, Miller SI, Garner CV, Ferraro MJ, Calderwood SB. Bacteremia with Streptococcus bovis and Streptococcus salivarius: clinical correlates of more accurate identification of isolates. J Clin Microbiol 1989;27:305–8.
  • Ellmerich S, Scholler M, Duranton B, Gosse F, Galluser M, Klein JP, . Promotion of intestinal carcinogenesis by Streptococcus bovis. Carcinogenesis 2000;21:753–6.
  • Klein RS, Recco RA, Catalano MT, Edberg SC, Casey JI, Steigbigel NH. Association of Streptococcus bovis with carcinoma of the colon. N Engl J Med 1977;297:800–2.
  • Biarc J, Nguyen IS, Pini A, Gosse F, Richert S, Thierse D, . Carcinogenic properties of proteins with pro-inflammatory activity from Streptococcus infantarius (formerly S. bovis). Carcinogenesis 2004;25:1477–84.
  • Gold JS, Bayar S, Salem RR. Association of Streptococcus bovis bacteremia with colonic neoplasia and extracolonic malignancy. Arch Surg 2004;139:760–5.
  • Lee RA, Woo PC, To AP, Lau SK, Wong SS, Yuen KY. Geographical difference of disease association in Streptococcus bovis bacteremia. J Med Microbiol 2003;52:903–8.
  • Betriu C, Culebras E, Gomez M, Rodríguez-Avial I, Sanchez BA, Agreda MC, . Erythromycin and clindamycin resistance and telithromycin susceptibility in Streptococcus agalactiae. Antimicrob Agents Chemother 2003;47:1112–4.
  • Chen Z, Saxena D, Caufield PW, Ge Y, Wang M, Li Y. Development of species-specific primers for detection of Streptococcus mutans in mixed bacterial samples. FEMS Microbiol Lett 2007;272:154–62.
  • Kresken M, Henrichfreise B, Bagel S, Brauers J, Wiedemann B. High prevalence of the ermB Gene among erythromycin-resistant Streptococcus pneumoniae isolates in Germany during the winter. Antimicrob Agents Chemother 2004;48:3193–5.
  • Picard FJ, Ke D, Boudreau DK, Boissinot M, Huletsky A, Richard D, . Use of tuf sequences for genus-specific PCR detection and phylogenetic analysis of 28 streptococcal species. J Clin Microbiol 2004;42:3686–95.
  • Muyzer G, deWaal EC, Uitterlinden AG. Profiling of complex microbial populations by denaturing gradient gel elec-trophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 1993;59:695–700.
  • Heilig GHJ, Zoetendal EG, Vaughan E, Marteau P, Akkermans ADL, de Vos WM. Molecular diversity of Lacto-bacillus spp. and other lactic acid bacteria in the human intestine as determined by specific amplification of 16S ribosomal DNA. Appl Environ Microbiol 2002;68:114–23.
  • Li Y, Ku CYS, Xu J, Sacena D, Caufield PW. Survey of oral microbiota diversity using PCR-based denaturing gradient gel electrophoresis. J Dent Res 2005;84:559–64.
  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997;25:4876–82.
  • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, . Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997;25:3389–402.
  • Hall T. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 1999;41:95–8.
  • Larsen N, Olsen GJ, Maidak B, McCaughey L, Overbeek R, Macke TJ, . The ribosomal database project. Nucleic Acids Res 1993;21:3021–3.
  • Wang X, Heazlewood SP, Krause DO, Florin TH. Molecular characterization of the microbial species that colonize human ileal and colonic mucosa by using 16S rDNA sequence analysis. J Appl Microbiol 2003;95508–20.
  • Hayashi H, Sakamoto M, Benno Y. Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods. Microbiol Immunol 2002;46:535–48.
  • Wade W. Unculturable bacteria – the uncharacterized organisms that cause oral infections. J R Soc Med 2002;95:81–3.
  • Yogita N. Viable but non-culturable bacteria: their impact on public health. Curr Science 2005;89:1650
  • Kawamura Y, Whiley R, Shu S, Ezaki T, Hardie J. Genetic approaches to the identification of the mitis group within the genus Streptococcus. Microbiology 1999;145 (Pt 9): 2605–13.
  • Kawamura Y, Hou X, Sultana F, Miura H, Ezaki T. Determination of 16S rRNA sequences of Streptococcus mitis and Streptococcus gordonii and phylogenetic relationships among members of the genus Streptococcus. Int J Syst Bacteriol 1995;45:406–8 published erratum appears in Int J Syst Bacteriol 1995; 45:882.
  • Köhler W. The present state of species within the genera Streptococcus and Enterococcus. Int J Med Microbiol 2007;297:133–50.
  • Schleifer R, Kilpper-Balz K. Transfer of Streptococcus faecalis and Streptococcus faecium to the genus Enterococcus nom. rev. as Enterococcus faecalis comb. nov. and Enterococcus faecium comb. nov. Int J Syst Bacteriol 1984;34:31–4.
  • Eckburg PB, Bik EM, Bernstein CN, Purdom E, Dethlefsen L, Sargent M, . Diversity of the human intestinal micro-bial flora. Science 2005;308:1635–8.
  • Green GL, Brostoff J, Hudspith B, Michael M, Mylonaki M, Rayment N, . Molecular characterization of the bacteria adherent to human colorectal mucosa. J Appl Microbiol 2006;100:460–9.
  • Martinez-Medina M, Aldeguer X, Gonzalez-Huix F, Acero D, Garcia-Gil LJ. Abnormal microbiota composition in the ileocolonic mucosa of Crohn's disease patients as revealed by polymerase chain reaction-denaturing gradient gel electrophoresis. Inflamm Bowel Dis 2006;12:1136–45.