73
Views
5
CrossRef citations to date
0
Altmetric
Research Article

Markov random field model for segmenting large populations of lipid vesicles from micrographs

, &
Pages 315-323 | Received 09 Nov 2010, Accepted 08 Mar 2011, Published online: 26 May 2011

References

  • Alomari RS, Kompalli S, Chaudhary V. (2008). Segmentation of the liver from abdominal CT using Markov random field model and GVF snakes. Proc. Int. Conf. on Complex, Intel. and Software Intensive Sys., 293–298.
  • Barauskas J, Cervin C, Jankunec M, Spandyreva M, Ribokaite K, Tiberg F, Johnsson M. (2010). Interactions of lipid-based liquid crystalline nanoparticles with model and cell membranes. Int. J. Pharmaceutics, 391(1-2), 284–291.
  • Besag J. (1986). On the statistical analysis of dirty pictures. Journal of the Royal Statistical Society, Series B, 48:259–302.
  • Drobne D, Kralj-Iglic V. (2009). Lipid membranes as tools in nanotoxicity studies. In: Advances in planar lipid bilayers and liposomes. Amsterdam; Elsevier: Academic Press, 10:121–134.
  • Geman S, Geman D. (1984). Stochastic relaxation, Gibbs distributions, and the Bayesian restoration of images. IEEE Transactions on Pattern Analysis and Machine Intelligence, 6:721–741.
  • Gruhn T, Franke T, Dimova R, Lipowsky R. (2007). Novel method for measuring the adhesion energy of vesicles. Langmuir, 23(10):5423–5429.
  • Held K, Kops R, Krause BJ, Wells WM, Kikinis R, Mueller-Gaertner HW. (1997). Markov random field segmentation of brain MR images. IEEE Transactions on Medical Imaging, 16(6):878–886.
  • Hong S, Leroueil PR, Janus EK, Peters JL, Kober MM, Islam MT, Orr BG, Baker JR, Banaszak Holl MM. (2006). Interaction of polycationic polymers with supported lipid bilayers and cells: nanoscale hole formation and enhanced membrane permeability. Bioconjug Chem., 17(3):728–34.
  • Imparato A, Shillcock JC, Lipowsky R. (2005). Shape fluctuations and elastic properties of two-component bilayer membranes. Europhys. Letters, 69(4):650–656.
  • Kato Z, Pong TC. (2006). A Markov random field image segmentation model for color textured images. Image and Vision Computing, 24:1103–1114.
  • Li S. (2009). Random Field Models in Image Analysis. Computer Science Workbench 3rd ed., 22:362.
  • Liu JZ, Hopfinger AJ. (2008). Identification of possible sources of nanotoxicity from carbon nanotubes inserted into membrane bilayers using membrane interaction quantitative structure-activity relationship analysis. Chem. Res. Toxicol., 21(2):459–466.
  • Leirer CT, Wunderlich B, Wixforth A, Schneider MF. (2009). Thermodynamic relaxation drives expulsion in giant unilamellar vesicles. Physical Biology, 6(1):016011–4.
  • Pecreaux J, Dobereiner HG. (2004). Refined contour analysis of giant unilamellar vesicles. European Physical Journal E, 13(3):277–290.
  • Peterlin P, Jaklic G, Pisanski T. (2009). Determining membrane permeability of giant phospholipid vesicles from a series of videomicroscopy images. Measurement Science Technology, 20(5).
  • Usenik P, Vrtovec T, Pernus F, Likar B. (2010). Automated Tracking of Vesicles in Phase Contrast Microscopy Images. 2010 Int. Conf. Pattern Recognition, Turkey 2010.
  • Valant J, Drobne D, Sepcic K, Jemec A, Kogej K, Kostanjsek R. (2009). Hazardous potential of manufactured nanoparticles identified by in vivo assay. J. Hazard. Material., 171(1-3):160–165.
  • Zupanc J, Valant J, Drobne D, Kralj-Iglic V, Iglic A. (2010a). A new approach to analyse effects of nanoparticles on lipid vesicles. Int. J. Biomedical Nanoscience and Nanotechnology, 1(1):34–51.
  • Zupanc J, Bas E, Erdogmus D. (2010b). Analysis of Lipid Vesicle Populations from Microscopy Video Sequences, 32nd Annual International Conference of the IEEE EMBS.
  • Zupanc J, Dobnikar A, Drobne D, Valant J, Erdogmus D, Bas E. (2011). Biological reactivity of nanoparticles: mosaics from optical microscopy videos of giant lipid vesicles. Journal of Biomedical Optics, 16(2):0260031–10.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.