Transcriptional modulation of micro-RNA in human cells differing in radiation sensitivity

References

• Akerman GS, Rosenzweig BA, Domon OE, Tsai CA, Bishop ME, McGarrity LJ, Macgregor JT, Sistare FD, Chen JJ, Morris SM. 2005. Alterations in gene expression profiles and the DNA-damage response in ionizing radiation-exposed TK6 cells. Environmental and Molecular Mutagenesis 45:188–205.
   PubMedGoogle Scholar
• Amundson SA, Xia F, Wolfson K, Liber HL. 1993. Different cytotoxic and mutagenic responses induced by X-rays in two human lymphoblastoid cell lines derived from a single donor. Mutation Research 286:233–241.
   PubMedGoogle Scholar
• Baehrecke EH. 2003. miRNAs: Micro managers of programmed cell death. Current Biology 13:R473–R475.
   Google Scholar
• Bakalkin G, Yakovleva T, Selivanova G, Magnusson KP, Szekely L, Kiseleva E, Klein G, Terenius L, Wiman KG. 1994. p53 binds single-stranded DNA ends and catalyzes DNA renaturation and strand transfer. Proceedings of the National Academy of Sciences of the USA 91:413–417.
   PubMed Web of Science ®Google Scholar
• Bartel DP. 2004. MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 116:281–297.
   PubMed Web of Science ®Google Scholar
• Brennecke J, Hipfner DR, Stark A, Russell RB, Cohen SM. 2003. Bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila. Cell 113:25–36.
   PubMed Web of Science ®Google Scholar
• Calin GA, Dumitru CD, Shimizu M, Bichi R, Zupo S, Noch E, Aldler H, Rattan S, Keating M, Rai K, Rassenti L, Kipps T, Negrini M, Bullrich F, Croce CM. 2002. Frequent deletions and down-regulation of micro-RNA genes miR15 and miR16 at 13q14 in chronic lymphocytic leukemia. Proceedings of the National Academy of Sciences of the USA 99:15524–15529.
   PubMed Web of Science ®Google Scholar
• Chaudhry MA. 2006a. Bystander effect: Biological endpoints and microarray analysis. Mutation Research 597:98–112.
   PubMed Web of Science ®Google Scholar
• Chaudhry MA. 2006b. Radiation-induced gene expression profile of human cells deficient in 8-hydroxy-2′-deoxyguanine glycosylase. International Journal of Cancer 118:633–642.
   PubMed Web of Science ®Google Scholar
• Chaudhry MA. 2007. Base excision repair of ionizing radiation-induced DNA damage in G1 and G2 cell cycle phases. Cancer Cell International 7:15.
   PubMed Web of Science ®Google Scholar
• Chaudhry MA. 2008a. Analysis of gene expression in normal and cancer cells exposed to gamma-radiation. Journal of Biomedicine and Biotechnology 2008:541678.
   PubMedGoogle Scholar
• Chaudhry MA. 2008b. Biomarkers for human radiation exposure. Journal of Biomedical Science 15:557–563.
   PubMed Web of Science ®Google Scholar
• Chaudhry MA. 2009. Real-time PCR analysis of micro-RNA expression in ionizing radiation-treated cells. Cancer Biotherapy and Radiopharmaceuticals 24:49–56.
   PubMed Web of Science ®Google Scholar
• Chen CZ, Li L, Lodish HF, Bartel DP. 2004. MicroRNAs modulate hematopoietic lineage differentiation. Science 303:83–86.
   PubMed Web of Science ®Google Scholar
• Cho W. 2007. OncomiRs: The discovery and progress of microRNAs in cancers. Molecular Cancer 6:60.
   PubMed Web of Science ®Google Scholar
• Chung EY, Dews M, Cozma D, Yu D, Wentzel EA, Chang TC, Schelter JM, Cleary MA, Mendell JT, Thomas-Tikhonenko A. 2008. c-Myb oncoprotein is an essential target of the dleu2 tumor suppressor microRNA cluster. Cancer Biology and Therapy 7.
   Google Scholar
• Cimmino A, Calin GA, Fabbri M, Iorio MV, Ferracin M, Shimizu M, Wojcik SE, Aqeilan RI, Zupo S, Dono M, Rassenti L, Alder H, Volinia S, Liu CG, Kipps TJ, Negrini M, Croce CM. 2005. miR-15 and miR-16 induce apoptosis by targeting BCL2. Proceedings of the National Academy of Sciences of the USA 102:13944–13949.
   PubMed Web of Science ®Google Scholar
• Davoren PA, McNeill RE, Lowery AJ, Kerin MJ, Miller N. 2008. Identification of suitable endogenous control genes for microRNA gene expression analysis in human breast cancer. BMC Molecular Biology 9:76.
   PubMed Web of Science ®Google Scholar
• Fontana L, Fiori ME, Albini S, Cifaldi L, Giovinazzi S, Forloni M, Boldrini R, Donfrancesco A, Federici V, Giacomini P, Peschle C, Fruci D. 2008. Antagomir-17-5p abolishes the growth of therapy-resistant neuroblastoma through p21 and BIM. PLoS One 3:e2236.
   PubMed Web of Science ®Google Scholar
• Frankel LB, Christoffersen NR, Jacobsen A, Lindow M, Krogh A, Lund AH. 2008. Programmed cell death 4 (PDCD4) is an important functional target of the microRNA miR-21 in breast cancer cells. Journal of Biological Chemistry 283:1026–1033.
   PubMed Web of Science ®Google Scholar
• Goodsell DS. 1999. The molecular perspective: The ras oncogene. Oncologist 4:263–264.
   PubMedGoogle Scholar
• Harvey M, Sands AT, Weiss RS, Hegi ME, Wiseman RW, Pantazis P, Giovanella BC, Tainsky MA, Bradley A, Donehower LA. 1993. In vitro growth characteristics of embryo fibroblasts isolated from p53-deficient mice. Oncogene 8:2457–2467.
   PubMed Web of Science ®Google Scholar
• He L, Thomson JM, Hemann MT, Hernando-Monge E, Mu D, Goodson S, Powers S, Cordon-Cardo C, Lowe SW, Hannon GJ, Hammond SM. 2005. A microRNA polycistron as a potential human oncogene. Nature 435:828–833.
   PubMed Web of Science ®Google Scholar
• Inoue M, Shen GP, Chaudhry MA, Galick H, Blaisdell JO, Wallace SS. 2004. Expression of the oxidative base excision repair enzymes is not induced in TK6 human lymphoblastoid cells after low doses of ionizing radiation. Radiation Research 161:409–417.
   PubMed Web of Science ®Google Scholar
• Johnson SM, Grosshans H, Shingara J, Byrom M, Jarvis R, Cheng A, Labourier E, Reinert KL, Brown D, Slack FJ. 2005. RAS is regulated by the let-7 microRNA family. Cell 120:635–647.
   PubMed Web of Science ®Google Scholar
• Kefas B, Godlewski J, Comeau L, Li Y, Abounader R, Hawkinson M, Lee J, Fine H, Chiocca EA, Lawler S, Purow B. 2008. microRNA-7 inhibits the epidermal growth factor receptor and the Akt pathway and is down-regulated in glioblastoma. Cancer Research 68:3566–3572.
   PubMed Web of Science ®Google Scholar
• Kuerbitz SJ, Plunkett BS, Walsh WV, Kastan MB. 1992. Wild-type p53 is a cell cycle checkpoint determinant following irradiation. Proceedings of the National Academy of Sciences of the USA 89:7491–7495.
   PubMed Web of Science ®Google Scholar
• Lewis BP, Burge CB, Bartel DP. 2005. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120:15–20.
   PubMed Web of Science ®Google Scholar
• Livak KJ, Schmittgen TD. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25:402–408.
   PubMed Web of Science ®Google Scholar
• Lowe SW, Schmitt EM, Smith SW, Osborne BA, Jacks T. 1993. p53 is required for radiation-induced apoptosis in mouse thymocytes. Nature 362:847–849.
   PubMed Web of Science ®Google Scholar
• Meltzer PS. 2005. Cancer genomics: Small RNAs with big impacts. Nature 435:745–746.
   PubMed Web of Science ®Google Scholar
• Meng F, Henson R, Wehbe-Janek H, Ghoshal K, Jacob ST, Patel T. 2007. MicroRNA-21 regulates expression of the PTEN tumor suppressor gene in human hepatocellular cancer. Gastroenterology 133:647–658.
   PubMed Web of Science ®Google Scholar
• Michael MZ, Sm OC, Van Holst Pellekaan NG, Young GP, James RJ. 2003. Reduced accumulation of specific microRNAs in colorectal neoplasia. Molecular Cancer Research 1:882–891.
   PubMed Web of Science ®Google Scholar
• Olsen PH, Ambros V. 1999. The lin-4 Regulatory RNA controls developmental timing in Caenorhabditis elagans by blocking LIN-14 protein synthesis after the initiation of translation. Developmental Biology 216:671–680.
   PubMed Web of Science ®Google Scholar
• Peng Y, Zhang Q, Nagasawa H, Okayasu R, Liber H, Bedford JS. 2002. Silencing expression of the catalytic subunit of DNA-dependent protein kinase by small interfering RNA sensitizes human cells for radiation-induced chromosome damage, cell killing, and mutation. Cancer Research 62:6400–6404.
   PubMed Web of Science ®Google Scholar
• Sayed D, Rane S, Lypowy J, He M, Chen IY, Vashistha H, Yan L, Malhotra A, Vatner D, Abdellatif M. 2008. MicroRNA-21 targets Sprouty2 and promotes cellular outgrowths. Molecular Biology of Cell 19:3272–3282.
   PubMed Web of Science ®Google Scholar
• Shahi P, Loukianiouk S, Bohne-Lang A, Kenzelmann M, Kuffer S, Maertens S, Eils R, Grone HJ, Gretz N, Brors B. 2006. Argonaute – a database for gene regulation by mammalian microRNAs. Nucleic Acids Research 34:D115–D118.
   PubMed Web of Science ®Google Scholar
• Shin S, Cha HJ, Lee EM, Jung JH, Lee SJ, Park IC, Jin YW, An S. 2009. MicroRNAs are significantly influenced by p53 and radiation in HCT116 human colon carcinoma cells. International Journal of Oncology 34:1645–1652.
   PubMed Web of Science ®Google Scholar
• Spitz DR, Azzam EI, Li JJ, Gius D. 2004. Metabolic oxidation/reduction reactions and cellular responses to ionizing radiation: A unifying concept in stress response biology. Cancer and Metastasis Reviews 23:311–322.
   PubMed Web of Science ®Google Scholar
• Tsai MH, Chen X, Chandramouli GV, Chen Y, Yan H, Zhao S, Keng P, Liber HL, Coleman CN, Mitchell JB, Chuang EY. 2006. Transcriptional responses to ionizing radiation reveal that p53R2 protects against radiation-induced mutagenesis in human lymphoblastoid cells. Oncogene 25:622–632.
   PubMed Web of Science ®Google Scholar
• Xi Y, Edwards JR, Ju J. 2007. Investigation of miRNA biology by bioinformatic tools and impact of miRNAs in colorectal cancer-regulatory relationship of c-Myc and p53 with miRNAs. Cancer Information 3:245–253.
   PubMedGoogle Scholar
• Xia F, Amundson SA, Nickoloff JA, Liber HL. 1994a. Different capacities for recombination in closely related human lymphoblastoid cell lines with different mutational responses to X-irradiation. Molecular Cell Biology 14:5850–5857.
   PubMed Web of Science ®Google Scholar
• Xia F, Wang X, Wang Y-H, Tsang N-M, Yandell DW, Kelsey KT, Liber HL. 1994b. Altered p53 status correlates with differences in sensitivity to radiation-induced mutation and apoptosis in two closely related lymphoblast lines. Cancer Research 55:12–15.
   Google Scholar
• Xi Y, Edwards JR, Ju J. 2007. Investigation of miRNA biology by bioinformatic tools and impact of miRNAs in colorectal cancer – regulatory relationship of c-Myc and p53 with miRNAs. Cancer Information 3:245–253.
   PubMedGoogle Scholar
• Yanaihara N, Caplen N, Bowman E, Seike M, Kumamoto K, Yi M, Stephens RM, Okamoto A, Yokota J, Tanaka T, Calin GA, Liu CG, Croce CM, Harris CC. 2006. Unique microRNA molecular profiles in lung cancer diagnosis and prognosis. Cancer Cell 9:189–198.
   PubMed Web of Science ®Google Scholar
• Zhu S, Si ML, Wu H, Mo YY. 2007. MicroRNA-21 targets the tumor suppressor gene tropomyosin 1 (TPM1). Journal of Biological Chemistry 282:14328–14336.
   PubMed Web of Science ®Google Scholar
• Zhu X, Mao X, Hurren R, Schimmer AD, Ezzat S, Asa SL. 2008. Deoxyribonucleic acid methyltransferase 3B promotes epigenetic silencing through histone 3 chromatin modifications in pituitary cells. Journal of Clinical Endocrinology and Metabolism 93:3610–3617.
   PubMedGoogle Scholar
• Zschenker O, Borgmann K, Streichert T, Meier I, Wrona A, Dikomey E. 2006. Lymphoblastoid cell lines differing in p53 status show clear differences in basal gene expression with minor changes after irradiation. Radiotherapy and Oncology 80:236–249.
   PubMedGoogle Scholar