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Research Article

Evaluation of repetitive sequence PCR and PCR-mass spectrometry for the identification of clinically relevant Candida species

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Pages 259-265 | Received 11 Feb 2011, Accepted 22 Jun 2011, Published online: 23 Aug 2011

References

  • Ellepola AN, Morrison CJ. Laboratory diagnosis of invasive candidiasis. J Microbiol 2005; 43: 65–84.
  • Gomez-Lopez A, Zaragoza O, Rodriguez-Tudela JL, Cuenca-Estrella M. Pharmacotherapy of yeast infections. Expert Opin Pharmacother 2008; 9: 2801–2816.
  • Verweij PE, Breuker IM, Rijs AJ, Meis JF. Comparative study of seven commercial yeast identification systems. J Clin Pathol 1999; 52: 271–273.
  • Iwen PC, Hinrichs SH, Rupp ME. Utilization of the internal transcribed spacer regions as molecular targets to detect and identify human fungal pathogens. Med Mycol 2002; 40: 87–109.
  • Leaw SN, Chang HC, Sun HF, . Identification of medically important yeast species by sequence analysis of the internal transcribed spacer regions. J Clin Microbiol 2006; 44: 693–699.
  • Stender H, Fiandaca M, Hyldig-Nielsen JJ, Coull J. PNA for rapid microbiology. J Microbiol Meth 2002; 48: 1–17.
  • Reller ME, Mallonee AB, Kwiatkowski NP, Merz WG. Use of peptide nucleic acid-fluorescence in situ hybridization for definitive, rapid identification of five common Candida species. J Clin Microbiol 2007; 45: 3802–3803.
  • Versalovic J, Koeuth T, Lupski JR. Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res 1991; 19: 6823–6831.
  • Healy M, Reece K, Walton D, . Identification to the species level and differentiation between strains of Aspergillus clinical isolates by automated repetitive-sequence-based PCR. J Clin Microbiol 2004; 42: 4016–4024.
  • Healy M, Reece K, Walton D, . Use of the Diversi Lab System for species and strain differentiation of Fusarium species isolates. J Clin Microbiol 2005; 43: 5278–5280.
  • Steinmann J, Schmidt D, Buer J, Rath PM. Discrimination of Scedosporium prolificans against Pseudallescheria boydii and Scedosporium apiospermum by semiautomated repetitive sequence-based PCR. Med Mycol 2010; 49: 475–483.
  • Deyde VM, Sampath R, Gubareva LV. RT-PCR/electrospray ionization mass spectrometry approach in detection and characterization of influenza viruses. Expert Rev Mol Diagn 2011; 11: 41–52.
  • Ecker DJ, Sampath R, Massire C, . Ibis T5000: a universal biosensor approach for microbiology. Nat Rev Microbiol 2008; 6: 553–558.
  • Ecker DJ, Sampath R, Blyn LB, . Rapid identification and strain-typing of respiratory pathogens for epidemic surveillance. Proc Natl Acad Sci USA 2005; 102: 8012–8017.
  • Ecker DJ, Sampath R, Li H, . New technology for rapid molecular diagnosis of bloodstream infections. Expert Rev Mol Diagn 2010; 10: 399–415.
  • Eshoo MW, Whitehouse CA, Zoll ST, . Direct broad-range detection of alphaviruses in mosquito extracts. Virology 2007; 368: 286–295.
  • Ecker DJ, Drader JJ, Gutierrez J, . The Ibis T5000 Universal Biosensor: an automated platform for pathogen identification and strain typing. J Lab Autom 2006; 11: 341–351.
  • Hofstadler SA, Sampath R, Blyn LB, . TIGER: the universal biosensor. Int J Mass Spectrom 2005; 242: 23–41.
  • Innis MA, Gelfand DH, Sninsky JJ, White TJ. PCR Protocols: A Guide to Methods and Applications. New York: Academic Press, Inc.; 1990.
  • Agresti A, Coull B. Approximate is better than ‘exact’ for interval estimation of binomial proportions. Am Stat 1988; 52: 119–126.
  • Miceli MH, Diaz JA, Lee SA. Emerging opportunistic yeast infections. Lancet Infect Dis 2011; 11: 142–151.
  • Hansen D, Healy M, Reece K, Smith C, Woods GL. Repetitive-sequence-based PCR using the DiversiLab system for identification of Aspergillus species. J Clin Microbiol 2008; 46: 1835–1839.
  • Pounder JI, Williams S, Hansen D, . Repetitive-sequence-PCR-based DNA fingerprinting using the DiversiLab system for identification of commonly encountered dermatophytes. J Clin Microbiol 2005; 43: 2141–2147.
  • Pounder JI, Hansen D, Woods GL. Identification of Histoplasma capsulatum, Blastomyces dermatitidis, and Coccidioides species by repetitive-sequence-based PCR. J Clin Microbiol 2006; 44: 2977–2982.
  • Wise MG, Healy M, Reece K, . Species identification and strain differentiation of clinical Candida isolates using the DiversiLab system of automated repetitive sequence-based PCR. J Med Microbiol 2007; 56: 778–787.
  • Sampath R, Hall TA, Massire C, . Rapid identification of emerging infectious agents using PCR and electrospray ionization mass spectrometry. Ann N Y Acad Sci 2007; 1102: 109–120.
  • Bader O, Weig M, Taverne-Ghadwal L, . Improved clinical laboratory identification of human pathogenic yeasts by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Clin Microbiol Infect 2011; 17:1359–1365.
  • Putignani L, Del CF, Onori M, . MALDI-TOF mass spectrometry proteomic phenotyping of clinically relevant fungi. Mol Biosyst 2010; 7: 620–629.

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