Isolation of the detoxification enzyme EgP450 from an oil palm EST library

References

• Aken BV, Correa PA, Schnoor JL. (2010). Phytoremediation of polychlorinated biphenyls: New trends and promises. Environ Sci Technol, 44, 2767–2776.
   PubMed Web of Science ®Google Scholar
• Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. (1990). Basic local alignment search tool. J Mol Biol, 215, 403–410.
   PubMed Web of Science ®Google Scholar
• Arnold K, Bordoli L, Kopp J, Schwede T. (2006). The SWISS-MODEL workspace: A web-based environment for protein structure homology modelling. Bioinformatics, 22, 195–201.
   PubMed Web of Science ®Google Scholar
• Batard Y, LeRet M, Schalk M, Robineau T, Durst F, Werck-Reichhart D. (1998). Molecular cloning and functional expression in yeast of CYP76B1, a xenobiotic-inducible 7-ethoxycoumarin O-de-ethylase from Helianthus tuberosus. Plant J, 14, 111–120.
   PubMed Web of Science ®Google Scholar
• Boguski MS, Lowe TM, Tolstoshev CM. (1993). dbEST–database for “expressed sequence tags”. Nat Genet, 4, 332–333.
   PubMed Web of Science ®Google Scholar
• Bolwell GP, Bozak K, Zimmerlin A. (1994). Plant cytochrome P450. Phytochemistry, 37, 1491–1506.
   PubMed Web of Science ®Google Scholar
• Didierjean L, Gondet L, Perkins R, Lau SM, Schaller H, O’Keefe DP, Werck-Reichhart D. (2002). Engineering herbicide metabolism in tobacco and Arabidopsis with CYP76B1, a cytochrome P450 enzyme from Jerusalem artichoke. Plant Physiol, 130, 179–189.
   PubMed Web of Science ®Google Scholar
• Doty SL, James CA, Moore AL, Vajzovic A, Singleton GL, Ma C, Khan Z, Xin G, Kang JW, Park JY, Meilan R, Strauss SH, Wilkerson J, Farin F, Strand SE. (2007). Enhanced phytoremediation of volatile environmental pollutants with transgenic trees. Proc Natl Acad Sci USA, 104, 16816–16821.
   PubMed Web of Science ®Google Scholar
• Favacho AR, Kurtenbach E, Sardi SI, Gouvea VS. (2006). Cloning, expression, and purification of recombinant bovine rotavirus hemagglutinin, VP8*, in Escherichia coli. Protein Expr Purif, 46, 196–203.
   PubMed Web of Science ®Google Scholar
• Hasemann CA, Kurumbail RG, Boddupalli SS, Peterson JA, Deisenhofer J. (1995). Structure and function of cytochromes P450: A comparative analysis of three crystal structures. Structure, 3, 41–62.
   PubMed Web of Science ®Google Scholar
• Huey R, Morris GM, Olson AJ, Goodsell DS. (2007). A semiempirical free energy force field with charge-based desolvation. J Comput Chem, 28, 1145–1152.
   PubMed Web of Science ®Google Scholar
• James CA, Strand SE. (2009). Phytoremediation of small organic contaminants using transgenic plants. Curr Opin Biotechnol, 20, 237–241.
   PubMed Web of Science ®Google Scholar
• Kawahigashi H, Hirose S, Inui H, Ohkawa H, Ohkawa Y. (2005a). Enhanced herbicide cross-tolerance in transgenic rice plants co-expressing human CYP1A1, CYP2B6 and CYP2C19. Plant Sci, 168, 773–781.
   Web of Science ®Google Scholar
• Kawahigashi H, Hirose S, Ozawa K, Ido Y, Kojima M, Ohkawa H, Ohkawa Y. (2005b). Analysis of substrate specificity of pig CYP2B22 and CYP2C49 towards herbicides by transgenic rice plants. Transgenic Res, 14, 907–917.
   PubMed Web of Science ®Google Scholar
• Kim B-G, Ko JH, Hur H-G, Ahn J-H. (2004). Classification and expression analysis of cytochrome P450 genes from soybean. Agric Chem Biotechnol, 47, 173–177.
   Google Scholar
• Laskowski RA, Watson JD, Thornton JM. (2005). ProFunc: A server for predicting protein function from 3D structure. Nucleic Acids Res, 33, W89–W93.
   PubMed Web of Science ®Google Scholar
• Lee PH, Kuo KL, Chu PY, Liu EM, Lin JH. (2009). SLITHER: A web server for generating contiguous conformations of substrate molecules entering into deep active sites of proteins or migrating through channels in membrane transporters. Nucleic Acids Res, 37, W559–W564.
   Web of Science ®Google Scholar
• Mezzari MP, Walters K, Jelínkova M, Shih MC, Just CL, Schnoor JL. (2005). Gene expression and microscopic analysis of Arabidopsis exposed to chloroacetanilide herbicides and explosive compounds. A phytoremediation approach. Plant Physiol, 138, 858–869.
   PubMed Web of Science ®Google Scholar
• Morris GM, Goodsell DS, Huey R, Olson AJ. (1996). Distributed automated docking of flexible ligands to proteins: Parallel applications of AutoDock 2.4. J Comput Aided Mol Des, 10, 293–304.
   PubMed Web of Science ®Google Scholar
• Nelson DR, Kamataki T, Waxman DJ, Guengerich FP, Estabrook RW, Feyereisen R, Gonzalez FJ, Coon MJ, Gunsalus IC, Gotoh O. (1993). The P450 superfamily: Update on new sequences, gene mapping, accession numbers, early trivial names of enzymes, and nomenclature. DNA Cell Biol, 12, 1–51.
   PubMed Web of Science ®Google Scholar
• Pierrel MA, Batard Y, Kazmaier M, Mignotte-Vieux C, Durst F, Werck-Reichhart D. (1994). Catalytic properties of the plant cytochrome P450 CYP73 expressed in yeast. Substrate specificity of a cinnamate hydroxylase. Eur J Biochem, 224, 835–844.
   PubMedGoogle Scholar
• Robineau T, Batard Y, Nedelkina S, Cabello-Hurtado F, LeRet M, Sorokine O, Didierjean L, Werck-Reichhart D. (1998). The chemically inducible plant cytochrome P450 CYP76B1 actively metabolizes phenylureas and other xenobiotics. Plant Physiol, 118, 1049–1056.
   PubMed Web of Science ®Google Scholar
• Rudd S. (2003). Expressed sequence tags: Alternative or complement to whole genome sequences? Trends Plant Sci, 8, 321–329.
   PubMed Web of Science ®Google Scholar
• Schuler MA. (1996). Plant cytochrome P450 monooxygenases. Critical Reviews in Plant Sci, 15, 235–284.
   Web of Science ®Google Scholar
• Sheldon BS, Corbin FT, Dewey RE. (2000). A cytochrome P450 monooxygenase cDNA (CYP71Al0) confers resistance to linuron in transgenic Nicotiana tabacum. Weed Sci, 48, 291–295.
   Web of Science ®Google Scholar
• Siminszky B, Corbin FT, Ward ER, Fleischmann TJ, Dewey RE. (1999). Expression of a soybean cytochrome P450 monooxygenase cDNA in yeast and tobacco enhances the metabolism of phenylurea herbicides. Proc Natl Acad Sci USA, 96, 1750–1755.
   PubMed Web of Science ®Google Scholar
• Syed K, Doddapaneni H, Subramanian V, Lam YW, Yadav JS. (2010). Genome-to-function characterization of novel fungal P450 monooxygenases oxidizing polycyclic aromatic hydrocarbons (PAHs). Biochem Biophys Res Commun, 399, 492–497.
   PubMed Web of Science ®Google Scholar
• Werck-Reichhart D, Bak S, Paquette S (2002) Cytochrome P450. In The Arabidopsis Book, Somerville C, Meyerowitz (eds) American Society of Plant Biologists Available at: http://www.aspb.org/publications/arabidopsis.
   Google Scholar
• Werck-Reichhart D, Hehn A, Didierjean L. (2000). Cytochromes P450 for engineering herbicide tolerance. Trends Plant Sci, 5, 116–123.
   PubMed Web of Science ®Google Scholar
• Yamada T, Kambara Y, Imaishi H, Ohkawa H. (2000). Molecular cloning of novel cytochrome P450 species induced by chemical treatments in cultured tobacco cells. Pest Biochem Physiol, 68, 11–25.
   Web of Science ®Google Scholar
• Zhang Y. (2009). I-TASSER: Fully automated protein structure prediction in CASP8. Proteins, 77 Suppl 9, 100–113.
   PubMedGoogle Scholar
• Zhang Y, Liu J. (2011). Transgenic alfalfa plants co-expressing glutathione S-transferase (GST) and human CYP2E1 show enhanced resistance to mixed contaminates of heavy metals and organic pollutants. J Hazard Mater, 189, 357–362.
   PubMed Web of Science ®Google Scholar