Publication Cover
Mitochondrial DNA
The Journal of DNA Mapping, Sequencing, and Analysis
Volume 24, 2013 - Issue 5
155
Views
11
CrossRef citations to date
0
Altmetric
Full Length Research Paper

Genetic diversity and population structure of yellow catfish Pelteobagrus fulvidraco from five lakes in the middle and lower reaches of the Yangtze River, China, based on mitochondrial DNA control region

, , , , , & show all
Pages 552-558 | Received 04 Dec 2012, Accepted 23 Jan 2013, Published online: 06 Mar 2013

References

  • Abbas K, Zhou XY, Li Y, Gao ZX, Wang WM. 2010. Microsatellite diversity and population genetic structure of yellowcheek, Elopichthys bambusa (Cyprinidae) in the Yangtze River. Biochem Syst Ecol. 38:806–812.
  • Alvarado Bremer JR, Naseri I, Ely B. 1997. Orthodox and unorthodox phylogenetic relationships among tunas revealed by the nucleotide sequence analysis of the mitochondrial DNA control region. J of Fish Biology. 50:540–554.
  • Aris-Brosou S, Excoffier L. 1996. The impact of population expansion and mutation rate heterogeneity on DNA sequence polymorphism. Mol Biol Evol. 13:494–504.
  • Avise JC. 2000. Phylogeography: The history and formation of species. Cambridge, MA: Harvard University Press.
  • Avise JC. 2004. Molecular markers, natural history, and evolution. Sunderland, MA: Sinauer Associates.
  • Avise JC, Neigel JE, Arnold J. 1984. Demographic influences on mitochondrial DNA lineage survivorship in animal populations. Mol Evol. 20:99–105.
  • Avise JC, Bowen BW, Lamb T, Meylan AB, Bermingham E. 1992. Mitochondrial DNA evolution at a turtle's pace: Evidence for low genetic variability and reduced micro evolutionary rate in the testudines. Mol Biol Evol. 9:457–473.
  • Excoffier L, Laval G, Schneider S. 2005. ARLEQUIN version 3.0: An integrated software package for population genetics data analysis. Evol Bioinform Online. 1:47–50.
  • Fang YL, Wang DQ, Liu SP, Wu G, Miao FC, Chen DQ. 2005. Variation in mitochondrial DNA of Pelteobagrus fulvidraco from three lakes in the Middle Yangtze River. J Fish Sci China. 12 1: 56–61 (in Chinese with English abstract).
  • Fu YX. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics. 147:915–925.
  • Grant WS, Bowen BW. 1998. Shallow population histories in deep evolutionary lineages of marine fishes: Insight from sardines and anchovies and lessons for conservation. J Hered. 89:415–426.
  • Grant WS, Spies IB, Canino MF. 2006. Biogeographic evidence for selection on mitochondrial DNA in North Pacific Walleye Pollock Theragra chalcogramma. J Hered. 97:571–580.
  • Hall TA. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series.. 41:95–98.
  • Hedgecock D. 1994. Does variance in reproductive success limit effective population sizes in marine organisms?. In: Beaumont AR. editors. Genetics and evolution of aquatic organisms. London: Chapman & Hall122–134.
  • Ku XY, Zhou CJ, He SP. 2010. Validity of Pseudobagrus sinensis and mitochondrial DNA diversity of Pseudobagrus fulvidraco populations in China. Biodiversity Science. 18 3: 262–274.
  • Lee OK, Lee SM. 2005. Effects of the dietary protein and lipid levels on growth and body composition of bagrid catfish, Pseudobagrus fulvidraco. Aquaculture. 243:323–329.
  • Liang HW, Hu GF, Li Z, Zou GW, Liu XL. 2012. Mitochondrial DNA sequence of yellow catfish (Pelteobagrus fulvidraco). Mitochondrial DNA. 23:170–172.
  • Nei M. 1987. Molecular evolution genetics. New York: Columbia University Press.
  • Nei M, Li WH. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA. 76:5269–5273.
  • Rodrigues R, Schneider H, Santos S, Vallinoto M, Sain-Paul U, Sampaio I. 2008. Low levels of genetic diversity depicted from mitochondrial DNA sequences in a heavily exploited marine fish (Cynoscion acoupa, Sciaenidae) from the northern coast of Brazil. Genet Mol Biol. 31:487–492.
  • Rohl A. 2003. Network: A program package for calculating phylogenetic networks, version 4.6. Hamburg, Germany: Fluxus Technology Ltd.
  • Rozas J, Sanchez-Del Barrio JC, Messeguer X, Rozas R. 2003. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics. 19:2496–2497.
  • Sambrook J, Russell DW. 2001. Molecular cloning: A laboratory manual. New York: Cold Spring Harbor Laboratory Press.
  • Santos BS, Quilang JP. 2011. Genetic diversity analysis of Arius manillensis (Siluriformes: Ariidae) using the mitochondrial control region. Mitochondrial DNA. 23:45–52.
  • Tajima F. 1983. Evolutionary relationship of DNA sequences in finite populations. Genetics. 105:437–460.
  • Tajima F. 1989. Statistical-method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics. 123:585–595.
  • Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol. 24:1596–1599.
  • Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research. 22:4673–4680.
  • Wang CY, Yu XM, Tong JG. 2007. Microsatellite diversity and population genetic structure of redfin culter (Culter erythropterus) in fragmented lakes of the Yangtze River. Hydrobiologia. 586:321–329.
  • Xiao YS, Zhang Y, Gao TX, Yanagimoto T, Yabe M, Sakurai Y. 2009. Genetic diversity in the mitochondrial DNA control region and population structure in the small yellow croaker Larimichthys polyactis. Environ Biol Fish. 85:303–314.
  • Yamaguchi K, Nakajima M, Taniguchi N. 2010. Loss of genetic variation and increased population differentiation in geographically peripheral populations of Japanese char Salvelinus leucomaenis. Aquaculture. 308:S20–S27.
  • Yuan XP, Wu YA, Hong B, Wang DQ, Liu SP, Chen DQ. 2011. Mitochondrial DNA diversity of Glyptothorax zanaensis (Wu et al., 1981) populations in Nu River. China. Environ Biol Fish. 93:137–142.
  • Zhao J, Cao Y, Li SF, Li JL, Deng YF, Lu GQ. 2011. Population genetic structure and evolutionary history of grass carp Ctenopharyngodon idella in the Yangtze River. China. Environ Biol Fish. 90:85–93.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.