Publication Cover
Mitochondrial DNA
The Journal of DNA Mapping, Sequencing, and Analysis
Volume 25, 2014 - Issue 6
230
Views
11
CrossRef citations to date
0
Altmetric
Full length Research Papers

Phylogeny of Trachylepis sp. (Reptilia) from Turkey inferred from mtDNA sequences

, , , , , & show all
Pages 456-463 | Received 18 Apr 2013, Accepted 07 Jun 2013, Published online: 05 Sep 2013

References

  • Ahmadzadeh F, Carretero MA, Harris DJ, Perera A, Böhme W. (2012). A molecular phylogeny of the eastern group of ocellated lizard genus Timon (Sauria: Lacertidae) based on mitochondrial and nuclear DNA sequences. Amphibia--Reptilia 33:1–10
  • Afsar M, Tok CV. (2011). The herpetofauna of the Sultan mountains (Afyon-Konya-Isparta)-Turkey. Turk J Zool 35:491–501
  • Akaike H. (1974). A new look at the statistical model ıdentification. IEEE Trans Automatic Control AC 19:716–23
  • Baran İ. (1977). Türkiye’de Scincidae familyası türlerinin taksonomisi [Taxonomy of the Scincidae species in Turkey]. Doğa Bilim Dergisi, Ankara 1:217–23
  • Bauer AM. (1992). Echsen. In: Cogger HG, Zweifel RG, editors. Reptilien & Amphibien. Hamburg: Jahr-Verlag. p 126–74
  • Bauer AM. (2003). On the identity of Lacerta punctata Linnaeus, 1758, the type species of the genus Euprepis Wagler, 1830, and the generic assignment of Afro-Malagasy skinks. Afr J Herpetol, Bloemfontein 52:1–7
  • Bird CG. (1936). The distribution of reptiles and amphibians in Asiatic Turkey with notes on a collection from the Vilayets of Adana, Gaziantep and Malatya. Ann Mag Hist London 10:257–81
  • Bodenheimer S. (1944). Introduction into the knowledge of the Amphibia and Reptila of Turkey. İstanbul Üniv Fen Fak Mecm Ser B 9:1–78
  • Budak A. (1973). Türkiye’de Mabuya vittata (Scincidae, Lacertilia)’nın bireysel ve coğrafik variasyonu üzerinde çalışmalar. Ege Üniv Fen Fak İlmi Rap Ser 162:1–25
  • Carranza S, Arnold EN. (2003). Investigating the origin of transoceanic distributions: mtDNA shows Mabuya lizards (Reptilia, Scincidae) crossed the Atlantic twice. Syst Biodiv 1:275–82
  • Drummond AJ, Rambaut A. (2007). BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7:214--21
  • Durmuş SH, Kumlutaş Y, Özdemir A, Avcı A, Ilgaz Ç. (2011). Morphology, taxonomic status and distribution of Trachylepis aurata (Linneaus, 1758) in southeast Anatolia (Squamata: Sauria: Scincidae). Herpetozoa 24:61–71
  • Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0. Syst Biol 59:307–21
  • Hall TA. (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–8
  • Huelsenbeck JP, Ronquist F. (2001). MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17:754–5
  • Irwin DM, Kocher TD, Wilson AC. (1991). Evolution of the cytochrome b gene of mammals. J Mol Evol 32:128–44
  • Jesus J, Brehm A, Harris DJ. (2005). Relationships of scincid lizards (Mabuya spp.) from the islands of the Gulf of Guinea based on mtDNA sequence data. Amphibia--Reptilia 26:467–73
  • Kapli P, Botoni D, Ilgaz Ç, Kumlutas Y, Avcı A, Rastegar-Pouyani N, Fathinia B, et al. (2013). Molecular phylogeny and historical biogeography of the Anatolian lizard Apathya (Squamata, Lacertidae). Mol Phyl Evol 66:992–1001
  • Kapli P, Lymberakis P, Poulakakis N, Mantziou G, Parmakelis A, Mylonas M. (2008). Molecular phylogeny of three Mesalina (Reptilia: Lacertidae) species (M. guttulata. M. brevirostris and M. bahaeldini) from North Africa and the Middle East: Another case of paraphyly? Mol Phyl Evol 49:102–10
  • Kocher TD, Thomas WK, Meyer A, Edwards SV, Paabo S, Villablanca FX, Wilson AC. (1989). Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers. Proc Natl Acad Sci 86:6196–200
  • Kornilios P, Ilgaz Ç, Kumlutaş Y, Giokas S, Fraguedakis-Tsolis S, Chondropoulos B. (2011). The role of Anatolian refugia in herpetofaunal diversity: An mtDNA analysis of Typhlops vermicularis Merrem, 1820 (Squamata, Typhlopidae). Amphibia--Reptilia 32:351–63
  • Kornilios P, Ilgaz Ç, Kumlutas¸ Y, Lymberakis P, Moravec J, Sindaco R, Rastegar-Pouyan N, et al. (2012). Neogene climatic oscillations shape the biogeography and evolutionary history of the Eurasian blindsnake. Mol Phyl Evol 62:856–73
  • Kyriazi P, Poulakakis N, Parmakelis A, Crochet PA, Moravec J, Rastegar-Pouyani N, Tsigenopoulos CS, et al. (2008). Mitochondrial DNA reveals the genealogical history of the snake-eyed lizards (Ophisops elegans and O. occidentalis) (Sauria: Lacertidae). Mol Phyl Evol 49:795–805
  • Kumlutaş Y, Öz M, Durmuş H, Tunç MR, Özdemir A, Düşen S. (2004). On some lizard species of the western Taurus range. Tr J Zool 28:225–36
  • Linkem CW, Diesmos AC, Brown RM. (2011). Molecular systematics of the Philippine forest skinks (Squamata: Scincidae: Sphenomorphus): Testing morphological hypotheses of interspecific relationships. Zool J Linn Soc 163:1217–43
  • Linnaeus C. (1758). Caroli linnæi Systema naturæ per regna tria naturæ, secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis. Vol. 1. (10th ed.). Holmia [Stockholm] (l. Salvius). p V, 823
  • Mausfeld P, Lötters S. (2001). Systematics of Mabuya frenata cochabambae Dunn, 1935 (Reptilia, Sauria, Scincidae) from Inner-Andean dry valleys of Bolivia. Studies Neotrop Fauna Environ 36:49–55
  • Mausfeld, P, Schmitz A, Bohme W, Misof B, Vrcibradic D, Rocha CFD. (2002). Phylogenetic affinities of Mabuya atlantica Schmidt, 1945, endemic to the Atlantic Ocean Archipelago of Fernando de Noronha (Brazil): Necessity of partitioning the genus Mabuya Fitzinger, 1826 (Scincidae: Lygosominae). Zoologischer Anzeiger, London, New York, Oxford, Paris, München etc. 241:281–93
  • Mausfeld P, Schmitz A. (2003). Molecular phylogeography, intraspecific variation and speciation of the Asian scincid lizard genus Eutropis Fitzinger, 1843 (Squamata: Reptilia: Scincidae): Taxonomic and biogeographic implications. Org Diver Evol 3:161–71
  • Mertens R. (1924). Amphibien und Reptilien aus dem nördlichen Mesopotamien.- Abhandlungen und Berichte aus dem Museum für Natur- und Heimat - kunde und dem Naturwissenschaftlichen Verein in Magdeburg, Magdeburg 3:376–80
  • Mertens R. (1952). Amphibien und Reptilien aus der Türkei.- İstanbul Üniv Fen Fak Mecm Ser B 17:41–75
  • Miralles A, Carranza S. (2010). Systematics and biogeography of the Neotropical genus Mabuya, with special emphasis on the Amazonian skink Mabuya nigropunctata (Reptilia, Scincidae). Mol Phyl Evol 54:857–69
  • Miralles A, Rivas FG, Bonillo C, Schargel WE, Barros T, García-Perez JE, Barrio-Amorós CL. (2009). Molecular systematics of Caribbean skinks of the genus Mabuya (Reptilia, Scincidae), with descriptions of two new species from Venezuela. Zool J Linn Soc 156:598–616
  • Moravec J, Franzen M, Bohme W. (2006). Notes on the taxonomy, nomenclature and distribution of the Trachylepis (formerly Mabuya. aurata (Linnaeus, 1758) complex. In: Vences M, Kohler J, Ziegler T, Bohme W, editors. Herpetologia Bonnensis II. Proceedings of the 13th Congress of the Societas Europaea Herpetologica, Bonn, Zoologisches Forschungsmuseum A. Koenig and Societas Europaea Herpetologica. p 89–93
  • Olivier GA. (1804). Voyage dans l’Empire Othoman, L’Egypte et la Perse. Agasse, Paris 4
  • Özdemir A, Durmuş SH, Kete R, Yılmaz İ. (2001). Hatay ve Gaziantep Mabuya vittata Olivier 1804 (Lacertilia: Scincidae) Örnekleri Üzerinde Bir Araştırma. Anadolu Üniversitesi Bilim ve Teknoloji Derg 2:271–5
  • Posada D. (2008). jModelTest: Phylogenetic model averaging. Mol Biol Evol 25:1253
  • Rambaut A. (2006–2009). Fig Tree. Tree Figure Drawing Tool, Version 1.2.2. Available at: http://tree.bio.ed.ac.uk/software/figtree/ (Accessed 1 February 2013)
  • Rambaut A, Drummond AJ. (2007). Tracer v.1.5.0 Computer program and documentation distributed by the authors. Available at: http://beast.bio.ed.ac.uk/Tracer (Accessed 1 February 2013)
  • Rastegar-Pouyani N. (2006). Intra- and interspecific-geographic variation in the Iranian scincid lizards of the genus Trachylepis Fitzinger, 1843 (Sauria: Scincidae). Iranian J Animal Biosys 2:1–11
  • Robertson KM, LeDuc CA, LeDuc RG, Morin PA. (2007). Extraction of DNA from formalin-fixed cetacean tissues. NOAA Technical Memorandum NMFS SWFSC 400
  • Rozas J, Sanchez-DelBarrio JC, Messeguer X, Rozas R. (2003). DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19:2496–7
  • Shedlock AM, Haygood, MG, Pietsch TW, Bentzen P. (1997). Enhanced DNA extraction and PCR amplification of mitochondrial genes from formalin-fixed museum specimens. BioTechniques 22:394–400
  • Sindaco R, Metallinou M, Pupin F, Fasola M, Carranza S. (2012). Forgotten in the ocean: Systematics, biogeography and evolution of the Trachylepis skinks of the Socotra Archipelago. Zool Scripta. The Norwegian Acad Sci Lett 41:346–62
  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. (2011). MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Bio Evol 28:2731–9
  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. (1997). The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–82
  • Tok CV. (1999). Reşadiye (Datça) yarımadası kertenkeleleri hakkında (Gekkonidae, Agamidae, Chamaeleonidae, Lacertidae, Scincidae, Amphisbaenidae), [On lizard species of Datça (Gekkonidae, Agamidae, Chamaeleonidae, Lacertidae, Scincidae, Amphisbaenidae)]. Tr J Zool 23:157–75
  • Tok CV, Göçmen B, Mermer A. (1999). Kuzey Kıbrıs Türk Cumhuriyeti Mabuya vittata (Seritli kertenkele) (Sauria: Scincidae) Örnekleri Hakkında. Tr J Zool 23:583–9
  • Vrcibradic D, Mausfeld P, Rocha CFD. (2003). Molecular systematics of Brazilian Mabuya (Reptilia, Squamata, Scincidae) of the agilis.caissara.heathi complex. Copeia
  • Werner F. (1898). Vorläufige Mitteilung über die von Herrn Prof. F. Dahl im Bismarck- Archipel gesammelten Reptilien und Batrachier. Zool Anz 21:552–6
  • Werner F. (1902). Die Reptilien- und Amphibienfauna von Kleinasien. In: Sitzungsberichte der Kaiserlichen Academie der Wissenschaften in Wien, mathematische und naturwissenschaftliche Classe (Abt. I). 111:1057–121
  • Whiting AS, Sites JWJ, Pellegrino KCM, Rodrigues MT. (2006). Comparing alignment methods for inferring the history of the new world lizard genus Mabuya (Squamata: Scincidae). Mol Phyl Evol 38:719–30
  • Yang Z. (2006). Computational molecular evolution. Oxford, New York: Oxford University Press
  • Yılmaz İ. (1977). Mabuya aurata (Scincidae, Lacertilia)‘nın Anadolu’da subspesifik durumu [Sub-specific status of Mabuya aurata (Scincidae, Lacertilia) in Anatolia]. Ege Üniv Fen Fak Der B 1:111–37

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.