Advanced search
Publication Cover
Mitochondrial DNA Part A
DNA Mapping, Sequencing, and Analysis
Volume 27, 2016 - Issue 1
Submit an article Journal homepage
104
Views
5
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

The complete mitochondrial genome of the southern purple-spotted gudgeon Mogurnda adspersa (Perciformes: Eleotridae) through pyrosequencing

Violeta da Rocha PeriniMultidisciplinary Laboratory for Data Analysis, Instituto de Bioquímica Médica Leopoldo de Meis, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil, Correspondence[email protected]
,
Daniel Cardoso de CarvalhoConservation Genetics Lab, Postgraduate Studies in Zoology, Pontifical Catholic University of Minas Gerais, PUC, Minas. Av. Dom José Gaspar, Coração Eucarístico, CEP, Belo Horizonte, Minas Gerais, Brazil, and ;Molecular Ecology Laboratory, School of Biological Sciences, Flinders University, Adelaide, SA, Australia
,
Luciano Bellagamba BeheregarayMolecular Ecology Laboratory, School of Biological Sciences, Flinders University, Adelaide, SA, Australia
&
Francisco ProsdocimiMultidisciplinary Laboratory for Data Analysis, Instituto de Bioquímica Médica Leopoldo de Meis, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil,
Pages 380-382 | Received 28 Jan 2014, Accepted 16 Feb 2014, Published online: 24 Mar 2014

References

  • Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. (1997). Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucl Acids Res 25:3389–402
  • Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, et al. (2013). MITOS: Improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol 69:313–19
  • Carver T, Harris SR, Berriman M, Parkhill J, McQuillan JA. (2012). Artemis: An integrated platform for visualization and analysis of high-throughput sequence-based experimental data. Bioinformatics 28:464–9
  • Chevreux B, Wetter T, Suhai S. (1999). Genome sequence assembly using trace signals and additional sequence information. Computer Science and Biology: Proc German Conf Bioinform 99:45–56
  • Faulks LK, Gilligan DM, Beheregaray LB. (2008). Phylogeography of a threatened freshwater fish (Mogurnda adspersa) in Eastern Australia: Conservation implications. Mar Freshw Res 59:89–96
  • Hammer MP, Bice CM, Hall A, Frears A, Watt A, Whiterod NS, Beheregaray LB, et al. (2013). Freshwater fish conservation in the face of critical water shortages in the southern Murray–Darling Basin, Australia. Mar Freshwater Res 64:807–21
  • Hahn C, Bachmann L, Chevreux B. (2013). Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads – A baiting and iterative mapping approach. Nucleic Acids Res 41:1–9
  • Iwasaki W, Fukunaga T, Isagozawa R, Yamada K, Maeda Y, Satoh TP, Sado T, et al. (2013). MitoFish and MitoAnnotator: A mitochondrial genome database of fish with an accurate and automatic annotation pipeline. Mol Biol Evol 30:2531–40
  • Lowe TM, Eddy SR. (1997). tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25:0955–64
  • Mardis E. (2008). The impact of next-generation sequencing technology on genetics. Trends Genet 24:133–41
  • Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, et al. (2005). Genome sequencing in microfabricated high-density picolitre reactors. Nature 437:376–80
  • Milne I, Stephen G, Bayer M, Cock PJA, Pritchard L, Cardle L, Shaw PD, Marshall D. (2013). Using Tablet for visual exploration of second-generation sequencing data. Brief Bioinform 14:193–202
  • Pertea G, Huang X, Liang F, Antonescu V, Sultana R, Karamycheva S, Lee Y, et al. (2003). TIGR gene indices clustering tools (TGICL): A software system for fast clustering of large EST datasets. Bioinformatics 19:651–2
  • Prosdocimi F, Carvalho DC, Almeida RN, Beheregaray LB. (2012). The complete mitochondrial genome of two recently derived species of the fish genus Nannoperca (Perciformes, Percichthyidae). Mol Biol Rep 39:2767–72
  • Song HY, Satoh TP, Mabuchi K. (2012). Complete mitochondrial genome sequence of the dragonet Callionymus curvicornis (Perciformes: Callionymoidei: Callionymidae). Mitochondrial DNA 23:290–2
  • Sunnucks P, Hales D. (1996). Numerous transposed sequences of mitochondrial cytochrome oxidase I–II in aphids of the genus Sitobion (Hemiptera: aphididae). Mol Biol Evol 13:510–24
  • Zhang Z, Zhao L, Song N, Gao T. (2013). The complete mitochondrial genome of Johnius grypotus (Perciformes: Sciaenidae). Mitochondrial DNA 24:504–6

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Order Reprints Request Corporate Permissions

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

Request Academic Permissions

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.