References
- Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, et al. (2013). MITOS: Improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol 69:313–19
- Besnard G, Christin PA, Malé P-J, Coissac E, Ralimanana H, Vorontsova MS. (2013). Phylogenomics and taxonomy of Lecomtelleae (Poaceae), an isolated panicoid lineage from Madagascar. Ann Bot 112:1057–66
- Besnard G, Jühling F, Chapuis E, Zedane L, Lhuillier E, Mateille T, Bellafiore S. (2014). Fast assembly of the mitochondrial genome of a plant parasitic nematode (Meloidogyne graminicola) using next generation sequencing. C. R. Biologies 337:295–301
- Cameron SL, Whiting MF. (2008). The complete mitochondrial genome of the tabacco hornworm, Manduca sexta, (Insecta: Lepidoptera: Sphingidae), and an examination of mitochondrial gene variability within butterflies and moths. Gene 408:112–23
- Garzón-Orduña IJ. (2012). Phylogenetic evidence for loss of sound production and a shift in sexual recognition signals in Hamadryas butterflies (Nymphalidae: Biblidinae). Syst Entomol 37:84–101
- Garzón-Orduña IJ, Marini-Filho O, Johnson SG, Penz CM. (2013). Phylogenetic relationships of Hamadryas (Nymphalidae: Biblidinae) based on the combined analysis of morphological and molecular data. Cladistics 29:629–42
- Jühling F, Pütz J, Bernt M, Donath A, Middendorf M, Florentz C, Stadler PF. (2012). Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements. Nucleic Acids Res 40:2833–45
- Malé PJG, Bardon L, Besnard G, Coissac E, Delsuc F, Engel J, Luillier E, et al. (2014). Genome skimming by shotgun sequencing helps resolve the phylogeny of a pantropical tree family. Mol Ecol Resour 14:966–75
- Mariette J, Escudié F, Allias N, Salin G, Noirot C, Thomas S, Klopp C. (2012). NG6: Integrated next generation sequencing storage and processing environment. BMC Genomics 13:462
- Ojala D, Montoya J, Attardi G. (1981). tRNA puncuation model of RNA processing in human mitochondria. Nature 290:470–4
- Timmermans MJTN, Lees D, Simonsen TJ. (2014). Towards a mitogenomic phylogeny of Lepidoptera. Mol Phylogenet Evol 79:169–78
- Wahlberg N, Leneveu J, Kodandaramaiah U, Peñas J, Nylin S, Freitas AVL, Brower AVZ. (2009). Nymphalid butterflies diversify following near demise at the cretaceous/tertiary boundary. Proc R Soc B 276:4295–302
- Wu LW, Lin L-H, Lees D, Hsu Y-F. (2014). Mitogenomic sequences effectively recover relationships within brush-footed butterflies (Lepidoptera: Nymphalidae). BMC Genomics 15:468