DNA barcoding of true limpets (Order Patellogastropoda) along coast of China: a case study

References

• Branch GM. (1985). Limpets: Evolution and adaptation. In: Trueman ER, Clarke MR, editors. The Mollusca. Vol. 10. Evolution. New York: Academic Press. p 187–220
   Google Scholar
• Collin R. (2003). Phylogenetic relationships among calyptraeid gastropods and their implications for the biogeography of marine speciation. Syst Biol 52:618–40
   PubMed Web of Science ®Google Scholar
• Costello MJ, Bouchet P, Boxshall G, Fauchald K, Gordon D, Hoeksema BW, Poore GC, et al. (2013). Global coordination and standardisation in marine biodiversity through the World Register of Marine Species (WoRMS) and related databases. PLoS One 8:e51629
   PubMed Web of Science ®Google Scholar
• Darriba D, Taboada GL, Doallo R, Posada D. (2012). jModelTest 2: More models, new heuristics and parallel computing. Nat Methods 9:772
   PubMed Web of Science ®Google Scholar
• Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R. (1994). DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mar Biol Biotechnol 3:294–9
   PubMedGoogle Scholar
• Geller J, Meyer C, Parker M, Hawk H. (2013). Redesign of PCR primers for mitochondrial cytochrome c oxidase subunit I for marine invertebrates and application in all-taxa biotic surveys. Mol Ecol Resour 13:851–61
   PubMed Web of Science ®Google Scholar
• Guindon S, Gascuel O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696–704
   PubMed Web of Science ®Google Scholar
• Hall TA. (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95 / 98 / NT. Nucleic Acids Symp Ser 41:95–8
   Google Scholar
• Hebert PDN, Cywinska A, Ball SL, deWaard JR. (2003). Biological identifications through DNA barcodes. Proc R Soc Lond B Biol Sci 270:96–9
   PubMed Web of Science ®Google Scholar
• Hebert PDN, Stoeckle MY, Zemlak TS, Francis CM. (2004). Identification of bird through DNA barcodes. PLoS Biol 2:1657–63
   Web of Science ®Google Scholar
• Holmes BH, Steinke D, Ward RD. (2009). Identification of shark and ray fins using DNA barcoding. Fish Res 95:280–8
   Web of Science ®Google Scholar
• Huang ZG, Lin M. (2012). The living species and their illustrations in China’s seas. Beijing, China: Ocean Press
   Google Scholar
• Kelly RP, Sarkar IN, Eernisse DJ, Desalle ROB. (2007). DNA barcoding using chitons (genus Mopalia). Mol Ecol Notes 7:177–83
   Web of Science ®Google Scholar
• Kimura M. (1980). A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–20
   PubMed Web of Science ®Google Scholar
• Layton KKS, Martel AL, Hebert PDN. (2014). Patterns of DNA barcode variation in Canadian marine molluscs. PLoS One 9:e95003
   PubMed Web of Science ®Google Scholar
• Maas AE, Blanco-Bercial L, Lawson GL. (2013). Reexamination of the species assignment of Diacavolinia pteropods using DNA barcoding. PLoS One 8:e53889
   PubMed Web of Science ®Google Scholar
• Maddison DR, Maddison WP. (2005). MacClade v. 4.08. Mishawaka, IN: Sinauer Associates
   Google Scholar
• Mauro A, Arculeo M, Parrinello N. (2003). Morphological and molecular tools in identifying the mediterranean limpets Patella caerulea, Patella aspera and Patella rustica. J Exp Mar Biol Ecol 295:131–43
   Web of Science ®Google Scholar
• Meier R, Zhang GY, Ali F. (2008). The use of mean instead of smallest interspecific distances exaggerates the size of the “barcoding gap” and leads to misidentification. Syst Biol 57:809–13
   PubMed Web of Science ®Google Scholar
• Meyer CP, Paulay G. (2005). DNA barcoding: Error rates based comprehensive sampling. PLoS Biol 3:2229–38
   Web of Science ®Google Scholar
• Mikkelsen NT, Schander C, Willassen E. (2007). Local scale DNA barcoding of bivalves (Mollusca): A case study. Zool Scr 36:455–63
   Web of Science ®Google Scholar
• Okutani T. (2000). Marine mollusks in Japan. Tokyo, Japan: Tokai University Press
   Google Scholar
• Remigio EA, Hebert PDN. (2003). Testing the utility of partial COI sequences for phylogenetic estimates of gastropod relationships. Mol Phylo Evol 29:641–7
   PubMed Web of Science ®Google Scholar
• Rivera J, Currie DC. (2009). Identification of Nearctic black flies using DNA barcodes (Diptera: Simuliidae). Mol Ecol Resour 9:224–36
   PubMed Web of Science ®Google Scholar
• Ronquist F, Huelsenbeck JP. (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–4
   PubMed Web of Science ®Google Scholar
• Sarkar IN, Planet PJ, Desalle ROB. (2008). Caos software for use in character-based DNA barcoding. Mol Ecol Resour 8:1256–9
   PubMed Web of Science ®Google Scholar
• Sun Y, Li Q, Kong LF, Zheng XD. (2012). DNA barcoding of Caenogastropoda along coast of China based on the COI gene. Mol Ecol Resour 12:209–18
   PubMed Web of Science ®Google Scholar
• Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. (2013). MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–9
   PubMed Web of Science ®Google Scholar
• Thompson JD, Higgins DG, Gibson TJ. (1994). CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–80
   PubMed Web of Science ®Google Scholar
• Wang ZZ, Wu CW, Liu ZY. (2001). Preliminary study on the ecologicals, habit and characteristics of Cellana toreuma (Reeve) in the North of Zhejiang Coastal Area. J Zhejiang Ocean Univ (Natural Science) 20:7–13
   Google Scholar
• Winnepenninckx B, Backeljau T, De Wachter R. (1993). Extraction of high molecular weight DNA from molluscs. Trends Genet 9:407
   PubMed Web of Science ®Google Scholar
• Zhang SP. (2008). Atlas of marine mollusks in China. Beijing, China: Ocean Press
   Google Scholar