Nitrogen-15 Chemical Shifts in AT (Adenine-Thymine) and CG (Cytosine-Guanine) Nucleic Acid Base Pairs

Abstract

This paper presents ab initio (DFT) calculations of the ¹⁵N chemical shifts in AT (Adenine- Thymine) and CG (Cytosine-Guanine) nucleic acid base pairs. Calculations were done on 14 AT and 18 CG base pairs using experimental (X-ray) geometries obtained from several DNA decamers. The calculated chemical shifts are compared with the experimental values in the pure bases and subjected to statistical analysis to explore their sensitivity to the local geometry and pair helix parameters. The results indicate that the ¹⁵N chemical shifts, isotropic and principal components are quite sensitive to small changes in the geometry of the pairs, but they do not correlate well with the helix pair parameters. From the statistical analysis, several linear correlations between structural parameters and chemical shifts emerge. These relationships may serve as a foundation to extract information on molecular structure from ¹⁵N chemical shift measurements.