Journal of Biomolecular Structure and Dynamics, Volume 16, Issue 3 (1998)

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Journal of Biomolecular Structure and Dynamics, Volume 16, Issue 3 (1998)

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Miscellany

Eleventh Conversation in the Discipline Biomolecular Stereodynamics University at Albany, SUNY, Albany, New York, June 15–19, 1999
Pages: xiii-xiv
Published online: 21 May 2012
CitationforEleventh Conversation in the Discipline Biomolecular Stereodynamics University at Albany, SUNY, Albany, New York, June 15–19, 1999 | PDF (182 KB)
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Original Articles

Article
Molecular Dynamic Simulations of Environment and Sequence Dependent DNA Conformations: The Development of the BMS Nucleic Acid Force Field and Comparison with Experimental Results
David R. Langley
Pages: 487-509
Published online: 21 May 2012
AbstractforMolecular Dynamic Simulations of Environment and Sequence Dependent DNA Conformations: The Development of the BMS Nucleic Acid Force Field and Comparison with Experimental Results | References | PDF (2.8 MB)
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Article
Molecular Dynamics Simulations on Parallel and Antiparallel C.G*G Triplexes
M. Ravi Kiran & Manju Bansal
Pages: 511-526
Published online: 21 May 2012
AbstractforMolecular Dynamics Simulations on Parallel and Antiparallel C.G*G Triplexes | References | PDF (1.3 MB)
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Article
Molecular Mechanics Calculations on a Triple Stranded DNA Involving C+.G-T and T.A+-C Mismatched Base Triples
Sukesh R. Bhaumik, Kandala V.R. Chary & Girjesh Govil
Pages: 527-534
Published online: 21 May 2012
AbstractforMolecular Mechanics Calculations on a Triple Stranded DNA Involving C+.G-T and T.A+-C Mismatched Base Triples | References | PDF (837.1 KB)
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Article
A Model for Parallel Triple Helix Formation by Ree A: Single-Strand Association with a Homologous Duple via the Minor Groove
Guillaume Bertucat, Richard Lavery & Chantal Prèvost
Pages: 535-546
Published online: 21 May 2012
AbstractforA Model for Parallel Triple Helix Formation by Ree A: Single-Strand Association with a Homologous Duple via the Minor Groove | References | PDF (717.3 KB)
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Article
The Solution Conformation of a Carbocyclic Analog of the Dickerson-Drew Dodecamer: Comparison with its own X-ray Structure and that of the NMR Structure of the Native Counterpart
Aleksej Yu. Denisov, E. V. Zamaratski, Tatiana V. Maltseva, Anders Sandström, Somer Bekiroglu, Karl-Heinz Altmann, Martin Egli & Jyoti Chattopadhyaya
Pages: 547-568
Published online: 21 May 2012
AbstractforThe Solution Conformation of a Carbocyclic Analog of the Dickerson-Drew Dodecamer: Comparison with its own X-ray Structure and that of the NMR Structure of the Native Counterpart | References | PDF (1.8 MB)
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Article
The Residence Time of the Bound Water in the Hydrophobic Minor Groove of the Carbocyclic-Nucleoside Analogs of Dickerson-Drew Dodecamers
T. V. Maltseva, K.-H. Altmann, M. Egli & J. Chattopadhyaya
Pages: 569-578
Published online: 21 May 2012
AbstractforThe Residence Time of the Bound Water in the Hydrophobic Minor Groove of the Carbocyclic-Nucleoside Analogs of Dickerson-Drew Dodecamers | References | PDF (644.4 KB)
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Article
Molecular Dynamics Simulations of DNA in Solution with Different Counter-ions
A. P. Lyubartsev & A. Laaksonen
Pages: 579-592
Published online: 21 May 2012
AbstractforMolecular Dynamics Simulations of DNA in Solution with Different Counter-ions | References | PDF (1.1 MB)
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Article
Modeling the Mechanics of a DNA Oligomer
Anne Lebrun & Richard Lavery
Pages: 593-604
Published online: 21 May 2012
AbstractforModeling the Mechanics of a DNA Oligomer | References | PDF (842.2 KB)
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Article
DNA Curvature and Phosphate Neutralization: An Important Aspect of Specific Protein Binding
Raphael Gurlie & Krystyna Zakrzewska
Pages: 605-618
Published online: 21 May 2012
AbstractforDNA Curvature and Phosphate Neutralization: An Important Aspect of Specific Protein Binding | References | PDF (1.2 MB)
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Article
Nitrogen-15 Chemical Shifts in AT (Adenine-Thymine) and CG (Cytosine-Guanine) Nucleic Acid Base Pairs
Julio C. Facelli
Pages: 619-629
Published online: 21 May 2012
AbstractforNitrogen-15 Chemical Shifts in AT (Adenine-Thymine) and CG (Cytosine-Guanine) Nucleic Acid Base Pairs | References | PDF (508.2 KB)
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Article
Sequence-Dependent Binding of Metal Ion to DNA Oligomeres. A Comparison of Molecular Electrostatic Potentials with NMR Data
Michael Montrel, Vasily P. Chuprina, Valery I. Poltev, Willy Nerdal & Einar Sletten
Pages: 631-637
Published online: 21 May 2012
AbstractforSequence-Dependent Binding of Metal Ion to DNA Oligomeres. A Comparison of Molecular Electrostatic Potentials with NMR Data | References | PDF (1,018.6 KB)
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Article
An NMR Study of d(CTACTGCTTTAG).d(CTAAAGCAGTAG) Showing Hydration Water Molecules in the Minor Groove of a TpA Step
S. Leporc, O. Mauffret, S. El Antri, O. Convert, E. Lescot, G. Tevanian & S. Fermandjian
Pages: 639-649
Published online: 21 May 2012
AbstractforAn NMR Study of d(CTACTGCTTTAG).d(CTAAAGCAGTAG) Showing Hydration Water Molecules in the Minor Groove of a TpA Step | References | PDF (546 KB)
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Article
The Biological Implications of Damage to DNA Incorporating an 8-Oxodeoxyguanine:Cytosine Basepair
Alex Ninaber & Julia M. Goodfellow
Pages: 651-661
Published online: 21 May 2012
AbstractforThe Biological Implications of Damage to DNA Incorporating an 8-Oxodeoxyguanine:Cytosine Basepair | References | PDF (492.4 KB)
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Article
Terminal Twist Induced Continuous Writhe of A Circular Rod with Intrinsic Curvature
Hong Qian & James H. White
Pages: 663-669
Published online: 21 May 2012
AbstractforTerminal Twist Induced Continuous Writhe of A Circular Rod with Intrinsic Curvature | References | PDF (289.8 KB)
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Article
Continuum Solvent Studies of the Stability of RNA Hairpin Loops and Helices
Jayashree Srinivasan, Jennifer Miller, Peter A. Kollman & David A. Case
Pages: 671-682
Published online: 21 May 2012
AbstractforContinuum Solvent Studies of the Stability of RNA Hairpin Loops and Helices | References | PDF (762.1 KB)
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Article
Structural Model of the HIV-1 Tat(46–58)-TAR Complex
Michael J. Seewald, Armin U. Metzger, Dieter Willbold, Paul Rösch & Heinrich Sticht
Pages: 683-692
Published online: 21 May 2012
AbstractforStructural Model of the HIV-1 Tat(46–58)-TAR Complex | References | PDF (908.3 KB)
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Article
Hydration of RNA Base Pairs
Pascal Auffinger & Eric Westhof
Pages: 693-707
Published online: 21 May 2012
AbstractforHydration of RNA Base Pairs | References | PDF (961.4 KB)
  • 89 Views
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Article
To Knot or Not to Knot? Examination of 16S Ribosomal RNA Models
Margaret S. VanLoock, Brett A. Harris & Stephen C. Harvey
Pages: 709-713
Published online: 21 May 2012
AbstractforTo Knot or Not to Knot? Examination of 16S Ribosomal RNA Models | References | PDF (309.2 KB)
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Article
Modeling of Angiogenin - 3′-NMP Complex
M. S. Madhusudhan & Saraswathi Vishveshwara
Pages: 715-722
Published online: 21 May 2012
AbstractforModeling of Angiogenin - 3′-NMP Complex | References | PDF (810.7 KB)
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Article
Computer Simulation Studies of the Fully Solvated Wild-type and Mutated GnRH in Extended and βturn Conformations
Mihaly Mezei & Frank Guarnieri
Pages: 723-732
Published online: 21 May 2012
AbstractforComputer Simulation Studies of the Fully Solvated Wild-type and Mutated GnRH in Extended and βturn Conformations | References | PDF (626.6 KB)
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Article
Brownian and Essential Dynamics Studies of the HIV-1 Integrase Catalytic Domain
Wolfgang Weber, Hagop Demirdjian, Roberto D. Lins, James M. Briggs, Ricardo Ferreira & J. Andrew McCammon
Pages: 733-745
Published online: 21 May 2012
AbstractforBrownian and Essential Dynamics Studies of the HIV-1 Integrase Catalytic Domain | References | PDF (854.9 KB)
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Article
NMR and Molecular Dynamics Studies of Tachykinins: Conformation of Substance P Fragment 4-11
Evans Coutinho, Shantaram Kamath, Anil Saran & Sudha Srivastava
Pages: 747-755
Published online: 21 May 2012
AbstractforNMR and Molecular Dynamics Studies of Tachykinins: Conformation of Substance P Fragment 4-11 | References | PDF (366.9 KB)
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Editorials

Editorial
Editorial Advisory Board
Pages: ebiii-ebx
Published online: 21 May 2012
First Page PreviewforEditorial Advisory Board | PDF (355.6 KB)
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