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Research Articles

Molecular dynamics simulation, synthesis and topoisomerase inhibitory actions of vanillin derivatives: a systematic computational structural integument

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Pages 11653-11663 | Received 06 Apr 2021, Accepted 24 Jul 2021, Published online: 06 Aug 2021
 

Abstract

A series of 4-hydroxy-3-methoxy benzaldehyde (vanillin) derivatives (3a–3r) was designed for the principle of Schiff base condensation with several individual sulfanilamide analogues. The inhibitory potencies of the designed compounds were evaluated through molecular docking simulation studies against the targets, breast cancer-topo isomerase-IIα and estrogen receptor-α; and the top scoring poses with higher binding energy were selected to assess the mode of binding and stability of each complex through molecular dynamics simulations. Compounds that remained stable in the active sites of the both target receptors through a number of strong H-bonds and hydrophobic contacts were selected. Based on the computational results, these selected compounds, 3b, 3e and 3f were synthesized and were followed up for structural elucidation attempts, by FT/ATR, 1H NMR and 13C NMR. From the experimental in vitro studies on 3b, 3e and 3f, the following remarkable activities against breast cancer cell line were done; IC50 values of 3b, 3e and 3f were noted, 6.7, 4.3 and 11 ng/mL, respectively. These newly synthesized compounds may be used as novel inhibitors of nuclear receptors with potential therapeutic applications in control of cancer.

Communicated by Ramaswamy H. Sarma

Acknowledgments

Authors are thankful to the Department of Chemistry, Ravenshaw University, Cuttack for 1H, 13C-spectral facilities; Department of Biotechnology, Mizoram Central University, Aizawl; and we gratefully acknowledge SPS, IMS & SUM Hospital of Siksha O Anusandhan Deemed to be University, Bhubaneswar-3, for necessary facilities.

Disclosure statement

The authors declared no conflict of interest.

Additional information

Funding

This study was supported by Indian Council of Medical Research, Government of India (ICMR-SRF to CR Sahoo, File No. 45/3/2020-DDI/BMS).

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