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Review

Functional metagenomics for the investigation of antibiotic resistance

Pages 443-447 | Received 08 Oct 2013, Accepted 12 Feb 2014, Published online: 20 Feb 2014
 

Abstract

Antibiotic resistance is a major threat to human health and well-being. To effectively combat this problem we need to understand the range of different resistance genes that allow bacteria to resist antibiotics. To do this the whole microbiota needs to be investigated. As most bacteria cannot be cultivated in the laboratory, the reservoir of antibiotic resistance genes in the non-cultivatable majority remains relatively unexplored. Currently the only way to study antibiotic resistance in these organisms is to use metagenomic approaches. Furthermore, the only method that does not require any prior knowledge about the resistance genes is functional metagenomics, which involves expressing genes from metagenomic clones in surrogate hosts. In this review the methods and limitations of functional metagenomics to isolate new antibiotic resistance genes and the mobile genetic elements that mediate their spread are explored.

10.4161/viru.28196

Disclosure of Potential Conflicts of Interest

No potential conflicts of interest were disclosed.