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Original Articles

PAM FLUORESCENCE: A BEGINNERS GUIDE FOR BENTHIC DIATOMISTS

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Pages 1-22 | Published online: 31 Oct 2011

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Elizabeth M. Stover & Kristin E. Judd. (2021) Low-level pharmaceuticals alter stream biofilm structure and function. Chemistry and Ecology 37:7, pages 616-632.
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Nur Ain Amani Abdul Mubin, Michelle Glory G Jonik, Nadthikphorn Kamphol, Zakia Sultana Juhi, Mahadi Mohammad & Sazlina Salleh. (2021) In situ photosynthetic performance of Porites lutea inhabiting contrasting habitats of the Northern Straits of Malacca (NSoM), Malaysia. Marine and Freshwater Behaviour and Physiology 54:4, pages 149-167.
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Christopher J. Williamson, Rupert Perkins, Marian L. Yallop, César Peteiro, Noemí Sanchez, Karl Gunnarsson, Maggie Gamble & Juliet Brodie. (2018) Photoacclimation and photoregulation strategies of Corallina (Corallinales, Rhodophyta) across the NE Atlantic. European Journal of Phycology 53:3, pages 290-306.
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Matilde Ravizza, Dean Giosio, Alan Henderson, Mark Hovenden, Monica Hudson, Sazlina Salleh, Jane Sargison, Jennifer L. Shaw, Jessica Walker & Gustaaf Hallegraeff. (2016) Light as a key driver of freshwater biofouling surface roughness in an experimental hydrocanal pipe rig. Biofouling 32:6, pages 685-697.
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Céline C. Allewaert, Pieter Vanormelingen, Thomas Pröschold, Patricia I. Gómez, Mariela A. González, Gust Bilcke, Sofie D'Hondt & Wim Vyverman. (2015) Species diversity in European Haematococcus pluvialis (Chlorophyceae, Volvocales). Phycologia 54:6, pages 583-598.
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Leah J. Cook & Steven N. Francoeur. (2013) Effects of simulated short-term road salt exposure on lotic periphyton function. Journal of Freshwater Ecology 28:2, pages 211-223.
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Caroline Souffreau, Pieter Vanormelingen, Koen Sabbe & Wim Vyverman. (2013) Tolerance of resting cells of freshwater and terrestrial benthic diatoms to experimental desiccation and freezing is habitat-dependent. Phycologia 52:3, pages 246-255.
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M. Mayer-Pinto, R.A. Coleman, A.J. Underwood & T.J. Tolhurst. (2011) Effects of zinc on microalgal biofilms in intertidal and subtidal habitats. Biofouling 27:7, pages 721-727.
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KathrynJ. Perkins, JessicaM. Andrewartha, Andrew McMinn, SuellenS. Cook & GustaafM. Hallegraeff. (2010) Succession and physiological health of freshwater microalgal fouling in a Tasmanian hydropower canal. Biofouling 26:6, pages 637-644.
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E. Navarro, C. T. Robinson, B. Wagner & R. Behra. (2007) Influence of Ultraviolet Radiation on UVR-Absorbing Compounds in Freshwater Algal Biofilms and Scenedesmus vacuolatus Cultures. Journal of Toxicology and Environmental Health, Part A 70:9, pages 760-767.
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Jasmin L. Millar, Emily L. M. Broadwell, Madeleine Lewis, Alexander M. C. Bowles, Andrew J. Tedstone & Christopher J. Williamson. (2024) Alpine glacier algal bloom during a record melt year. Frontiers in Microbiology 15.
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Eva Hejduková & Linda Nedbalová. (2021) Experimental freezing of freshwater pennate diatoms from polar habitats. Protoplasma 258:6, pages 1213-1229.
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Sazlina Salleh & Andrew McMinn. (2021) Tolerance of tropical marine microphytobenthos exposed to elevated irradiance and temperature. Biogeosciences 18:19, pages 5313-5326.
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Zakia Sultana Juhi, Nur Ain Amani Abdul Mubin, Michelle Glory G. Jonik, Sazlina Salleh & Mahadi Mohammad. (2021) Impact of short-term light variability on the photobiology of turbid water corals. Journal of Sea Research 175, pages 102088.
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María Rosa Pino-Otín, Elisa Langa, Jonatan Val, Ana M. Mainar & Diego Ballestero. (2021) Impact of citronellol on river and soil environments using non-target model organisms and natural populations. Journal of Environmental Management 287, pages 112303.
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Leon Katona, Yvonne Vadeboncoeur, Christopher T. Nietch & Katie Hossler. (2021) A Novel Thin-Film Technique to Improve Accuracy of Fluorescence-Based Estimates for Periphytic Biofilms. Water 13:11, pages 1464.
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Ricardo Cruz de Carvalho, Eduardo Feijão, Ana Rita Matos, Maria Teresa Cabrita, Sara C. Novais, Marco F. L. Lemos, Isabel Caçador, João Carlos Marques, Patrick Reis-Santos, Vanessa F. Fonseca & Bernardo Duarte. (2020) Glyphosate-Based Herbicide Toxicophenomics in Marine Diatoms: Impacts on Primary Production and Physiological Fitness. Applied Sciences 10:21, pages 7391.
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Dawei Sun, Haixia Xu, Haiyong Weng, Weijun Zhou, Yan Liang, Xiaoya Dong, Yong He & Haiyan Cen. (2020) Optimal temporal–spatial fluorescence techniques for phenotyping nitrogen status in oilseed rape. Journal of Experimental Botany 71:20, pages 6429-6443.
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S Mangan, KR Bryan, SF Thrush, RV Gladstone-Gallagher, AM Lohrer & CA Pilditch. (2020) Shady business: the darkening of estuaries constrains benthic ecosystem function. Marine Ecology Progress Series 647, pages 33-48.
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Elena Maggi & João Serôdio. (2020) Artificial Light at Night: A New Challenge in Microphytobenthos Research. Frontiers in Marine Science 7.
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Manuela D. Machado & Eduardo V. Soares. (2020) Reproductive cycle progression arrest and modification of cell morphology (shape and biovolume) in the alga Pseudokirchneriella subcapitata exposed to metolachlor. Aquatic Toxicology 222, pages 105449.
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Alexandre Barnett, Vona Méléder, Christine Dupuy & Johann Lavaud. (2020) The Vertical Migratory Rhythm of Intertidal Microphytobenthos in Sediment Depends on the Light Photoperiod, Intensity, and Spectrum: Evidence for a Positive Effect of Blue Wavelengths. Frontiers in Marine Science 7.
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Eva Menguy, Vincent Dumontet, Noémie Coulombier, Vincent Meriot, Loïc Le Déan, Vanille Barthelemy & Thierry Jauffrais. (2020) A method to assess algicidal activity of microalgal extracts coupling microalgae produced in stirred closed photobioreactor operating in continuous with pulse amplitude modulated (PAM) fluorometry. MethodsX 7, pages 101037.
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Antonella Guzzon, Francesca Di Pippo & Roberta Congestri. (2019) Wastewater Biofilm Photosynthesis in Photobioreactors. Microorganisms 7:8, pages 252.
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J Randall, S Wotherspoon, J Ross, JP Hermand & CR Johnson. (2019) An in situ study of production from diel oxygen modelling, oxygen exchange, and electron transport rate in the kelp Ecklonia radiata. Marine Ecology Progress Series 615, pages 51-65.
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James G. Black, Jonathan S. Stark, Glenn J. Johnstone, Andrew McMinn, Philip Boyd, John McKinlay, Simon Wootherspoon & John W. Runcie. (2019) In-situ behavioural and physiological responses of Antarctic microphytobenthos to ocean acidification. Scientific Reports 9:1.
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C. Lanier, F. Bernard, S. Dumez, J. Leclercq-Dransart, S. Lemière, F. Vandenbulcke, F. Nesslany, A. Platel, I. Devred, A. Hayet, D. Cuny & A. Deram. (2019) Combined toxic effects and DNA damage to two plant species exposed to binary metal mixtures (Cd/Pb). Ecotoxicology and Environmental Safety 167, pages 278-287.
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Cátia A. Sousa, Helena M.V.M. Soares & Eduardo V. Soares. (2018) Toxic effects of nickel oxide (NiO) nanoparticles on the freshwater alga Pseudokirchneriella subcapitata. Aquatic Toxicology 204, pages 80-90.
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An-Sofie D'Hondt, Willem Stock, Lander Blommaert, Tom Moens & Koen Sabbe. (2018) Nematodes stimulate biomass accumulation in a multispecies diatom biofilm. Marine Environmental Research 140, pages 78-89.
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Natalie Hicks, Xuan Liu, Richard Gregory, John Kenny, Anita Lucaci, Luca Lenzi, David M. Paterson & Katherine R. Duncan. (2018) Temperature Driven Changes in Benthic Bacterial Diversity Influences Biogeochemical Cycling in Coastal Sediments. Frontiers in Microbiology 9.
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Matthew J. Kaylor, Alba Argerich, Seth M. White, Brian J. VerWey & Ivan Arismendi. (2018) A cautionary tale for in situ fluorometric measurement of stream chlorophyll a : influences of light and periphyton biomass . Freshwater Science 37:2, pages 287-295.
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Natalia Gorska, Ewa Kowalska-Duda, Filip Pniewski & Adam Latała. (2018) On diel variability of marine sediment backscattering properties caused by microphytobenthos photosynthesis: Impact of environmental factors. Journal of Marine Systems 182, pages 1-11.
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Vona Méléder, Bruno Jesus, Alexandre Barnett, Laurent Barillé & Johann Lavaud. (2018) Microphytobenthos primary production estimated by hyperspectral reflectance. PLOS ONE 13:5, pages e0197093.
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Natasha Méndez-Ferrer, Pamela Hallock & David L. Jones. (2018) Photochemical Efficiencies of Diatom Symbionts in Hospite in Amphistegina Gibbosa (foraminifera) Across Seasons in the Florida Keys, Usa. Journal of Foraminiferal Research 48:1, pages 4-16.
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Mariana Mayer-Pinto. (2017) Impacts of bleach on bryozoans: A framework to distinguish direct and indirect effects using chemical and physical manipulations. Science of The Total Environment 599-600, pages 58-67.
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Christoph Mensens, Frederik De Laender, Colin R. Janssen, Koen Sabbe & Marleen De Troch. (2017) Different response–effect trait relationships underlie contrasting responses to two chemical stressors. Journal of Ecology 105:6, pages 1598-1609.
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Steven N. Francoeur. (2017) Stimulation of Saginaw Bay charophyte photosynthesis by phosphorus. Journal of Great Lakes Research 43:3, pages 192-197.
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Risa S. Wijihastuti, Navid R. Moheimani, Parisa A. Bahri, Jeffrey J. Cosgrove & Makoto M. Watanabe. (2016) Growth and photosynthetic activity of Botryococcus braunii biofilms. Journal of Applied Phycology 29:3, pages 1123-1134.
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Rupert G. Perkins, Elizabeth Bagshaw, Lisa Mol, Christopher J. Williamson, Dan Fagan, Maggie Gamble & Marian L. Yallop. (2017) Photoacclimation by Arctic cryoconite phototrophs. FEMS Microbiology Ecology 93:5.
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Chris J. Chandler, Bodo D. Wilts, Juliet Brodie & Silvia Vignolini. (2016) Structural Color in Marine Algae. Advanced Optical Materials 5:5.
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Gustavo P. M. K. Ciniciato, Fong-Lee Ng, Siew-Moi Phang, Muhammad Musoddiq Jaafar, Adrian C. Fisher, Kamran Yunus & Vengadesh Periasamy. (2016) Investigating the association between photosynthetic efficiency and generation of biophotoelectricity in autotrophic microbial fuel cells. Scientific Reports 6:1.
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James K.H. Fang, Christine H.L. Schönberg, Ove Hoegh-Guldberg & Sophie Dove. (2016) Day–night ecophysiology of the photosymbiotic bioeroding sponge Cliona orientalis Thiele, 1900. Marine Biology 163:5.
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YANG Yan, ZHU Xuezhu, ZHANG Min, KONG Fanxiang & HUANG Yaxin. (2016) Response patterns of different algae to the interaction between temperature and phosphorus. Journal of Lake Sciences 28:4, pages 843-851.
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Jonatan Val, Selene Muñiz, Joan Gomà & Enrique Navarro. (2016) Influence of global change-related impacts on the mercury toxicity of freshwater algal communities. Science of The Total Environment 540, pages 53-62.
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Elisa L.-Y. Tan, Mariana Mayer-Pinto, Emma L. Johnston & Katherine A. Dafforn. (2015) Differences in Intertidal Microbial Assemblages on Urban Structures and Natural Rocky Reef. Frontiers in Microbiology 6.
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Manuela D. Machado, Ana R. Lopes & Eduardo V. Soares. (2015) Responses of the alga Pseudokirchneriella subcapitata to long-term exposure to metal stress. Journal of Hazardous Materials 296, pages 82-92.
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Yi Li, Hong Zhu, Xueqian Lei, Huajun Zhang, Guanjing Cai, Zhangran Chen, Lijun Fu, Hong Xu & Tianling Zheng. (2015) The death mechanism of the harmful algal bloom species Alexandrium tamarense induced by algicidal bacterium Deinococcus sp. Y35. Frontiers in Microbiology 6.
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Mariana Mayer-Pinto, Antony J. Underwood & Ezequiel M. Marzinelli. (2015) The matrix influences direct and indirect effects of an anthropogenic disturbance on marine organisms. Environmental Research 136, pages 15-20.
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Y. V. Viazau, N. V. Kozel, V. P. Domanski & N. V. Shalygo. (2015) Spectral Changes of Cucumber Leaf During Adaptation of the Photosynthetic Apparatus to Led Lighting. Journal of Applied Spectroscopy 81:6, pages 1019-1024.
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Alice Newton, John Icely, Sónia Cristina, Ana Brito, Ana Cristina Cardoso, Franciscus Colijn, Simona Dalla Riva, Flemming Gertz, Jens Würgler Hansen, Marianne Holmer, Kateryna Ivanova, Erkki Leppäkoski, Donata Melaku Canu, Chiara Mocenni, Stephen Mudge, Nicholas Murray, Morten Pejrup, Arturas Razinkovas, Sofia Reizopoulou, Angel Pérez-Ruzafa, Gerard Schernewski, Hendrik Schubert, Laishalla Carr, Cosimo Solidoro, PierluigiViaroli & José-Manuel Zaldívar. (2014) An overview of ecological status, vulnerability and future perspectives of European large shallow, semi-enclosed coastal systems, lagoons and transitional waters. Estuarine, Coastal and Shelf Science 140, pages 95-122.
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YUE Tao, ZHANG Delu & HU Chunxiang. (2014) Utilization of phosphorus in four forms of the three dominant <i>Microcystis</i> morphospecies in Lake Taihu. Journal of Lake Sciences 26:3, pages 379-384.
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C Golléty & TP Crowe. (2013) Contribution of biofilm to ecosystem functioning in rock pools with different macroalgal assemblages. Marine Ecology Progress Series 482, pages 69-79.
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Sebastian J. Hennige, Kathryn J. Coyne, Hugh MacIntyre, Justin Liefer & Mark E. Warner. (2013) The photobiology of Heterosigma akashiwo . Photoacclimation, diurnal periodicity, and its ability to rapidly exploit exposure to high light . Journal of Phycology 49:2, pages 349-360.
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Sarah B. Whorley & Steven N. Francoeur. (2013) Active fluorometry improves nutrient-diffusing substrata bioassay. Freshwater Science 32:1, pages 108-115.
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Caroline Souffreau, Pieter Vanormelingen, Bart Van de Vijver, Tsvetelina Isheva, Elie Verleyen, Koen Sabbe & Wim Vyverman. (2013) Molecular Evidence for Distinct Antarctic Lineages in the Cosmopolitan Terrestrial Diatoms Pinnularia borealis and Hantzschia amphioxys. Protist 164:1, pages 101-115.
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E. Maggi, A. C. Jackson, T. Tolhurst, A. J. Underwood & M. G. Chapman. (2012) Changes in microphytobenthos fluorescence over a tidal cycle: implications for sampling designs. Hydrobiologia 701:1, pages 301-312.
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Kara R. Radabaugh & Ernst B. Peebles. (2012) Detection and Classification of Phytoplankton Deposits Along an Estuarine Gradient. Estuaries and Coasts 35:6, pages 1361-1375.
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T. J. Tolhurst, M. G. Chapman, A. J. Underwood & J. J. Cruz. (2012) Technical Note: The effects of five different defaunation methods on biogeochemical properties of intertidal sediment. Biogeosciences 9:9, pages 3647-3661.
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Sazlina Salleh & Andrew McMinn. (2011) THE EFFECTS OF TEMPERATURE ON THE PHOTOSYNTHETIC PARAMETERS AND RECOVERY OF TWO TEMPERATE BENTHIC MICROALGAE , AMPHORA CF. COFFEAEFORMIS AND COCCONEIS CF. SUBLITTORALIS (BACILLARIOPHYCEAE) 1 . Journal of Phycology 47:6, pages 1413-1424.
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Sazlina Salleh & Andrew McMinn. (2011) Photosynthetic response and recovery of Antarctic marine benthic microalgae exposed to elevated irradiances and temperatures. Polar Biology 34:6, pages 855-869.
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Farzaneh Kazemipour, Vona Méléder & Patrick Launeau. (2011) Optical properties of microphytobenthic biofilms (MPBOM): Biomass retrieval implication. Journal of Quantitative Spectroscopy and Radiative Transfer 112:1, pages 131-142.
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R. G. Perkins, J. C. Kromkamp, J. Serôdio, J. Lavaud, B. Jesus, J. L. Mouget, S. Lefebvre & R. M. Forster. 2010. Chlorophyll a Fluorescence in Aquatic Sciences: Methods and Applications. Chlorophyll a Fluorescence in Aquatic Sciences: Methods and Applications 237 275 .
R.J. Murphy, T.J. Tolhurst, M.G. Chapman & A.J. Underwood. (2009) Seasonal distribution of chlorophyll on mudflats in New South Wales, Australia measured by field spectrometry and PAM fluorometry. Estuarine, Coastal and Shelf Science 84:1, pages 108-118.
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D. Davoult, A. Migné, A. Créach, F. Gévaert, C. Hubas, N. Spilmont & G. Boucher. (2008) Spatio-temporal variability of intertidal benthic primary production and respiration in the western part of the Mont Saint-Michel Bay (Western English Channel, France). Hydrobiologia 620:1, pages 163-172.
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Christian Alsterberg, Kristina Sundbäck & Fredrik Larson. (2007) Direct and indirect effects of an antifouling biocide on benthic microalgae and meiofauna. Journal of Experimental Marine Biology and Ecology 351:1-2, pages 56-72.
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O. Herlory, P. Richard & G. F. Blanchard. (2007) Methodology of light response curves: application of chlorophyll fluorescence to microphytobenthic biofilms. Marine Biology 153:1, pages 91-101.
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Kirstie E Dyson, Mark T Bulling, Martin Solan, Gema Hernandez-Milian, David G Raffaelli, Piran C.L White & David M Paterson. (2007) Influence of macrofaunal assemblages and environmental heterogeneity on microphytobenthic production in experimental systems. Proceedings of the Royal Society B: Biological Sciences 274:1625, pages 2547-2554.
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Aline Migné, François Gévaert, Anne Créach, Nicolas Spilmont, Emilie Chevalier & Dominique Davoult. (2007) Photosynthetic activity of intertidal microphytobenthic communities during emersion: in situ measurements of chlorophyll fluorescence (PAM) and CO 2 flux (IRGA) 1 . Journal of Phycology 43:5, pages 864-873.
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JEN WARING, NEIL R. BAKER & GRAHAM J. C. UNDERWOOD. (2007) Responses of estuarine intertidal microphytobenthic algal assemblages to enhanced ultraviolet B radiation. Global Change Biology 13:7, pages 1398-1413.
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B. Jesus, R. G. Perkins, C. R. Mendes, V. Brotas & D. M. Paterson. (2006) Chlorophyll fluorescence as a proxy for microphytobenthic biomass: alternatives to the current methodology. Marine Biology 150:1, pages 17-28.
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R. G. Perkins, J-L. Mouget, S. Lefebvre & J. Lavaud. (2006) Light response curve methodology and possible implications in the application of chlorophyll fluorescence to benthic diatoms. Marine Biology 149:4, pages 703-712.
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M. Andersson, H. Schubert, M. Pedersén & P. Snoeijs. (2006) Different patterns of carotenoid composition and photosynthesis acclimation in two tropical red algae. Marine Biology 149:3, pages 653-665.
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B. Jesus, V. Brotas, M. Marani & D.M. Paterson. (2005) Spatial dynamics of microphytobenthos determined by PAM fluorescence. Estuarine, Coastal and Shelf Science 65:1-2, pages 30-42.
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Xinyan Xue, Ning Gao & Fu-Liu Xu. (2022) Toxicity of Perfluooctane Sulfonate (Pfos) and Perfluorobutane Sulfonate (Pfbs) to Scenedesmus Obliquus : Photosynthetic Characteristics, Oxidative Damage and Transcriptome Analysis. SSRN Electronic Journal.
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