Advanced search
Publication Cover
Critical Reviews in Plant Sciences Volume 33, 2014 - Issue 2-3: Special Issue: Stress Biology of Specialty Crops
Submit an article Journal homepage
3,026
Views
65
CrossRef citations to date
0
Altmetric
Original Article

Transcriptomic, Proteomic, Metabolomic and Functional Genomic Approaches for the Study of Abiotic Stress in Vegetable Crops

Jing ZhuangState Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University, Nanjing,, 210095, China;Ministry of Agriculture Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in East China, Nanjing Agricultural University, Nanjing,, 210095, China;Engineering Research Center of Horticultural Crop Germplasm Enhancement and Utilization, Ministry of Education, Nanjing Agricultural University, Nanjing,, 210095, China
,
Jian ZhangAlberta Innovates-Technology Futures/Alberta Research Council, Vegreville, Alberta,, T9C 1T4, Canada
,
Xi-Lin HouState Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University, Nanjing,, 210095, China;Ministry of Agriculture Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in East China, Nanjing Agricultural University, Nanjing,, 210095, China;Engineering Research Center of Horticultural Crop Germplasm Enhancement and Utilization, Ministry of Education, Nanjing Agricultural University, Nanjing,, 210095, China
,
Feng WangState Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University, Nanjing,, 210095, China;Ministry of Agriculture Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in East China, Nanjing Agricultural University, Nanjing,, 210095, China;Engineering Research Center of Horticultural Crop Germplasm Enhancement and Utilization, Ministry of Education, Nanjing Agricultural University, Nanjing,, 210095, China
&
Ai-Sheng XiongState Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University, Nanjing,, 210095, China;Ministry of Agriculture Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in East China, Nanjing Agricultural University, Nanjing,, 210095, China;Engineering Research Center of Horticultural Crop Germplasm Enhancement and Utilization, Ministry of Education, Nanjing Agricultural University, Nanjing,, 210095, ChinaCorrespondence[email protected]
Pages 225-237 | Published online: 07 Mar 2014

Citations (65)

Keep up to date with the latest research on this topic with citation updates for this article.

Subscribe to citation updates

Read on this site (2)

Bei Wu, Meng-Yao Li, Zhi-Sheng Xu, Feng Wang & Ai-Sheng Xiong. (2018) Genome-wide analysis of WRKY transcription factors and their response to abiotic stress in celery (Apium graveolens L.). Biotechnology & Biotechnological Equipment 32:2, pages 293-302.
Read now
Zong-Ming (Max) Cheng. (2014) Introduction to the Special Issue: Stress Biology of Specialty Crops. Critical Reviews in Plant Sciences 33:2-3, pages 90-91.
Read now

Articles from other publishers (63)

Pietro Gramazio, David Alonso, Andrea Arrones, Gloria Villanueva, Mariola Plazas, Laura Toppino, Lorenzo Barchi, Ezio Portis, Paola Ferrante, Sergio Lanteri, Giuseppe Leonardo Rotino, Giovanni Giuliano, Santiago Vilanova & Jaime Prohens. (2023) Conventional and new genetic resources for an eggplant breeding revolution. Journal of Experimental Botany 74:20, pages 6285-6305.
Crossref
Minmin Liu, Gangjun Zhao, Xin Huang, Ting Pan, Wenjie Chen, Mei Qu, Bo Ouyang, Min Yu & Sergey Shabala. (2023) Candidate regulators of drought stress in tomato revealed by comparative transcriptomic and proteomic analyses. Frontiers in Plant Science 14.
Crossref
Vikas Mangal, Milan Kumar Lal, Rahul Kumar Tiwari, Muhammad Ahsan Altaf, Salej Sood, Vijay Gahlaut, Ashish Bhatt, Ajay Kumar Thakur, Ravinder Kumar, Vinay Bhardwaj, Vinod Kumar, Brajesh Singh, Rajender Singh & Devendra Kumar. (2023) A comprehensive and conceptual overview of omics-based approaches for enhancing the resilience of vegetable crops against abiotic stresses. Planta 257:4.
Crossref
Ping Huang, Rashida Hameed, Manzer Abbas, Sidra Balooch, Badr Alharthi, Yizhou Du, Adeel Abbas, Afifa Younas & Daolin Du. (2023) Integrated omic techniques and their genomic features for invasive weeds. Functional & Integrative Genomics 23:1.
Crossref
Prasanta Kumar Majhi, Basit Raza, Partha Pratim Behera, Shravan Kumar Singh, Aalok Shiv, Suma C. Mogali, Tanmaya Kumar Bhoi, Biswaranjan Patra & Biswaranjan Behera. 2023. Biodiversity, Functional Ecosystems and Sustainable Food Production. Biodiversity, Functional Ecosystems and Sustainable Food Production 73 116 .
Ibrahim M. Abdelsalam, Soumya Ghosh, Samar Sami AlKafaas, Heba Bedair, Alhadji Malloum, Sara Samy ElKafas & Khalil M. Saad-Allah. (2022) Nanotechnology as a tool for abiotic stress mitigation in horticultural crops. Biologia 78:1, pages 163-178.
Crossref
Lin Chen, Yongrui Shen, Wenjing Yang, Qiming Pan, Chao Li, Qingguo Sun, Qi Zeng, Baohua Li & Lugang Zhang. (2022) Comparative Metabolic Study of Two Contrasting Chinese Cabbage Genotypes under Mild and Severe Drought Stress. International Journal of Molecular Sciences 23:11, pages 5947.
Crossref
Xin Xu, Qi Wang, Wenqi Li, Tixu Hu, Qiqi Wang, Yue Yin, Xiaohui Liu, Shen He, Mingke Zhang, Yan Liang, Jianhua Zhu & Xiangqiang Zhan. (2022) Overexpression of SlBBX17 affects plant growth and enhances heat tolerance in tomato. International Journal of Biological Macromolecules 206, pages 799-811.
Crossref
Xiaoyu Wang, Ying Wu, Mengdi Sun, Xue Wei, Hongyan Huo, Lili Yu & Jixing Zhang. (2022) Dynamic transcriptome profiling revealed key genes and pathways associated with cold stress in castor (Ricinus communis L.). Industrial Crops and Products 178, pages 114610.
Crossref
Sima Taheri, Saikat Gantait, Parisa Azizi & Purabi Mazumdar. (2022) Drought tolerance improvement in Solanum lycopersicum: an insight into “OMICS” approaches and genome editing. 3 Biotech 12:3.
Crossref
Kumar Nishant Chourasia, Sanket Jijabrao More, Ashok Kumar, Dharmendra Kumar, Brajesh Singh, Vinay Bhardwaj, Awadhesh Kumar, Sourav Kumar Das, Rajesh Kumar Singh, Gaurav Zinta, Rahul Kumar Tiwari & Milan Kumar Lal. (2022) Salinity responses and tolerance mechanisms in underground vegetable crops: an integrative review. Planta 255:3.
Crossref
Rajni Parmar, Romit Seth & Ram Kumar Sharma. (2022) Genome-wide identification and characterization of functionally relevant microsatellite markers from transcription factor genes of Tea (Camellia sinensis (L.) O. Kuntze). Scientific Reports 12:1.
Crossref
Xiao-Jing Wang, Qing Luo, Tong Li, Ping-Hong Meng, Yu-Ting Pu, Jie-Xia Liu, Jian Zhang, Hui Liu, Guo-Fei Tan & Ai-Sheng Xiong. (2022) Origin, evolution, breeding, and omics of Apiaceae: a family of vegetables and medicinal plants. Horticulture Research 9.
Crossref
Jingyao Ren, Chunji Jiang, He Zhang, Xiaolong Shi, Xin Ai, Rengyuan Li, Jiale Dong, Jing Wang, Xinhua Zhao & Haiqiu Yu. (2021) LncRNA ‐mediated ceRNA networks provide novel potential biomarkers for peanut drought tolerance . Physiologia Plantarum 174:1.
Crossref
Habeeb Shaik Mohideen, Archit Gupta & Sewali Ghosh. 2022. Bioinformatics in Agriculture. Bioinformatics in Agriculture 503 512 .
Archa Vijay, Ajay Kumar, Arun M. Radhakrishnan, Sushil Kumar, Kanwaljeet Singh, Nirala Ramchiary & Mallappa Kumara Swamy. 2022. Phytochemical Genomics. Phytochemical Genomics 219 261 .
Sanjam Chandna, Kunal Gogde, Ravneet Kaur, Varsha Sagar & Jayeeta Bhaumik. 2022. The Role of Nanoparticles in Plant Nutrition under Soil Pollution. The Role of Nanoparticles in Plant Nutrition under Soil Pollution 199 221 .
Malarvizhi Mathiazhagan, Bhavya Chidambara, Laxman R. Hunashikatti & Kundapura V. Ravishankar. (2021) Genomic Approaches for Improvement of Tropical Fruits: Fruit Quality, Shelf Life and Nutrient Content. Genes 12:12, pages 1881.
Crossref
Xiujing Yin, Song Liu, Yukun Qin, Ronge Xing, Kecheng Li, Chunlin Yu, Xiaolin Chen & Pengcheng Li. (2021) Metabonomics analysis of drought resistance of wheat seedlings induced by β-aminobutyric acid-modified chitooligosaccharide derivative. Carbohydrate Polymers 272, pages 118437.
Crossref
Athiappan Selvi, Kaliannan Devi, Ramaswamy Manimekalai, Perumal Thirugnanasambandam Prathima, Rabisha Valiyaparambth & Kasirajan Lakshmi. (2021) High-throughput miRNA deep sequencing in response to drought stress in sugarcane. 3 Biotech 11:7.
Crossref
Zhongying Shan, Xinglu Luo, Meiyan Wu, Limei Wei, Zhupeng Fan & Yanmei Zhu. (2020) Genome-wide identification and expression of GRAS gene family members in cassava. BMC Plant Biology 20:1.
Crossref
Fei Dong, Chuanzeng Wang, Yuhui Dong, Shuqin Hao, Lixia Wang, Xiudong Sun & Shiqi Liu. (2020) Differential expression of microRNAs in tomato leaves treated with different light qualities. BMC Genomics 21:1.
Crossref
Qing Ye, Jintao Yu, Zhen Zhang, Lixia Hou & Xin Liu. (2020) VvBAP1, a Grape C2 Domain Protein, Plays a Positive Regulatory Role Under Heat Stress. Frontiers in Plant Science 11.
Crossref
Serafima Arkhimandritova, Alexey Shavarda & Elena Potokina. (2020) Key metabolites associated with the onset of flowering of guar genotypes (Cyamopsis tetragonoloba (L.) Taub). BMC Plant Biology 20:S1.
Crossref
Jordi Sardans, Albert Gargallo-Garriga, Otmar Urban, Karel Klem, Tom W.N. Walker, Petr Holub, Ivan A. Janssens & Josep Peñuelas. (2020) Ecometabolomics for a Better Understanding of Plant Responses and Acclimation to Abiotic Factors Linked to Global Change. Metabolites 10:6, pages 239.
Crossref
Federico Stilo, Giulia Tredici, Carlo Bicchi, Albert RobbatJr.Jr., Joshua Morimoto & Chiara Cordero. (2020) Climate and Processing Effects on Tea (Camellia sinensis L. Kuntze) Metabolome: Accurate Profiling and Fingerprinting by Comprehensive Two-Dimensional Gas Chromatography/Time-of-Flight Mass Spectrometry. Molecules 25:10, pages 2447.
Crossref
Zahide Neslihan Ozturk Gokce, Seyda Akbas, Sefa Ayten, M. Hussain Azimi, Reyhan Das, Saime Buse Guven, Ebrar Karabulut, Seher Omezli, Zehra Uzer, Bayram Ali Yerlikaya & Allah Bakhsh. 2020. Agronomic Crops. Agronomic Crops 503 526 .
Guo-Tian Liu, Jian-Fu Jiang, Xin-Na Liu, Jin-Zhu Jiang, Lei Sun, Wei Duan, Rui-Min Li, Yi Wang, David Lecourieux, Chong-Huai Liu, Shao-Hua Li & Li-Jun Wang. (2019) New insights into the heat responses of grape leaves via combined phosphoproteomic and acetylproteomic analyses. Horticulture Research 6:1.
Crossref
Rajesh Yarra & P. B. Kirti. (2019) Expressing class I wheat NHX (TaNHX2) gene in eggplant (Solanum melongena L.) improves plant performance under saline condition. Functional & Integrative Genomics 19:4, pages 541-554.
Crossref
Roberta Bulgari, Giulia Franzoni & Antonio Ferrante. (2019) Biostimulants Application in Horticultural Crops under Abiotic Stress Conditions. Agronomy 9:6, pages 306.
Crossref
Rajesh Yarra. (2019) The wheat NHX gene family: Potential role in improving salinity stress tolerance of plants. Plant Gene 18, pages 100178.
Crossref
Hui Li, Zhi-Wei Liu, Zhi-Jun Wu, Yong-Xin Wang, Rui-Min Teng & Jing Zhuang. (2018) Differentially expressed protein and gene analysis revealed the effects of temperature on changes in ascorbic acid metabolism in harvested tea leaves. Horticulture Research 5:1.
Crossref
Lazar Novaković, Tingting Guo, Antony Bacic, Arun Sampathkumar & Kim Johnson. (2018) Hitting the Wall—Sensing and Signaling Pathways Involved in Plant Cell Wall Remodeling in Response to Abiotic Stress. Plants 7:4, pages 89.
Crossref
Tong Li, Xin-Yue Zhang, Ying Huang, Zhi-Sheng Xu, Feng Wang & Ai-Sheng Xiong. (2018) An R2R3-MYB transcription factor, SlMYB28, involved in the regulation of TYLCV infection in tomato. Scientia Horticulturae 237, pages 192-200.
Crossref
Iva Pavlović, Aleš Pěnčík, Ondřej Novák, Valerija Vujčić, Sandra Radić Brkanac, Hrvoje Lepeduš, Miroslav Strnad & Branka Salopek-Sondi. (2018) Short-term salt stress in Brassica rapa seedlings causes alterations in auxin metabolism. Plant Physiology and Biochemistry 125, pages 74-84.
Crossref
Yong-Xin Wang, Zhi-Wei Liu, Zhi-Jun Wu, Hui Li, Wen-Li Wang, Xin Cui & Jing Zhuang. (2018) Genome-wide identification and expression analysis of GRAS family transcription factors in tea plant (Camellia sinensis). Scientific Reports 8:1.
Crossref
Muhamad Akbar, Asmat Ahmad, Gires Usup & Hamidun Bunawan. (2018) Current Knowledge and Recent Advances in Marine Dinoflagellate Transcriptomic Research. Journal of Marine Science and Engineering 6:1, pages 13.
Crossref
Zhongfu Ni, Hongjian Li, Yue Zhao, Huiru Peng, Zhaorong Hu, Mingming Xin & Qixin Sun. (2018) Genetic improvement of heat tolerance in wheat: Recent progress in understanding the underlying molecular mechanisms. The Crop Journal 6:1, pages 32-41.
Crossref
Minmin Liu, Huiyang Yu, Gangjun Zhao, Qiufeng Huang, Yongen Lu & Bo Ouyang. (2017) Identification of drought-responsive microRNAs in tomato using high-throughput sequencing. Functional & Integrative Genomics 18:1, pages 67-78.
Crossref
Yong-Xin Wang, Zhi-Wei Liu, Hui Li, Wen-Li Wang, Xin Cui & Jing Zhuang. 2018. Stress Physiology of Tea in the Face of Climate Change. Stress Physiology of Tea in the Face of Climate Change 25 37 .
Pannaga Krishnamurthy, Lin Qingsong & Prakash P. Kumar. 2018. Salinity Responses and Tolerance in Plants, Volume 2. Salinity Responses and Tolerance in Plants, Volume 2 239 266 .
Minmin Liu, Huiyang Yu, Gangjun Zhao, Qiufeng Huang, Yongen Lu & Bo Ouyang. (2017) Profiling of drought-responsive microRNA and mRNA in tomato using high-throughput sequencing. BMC Genomics 18:1.
Crossref
Ying Huang, Hong-Yu Ma, Wei Huang, Feng Wang, Zhi-Sheng Xu & Ai-Sheng Xiong. (2016) Comparative proteomic analysis provides novel insight into the interaction between resistant vs susceptible tomato cultivars and TYLCV infection. BMC Plant Biology 16:1.
Crossref
Meng-Yao Li, Xiong Song, Feng Wang & Ai-Sheng Xiong. (2016) Suitable Reference Genes for Accurate Gene Expression Analysis in Parsley (Petroselinum crispum) for Abiotic Stresses and Hormone Stimuli. Frontiers in Plant Science 7.
Crossref
Peng Cui, Hongbo Liu, Faisal Islam, Lan Li, Muhammad A. Farooq, Songlin Ruan & Weijun Zhou. (2016) OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa. Frontiers in Plant Science 7.
Crossref
Agnieszka Waśkiewicz, Olimpia Gładysz, Monika Beszterda & Piotr Goliński. 2016. Water Stress and Crop Plants. Water Stress and Crop Plants 393 411 .
Katja Witzel & Hans-Peter Mock. 2016. Agricultural Proteomics Volume 2. Agricultural Proteomics Volume 2 53 69 .
Éderson Akio Kido, José Ribamar Costa Ferreira-Neto, Valesca Pandolfi, Amanda Cordeiro de Melo Souza & Ana Maria Benko-Iseppon. 2016. Drought Stress Tolerance in Plants, Vol 2. Drought Stress Tolerance in Plants, Vol 2 153 185 .
Jing Ma, Meng-Yao Li, Feng Wang, Jun Tang & Ai-Sheng Xiong. (2015) Genome-wide analysis of Dof family transcription factors and their responses to abiotic stresses in Chinese cabbage. BMC Genomics 16:1.
Crossref
Tomás Grevenstuk, Annick Moing, Mickaël Maucourt, Catherine Deborde & Anabela Romano. (2015) Aluminium stress disrupts metabolic performance of Plantago almogravensis plantlets transiently. BioMetals 28:6, pages 997-1007.
Crossref
Meng-Yao Li, Zhi-Sheng Xu, Ying Huang, Chang Tian, Feng Wang & Ai-Sheng Xiong. (2015) Genome-wide analysis of AP2/ERF transcription factors in carrot (Daucus carota L.) reveals evolution and expression profiles under abiotic stress. Molecular Genetics and Genomics 290:6, pages 2049-2061.
Crossref
Ashish Saxena & Vicki L. Schlegel. 2015. Genomics, Proteomics and Metabolomics in Nutraceuticals and Functional Foods. Genomics, Proteomics and Metabolomics in Nutraceuticals and Functional Foods 347 356 .
Jing Zhuang, Feng Wang, Zhi-Sheng Xu & Ai-Sheng Xiong. (2015) Microarray analysis of different expression profiles between wild-type and transgenic rice seedlings overexpression OsDREB1BI gene. Biologia 70:6, pages 760-770.
Crossref
Yi-Yun Chen, Meng-Yao Li, Xue-Jun Wu, Ying Huang, Jing Ma & Ai-Sheng Xiong. (2015) Genome-wide analysis of basic helix−loop−helix family transcription factors and their role in responses to abiotic stress in carrot. Molecular Breeding 35:5.
Crossref
Katja Witzel, Susanne Neugart, Silke Ruppel, Monika Schreiner, Melanie Wiesner & Susanne Baldermann. (2015) Recent progress in the use of ‘omics technologies in brassicaceous vegetables. Frontiers in Plant Science 6.
Crossref
Yi-Yun Chen, Meng-Yao Li, Yan Li, Feng Wang, Zhi-Sheng Xu & Ai-Sheng Xiong. (2015) Isolation and characterization of the Agmt2 gene and its response to abiotic and metalstress in Apium graveolens. Scientia Horticulturae 186, pages 1-6.
Crossref
Chang Tian, Qian Jiang, Feng Wang, Guang-Long Wang, Zhi-Sheng Xu & Ai-Sheng Xiong. (2015) Selection of Suitable Reference Genes for qPCR Normalization under Abiotic Stresses and Hormone Stimuli in Carrot Leaves. PLOS ONE 10:2, pages e0117569.
Crossref
Xiao-Ling Jia, Guang-Long Wang, Fei Xiong, Xu-Run Yu, Zhi-Sheng Xu, Feng Wang & Ai-Sheng Xiong. (2015) De novo assembly, transcriptome characterization, lignin accumulation and anatomic characteristics: novel insights into lignin biosynthesis during celery leaf development. Scientific Reports 5:1.
Crossref
Guo-Fei Tan, Feng Wang, Meng-Yao Li, Guang-Long Wang, Qian Jiang & Ai-Sheng Xiong. (2014) De novo assembly and transcriptome characterization: novel insights into the temperature stress in Cryptotaenia japonica Hassk. Acta Physiologiae Plantarum 37:1.
Crossref
Chanjuan Liang, Theo W. Prins, Clemens C.M. van de Wiel & Esther J. Kok. (2014) Safety aspects of genetically modified crops with abiotic stress tolerance. Trends in Food Science & Technology 40:1, pages 115-122.
Crossref
Scott AL Hayward. (2014) Application of functional ‘Omics’ in environmental stress physiology: insights, limitations, and future challenges. Current Opinion in Insect Science 4, pages 35-41.
Crossref
Maurizio Rossetto & Robert J. Henry. (2014) Escape from the laboratory: new horizons for plant genetics. Trends in Plant Science 19:9, pages 554-555.
Crossref
Yan Li, Yi-Yun Chen, Feng Wang, Zhi-Sheng Xu, Qian Jiang & Ai-Sheng Xiong. (2014) Isolation and characterization of the Agvip1 gene and response to abiotic and metal ions stresses in three celery cultivars. Molecular Biology Reports 41:9, pages 6003-6011.
Crossref

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Order Reprints Request Corporate Permissions

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

Request Academic Permissions

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.