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Journal of Biomolecular Structure and Dynamics Volume 11, 1993 - Issue 1
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Original Articles

Characteristics of the Large (dA).(dT) Homopolymer Tracts in D. discoideum Gene Flanking and Intron Sequences

Kenneth A. Marx Department of Chemistry, University of Massachusetts Lowell, Lowell, MA, 01854
,
Samuel T. Hess Department of Biochemistry, Microbiology and Molecular Biology University of Maine, Orono, ME, 04469
&
R. D. Blake Department of Biochemistry, Microbiology and Molecular Biology University of Maine, Orono, ME, 04469
Pages 57-66 | Received 11 Feb 1993, Published online: 21 May 2012

Citations (13)

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Read on this site (3)

KennethA. Marx, Yue Zhou & ImanQ. Kishawi. (2006) Evidence for Long Poly(dA).Poly(dT) Tracts in D. Discoideum DNA at High Frequencies and Their Preferential Avoidance of Nucleosomal DNA Core Regions. Journal of Biomolecular Structure and Dynamics 23:4, pages 429-446.
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KennethA. Marx, ImanQ. Assil, J.W. Bizzaro & R.D. Blake. (1998) Comparison of Experimental to MELTSIM Calculated DNA Melting of the (A+T) Rich Dictyostelium Discoideum Genome: Denaturation Maps Distinguish Exons From Introns. Journal of Biomolecular Structure and Dynamics 16:2, pages 329-339.
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KennethA. Marx, SamuelT. Hess & R.D. Blake. (1994) Alignment of (dA)·(dT) Homopolymer Tracts in Gene Flanking Sequences Suggests Nucleosomal Periodicity in D. discoideum DNA. Journal of Biomolecular Structure and Dynamics 12:1, pages 235-246.
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Articles from other publishers (10)

V. M. Komarov & A. A. Samchenko. (2020) Bi-Stability of a Pyramidal Structure of NH2 Groups in Nitrous Bases and its Role in the Structural and Functional Organization of the Genomic DNA. Russian Physics Journal 63:8, pages 1322-1338.
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A. A. Samchenko, S. S. Kiselev, A. V. Kabanov, M. S. Kondratjev & V. M. Komarov. (2017) On the nature of the domination of oligomeric (dA:dT) n tracts in the structure of eukaryotic genomes. Biophysics 61:6, pages 813-824.
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Yue Zhou, Jeffrey W Bizzaro & Kenneth A Marx. (2004) Homopolymer tract length dependent enrichments in functional regions of 27 eukaryotes and their novel dependence on the organism DNA (G+C)% composition. BMC Genomics 5:1.
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Dang D Long, Ivo Grosse & Kenneth A Marx. (2004) Coding and non-coding DNA thermal stability differences in eukaryotes studied by melting simulation, base shuffling and DNA nearest neighbor frequency analysis. Biophysical Chemistry 110:1-2, pages 25-38.
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NIKOLAY V. DOKHOLYAN, SERGEY V. BULDYREV, SHLOMO HAVLIN & H.EUGENE STANLEY. (2000) Distributions of Dimeric Tandem Repeats in Non-coding and Coding DNA Sequences. Journal of Theoretical Biology 202:4, pages 273-282.
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Sergey V. Buldyrev, Nikolay V. Dokholyan, Shlomo Havlin, H.Eugene Stanley & Rachel H.R. Stanley. (1999) Expansion of tandem repeats and oligomer clustering in coding and noncoding DNA sequences. Physica A: Statistical Mechanics and its Applications 273:1-2, pages 19-32.
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Jens Horn, Anja Dietz‐Schmidt, Ilse Zündorf, Jérôme Garin, Theodor Dingermann & Thomas Winckler. (2001) A Dictyostelium protein binds to distinct oligo(dA)·oligo(dT) DNA sequences in the C‐module of the retrotransposable element DRE . European Journal of Biochemistry 265:1, pages 441-448.
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Nikolay V. Dokholyan, Sergey V. Buldyrev, Shlomo Havlin & H. Eugene Stanley. (1997) Distribution of Base Pair Repeats in Coding and Noncoding DNA Sequences. Physical Review Letters 79:25, pages 5182-5185.
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J. W. Bizzaro, Kenneth A. Marx & R. D. Blake. (2011) Comparison of Experimental with Theoretical Melting of the Yeast Genome and Individual Yeast Chromosome Denaturation Mapping Using the Program Meltsim. MRS Proceedings 489.
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Kenneth A. Marx, J. W. Bizzaro, Iman Assil & R. D. Blake. (2011) Comparison of Experimental and Theoretical Melting Behavior of DNA. MRS Proceedings 463.
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