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Journal of Biomolecular Structure and Dynamics Volume 12, 1994 - Issue 1
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Original Articles

Binding of Echinomycin to d(GCGC)2 and d(CCGG)2: Distinct Stacking Interactions Dictate the Sequence-Dependent Formation of Hoogsteen Base Pairs

José Gallego Departamento de Fisiología y Farmacologia, Universidad de Alcalá de Henares, 28871, Madrid, Spain
,
F. J. Luque Departament de Farmàcia (Unitat Físico-Química) Facultat de Farmácia, Universitat de Barcelona, 08028, Barcelona, Spain
,
Modesto Orozco Departament de Bioquímica i Fisiologia Facultat de Química, Universitat de Barcelona, 08028, Barcelona, Spain
&
Federico Gago Departamento de Fisiología y Farmacologia, Universidad de Alcalá de Henares, 28871, Madrid, Spain
Pages 111-129 | Received 05 May 1994, Published online: 21 May 2012

Citations (15)

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Jiří Kovanda, Eduard Kejnovský, Luboš Arnold & Jaroslav Kypr. (1996) UV Light-Induced Crosslinking of Short DNA Duplex Strands: Nucleotide Sequence Preferences and a Prominent Role of the Duplex Ends. Journal of Biomolecular Structure and Dynamics 14:1, pages 57-65.
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Articles from other publishers (14)

Yu Xu, James McSally, Ioan Andricioaei & Hashim M. Al-Hashimi. (2018) Modulation of Hoogsteen dynamics on DNA recognition. Nature Communications 9:1.
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Federico Gago. 2018. DNA-targeting Molecules as Therapeutic Agents. DNA-targeting Molecules as Therapeutic Agents 96 143 .
Evgenia N. Nikolova, Huiqing Zhou, Federico L. Gottardo, Heidi S. Alvey, Isaac J. Kimsey & Hashim M. Al‐Hashimi. (2013) A historical account of hoogsteen base‐pairs in duplex DNA. Biopolymers 99:12, pages 955-968.
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Thérèse E. Malliavin, Jocelyne Gau, Karim Snoussi & Jean-Louis Leroy. (2003) Stability of the I-motif Structure Is Related to the Interactions between Phosphodiester Backbones. Biophysical Journal 84:6, pages 3838-3847.
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Thérèse E. Malliavin, Karim Snoussi & Jean‐Louis Leroy. (2002) The NMR structure of [Xd(C2)]4 investigated by molecular dynamics simulations. Magnetic Resonance in Chemistry 41:1, pages 18-25.
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Stephen D. G. Crow, Christian Bailly, Christiane Garbay-Jaureguiberry, Bernard Roques, Barbara Ramsay Shaw & Michael J. Waring. (2002) DNA Sequence Recognition by the Antitumor Drug Ditercalinium. Biochemistry 41:27, pages 8672-8682.
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José Gallego & Brian R. Reid. (1999) Solution Structure and Dynamics of a Complex between DNA and the Antitumor Bisnaphthalimide LU-79553:  Intercalated Ring Flipping on the Millisecond Time Scale , . Biochemistry 38:46, pages 15104-15115.
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Andrés Molina, Juan J. Vaquero, José L. Garcia-Navio, Julio Alvarez-Builla, Beatriz de Pascual-Teresa, Federico Gago & María M. Rodrigo. (1999) Novel DNA Intercalators Based on the Pyridazino[1‘,6‘:1,2]pyrido[4,3- b ]indol-5-inium System . The Journal of Organic Chemistry 64:11, pages 3907-3915.
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José Gallego, Elisabeth B. Golden, David E. Stanley & Brian R. Reid. (1999) The Folding of Centromeric DNA Strands into Intercalated Structures: A Physicochemical and Computational Study. Journal of Molecular Biology 285:3, pages 1039-1052.
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Federico Gago. (1998) Stacking Interactions and Intercalative DNA Binding. Methods 14:3, pages 277-292.
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José Gallego, Shan-Ho Chou & Brian R Reid. (1997) Centromeric pyrimidine strands fold into an intercalated motif by forming a double hairpin with a Novel T:G:G:T tetrad: solution structure of the d(TCCCGTTTCCA) dimer 1 1Edited by I Tinoco. Journal of Molecular Biology 273:4, pages 840-856.
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Andrés Molina, Juan J. Vaquero, JoséL. García-Navio, Julio Alvarez-Builla, María M. Rodrigo, Obis Castaño & JoséL. de Andres. (1996) Azonia derivatives of the γ-carboline system. A new class of DNA intercalators. Bioorganic & Medicinal Chemistry Letters 6:13, pages 1453-1456.
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Andrés Molina, Juan J. Vaquero, José L. Garcia-Navio, Julio Alvarez-Builla, Beatriz de Pascual-Teresa, Federico Gago, María M. Rodrigo & Milagros Ballesteros. (1996) Synthesis and DNA Binding Properties of γ-Carbolinium Derivatives and Benzologues. The Journal of Organic Chemistry 61:16, pages 5587-5599.
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Beatriz de Pascual-Teresa, José Gallego, Angel R. Ortiz & Federico Gago. (1996) Molecular Dynamics Simulations of the Bis-Intercalated Complexes of Ditercalinium and Flexi-Di with the Hexanucleotide d(GCGCGC) 2 :  Theoretical Analysis of the Interaction and Rationale for the Sequence Binding Specificity . Journal of Medicinal Chemistry 39:24, pages 4810-4824.
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