Binding of Echinomycin to d(GCGC)₂ and d(CCGG)₂: Distinct Stacking Interactions Dictate the Sequence-Dependent Formation of Hoogsteen Base Pairs

References and Footnotes

• Portugal , J. 1989 . Trends Pharmacol Sci. , 14 : 127 – 130 .
   Google Scholar
• Sayers , E. W. and Waring , M. J. 1993 . Biochemistry , 32 : 9094 – 9107 .
   PubMed Web of Science ®Google Scholar
• Waring , M. J. 1990 . in Molecular Basis of Specificitiy in Nucleic Acid-Drug Interactions Edited by: Pullman , B. and Jortner , J. 225 – 245 . Dordrecht : Kluwer Academic Publishers .
   Google Scholar
• Hoogsteen , K. 1959 . Acta. Cryst. , 2 : 822 – 823 .
   Google Scholar
• Wang , A. H-J. , Ughetto , G. , Quigley , G. J. , Hakoshima , T. , van der Marel , G. A. , van Boom , J. H. and Rich , A. 1984 . Science , 225 : 1115 – 1121 .
   PubMed Web of Science ®Google Scholar
• Ughetto , G. , Wang , A. H-J. , Quigley , G. J. , van der Marel , G. A. , van Boom , J. H. and Rich , A. 1985 . Nucleic Acids Res. , 13 : 2305 – 2323 .
   PubMed Web of Science ®Google Scholar
• Quigley , G. J. , Ughetto , G. , van der Marel , G. A. , van Boom , J. H. , Wang , A. H-J. and Rich , A. 1986 . Science , 232 : 1255 – 1258 .
   PubMed Web of Science ®Google Scholar
• Wang , A. H-J. , Ughetto , G. , Quigley , G. J. and Rich , A. 1986 . J. Biomol. Struct. Dyn. , 4 : 319 – 342 .
   PubMed Web of Science ®Google Scholar
• Gao , X. and Patel , D. J. 1988 . Biochemistry , 21 : 1744 – 1751 .
   Google Scholar
• Gao , X. and Patel , D. J. 1989 . Quart. Rev. Biophys. , 22 : 93 – 138 .
   PubMedGoogle Scholar
• Gilbert , D. E. and Feigon , J. 1991 . Biochemistry , 30 : 2483 – 2494 .
   PubMed Web of Science ®Google Scholar
• Gilbert , D. E. and Feigon , J. 1992 . Nucleic Acids Res. , 20 : 2411 – 2420 .
   PubMedGoogle Scholar
• Seaman , F. C. and Hurley , L. 1993 . Biochemistry , 32 : 12577 – 12585 .
   PubMed Web of Science ®Google Scholar
• Mendel , D. and Dervan , P. B. 1987 . Proc. Natl. Acad. Sci. USA , 84 : 910 – 914 .
   PubMedGoogle Scholar
• Portugal , J. , Fox , K. R. , McLean , M. J. , Richenberg , J. L. and Waring , M. J. 1988 . Nucleic Acids Res. , 16 : 3655 – 3670 .
   PubMedGoogle Scholar
• McLean , J. M. , Seela , F. and Waring , M. J. 1989 . Proc. Natl. Acad. Sci. USA , 86 : 9687 – 9691 .
   PubMed Web of Science ®Google Scholar
• Singh , U. C. , Pattabiraman , N. , Langridge , R. and Kollman , P. A. 1986 . Proc. Natl. Acad. Sci. USA , 83 : 6402 – 6406 .
   PubMed Web of Science ®Google Scholar
• Gallego , J. , Ortiz , A. R. and Gago , F. 1993 . J. Med. Chem. , 36 : 1548 – 1561 .
   PubMedGoogle Scholar
• 1993 . DNA-drug interactions held at the Fundación Juan March, Madrid A preliminary account of these findings was presented at the Workshop on (15–17 November
   Google Scholar
• Pearlman , D. A. , Case , D. A. , Caldwell , J. , Seibel , G. , Singh , U. C. , Weiner , P. and Kollman , P. A. 1991 . AMBER version 4.0 Department of Pharmaceutical Chemistry, University of California, San Francisco
   Google Scholar
• 1992 . 92121 – 2777 . Insight-II, version 2.1.0 Biosym Technologies. 9685 Scranton Road, San Diego, CA
   Google Scholar
• Weiner , S. J. , Kollman , P. A. , Nguyen , D. T. and Case , D. A. 1986 . J. Comp. Chem. , 7 : 230 – 252 .
   PubMed Web of Science ®Google Scholar
• Jorgensen , W. L. , Chandrasekhar , J. and Madura , J. D. 1983 . J. Chem. Phys. , 79 : 926 – 935 .
   Web of Science ®Google Scholar
• Aqvist , J. 1990 . J. Phys. Chem. , 94 : 8021 – 8024 .
   Web of Science ®Google Scholar
• Hariharan , P. C. and Pople , J. A. 1972 . Chem. Phys. Lett. , 16 : 217 – 219 .
   Web of Science ®Google Scholar
• Singh , U. C. and Kollman , P. A. 1984 . J. Comp. Chem. , 5 : 129 – 145 .
   Web of Science ®Google Scholar
• Momany , F. A. 1978 . J. Phys. Chem. , 82 : 592 – 601 .
   Web of Science ®Google Scholar
• Luque , F. J. , Orozco , M. , Illas , F. and Rubio , J. 1991 . J. Am. Chem. Soc. , 113 : 5203 – 5211 .
   Google Scholar
• Orozco , M. , Jorgensen , W. L. and Luque , F. J. 1993 . J. Comp. Chem. , 14 : 1498 – 1503 .
   Web of Science ®Google Scholar
• Connolly , M. L. 1983 . J. Appl. Crystal. , 16 : 548 – 558 .
   Web of Science ®Google Scholar
• Orozco , M. and Luque , F. J. 1990 . J. Comp.-Aided Mol. Design , 4 : 411 – 426 .
   PubMedGoogle Scholar
• Gallego , J. , Luque , F. J. , Orozco , M. , Burgos , C. , Alvarez-Builla , J. , Rodrigo , M. M. and Gago , F. 1994 . J. Med. Chem. , 37 : 1602 – 1609 .
   PubMedGoogle Scholar
• Addess , K. J. , Sinsheimer , J. S. and Feigon , J. 1993 . Biochemistry , 32 : 2498 – 2508 .
   PubMed Web of Science ®Google Scholar
• Bernstein , F. C. , Koetzle , T. F. , Williams , G. J.B. , Meyer , E. F. Jr , Brice , M. D. , Rodgers , J. R. , Kennard , O. , Shimanouchi , T. and Tasumi , M. 1977 . J. Mol. Biol. , 112 : 535 – 542 .
   PubMed Web of Science ®Google Scholar
• van Gunsteren , W. F. , Berendsen , H. J.C. , Geurtsen , R. G. and Zwinderman , H. R.J. 1986 . Ann. N. Y. Acad. Sci. , 482 : 287 – 303 .
   PubMedGoogle Scholar
• Berendsen , H. J.C. , Postma , J. P.M. , van Gunsteren , W. F. , DiNola , A. and Haak , J. R. 1984 . Chem. Phys. , 81 : 3684 – 3690 .
   Web of Science ®Google Scholar
• Ryckaert , J. P. , Ciccotti , G. and Berendsen , H. J.C. 1977 . J. Comp. Phys. , 23 : 327 – 341 .
   Web of Science ®Google Scholar
• Gago , F. , Reynolds , C. A. and Richards , W. G. 1989 . Molec. Pharmacol. , 35 : 232 – 241 .
   PubMed Web of Science ®Google Scholar
• Alfredson , T. V. and Maki , A. H. 1990 . Biochemistry , 29 : 9052 – 9064 .
   PubMedGoogle Scholar
• Marchand , C. , Bailly , C. , McLean , M. , Moroney , S. E. and Waring , M. J. 1992 . Nucleic Acids Res. , 20 : 5601 – 5606 .
   PubMed Web of Science ®Google Scholar
• Kalman , J. R. , Blake , T. J. , Williams , D. H. , Feeney , J. and Roberts , G. C.K. 1979 . J. Chem. Soc. Perkin Trans. I , : 1313 – 1321 .
   Google Scholar
• Ornstein , R. L. , Rein , R. , Breen , D. L. and MacElroy , R. D. 1978 . Biopolymers , 17 : 2341 – 2360 .
   PubMed Web of Science ®Google Scholar
• Bailly , C. , Marchand , C. and Waring , M. J. 1993 . J. Am. Chem. Soc. , 115 : 3784 – 3785 .
   Web of Science ®Google Scholar
• Kennard , O. and Hunter , W. N. 1991 . Angew. Chem. Int. Ed. Engl. , 30 : 1254 – 1277 .
   Web of Science ®Google Scholar
• Hunter , C. A. 1993 . Mol. Biol. , 230 : 1025 – 1054 .
   Google Scholar
• Bugg , C. E. , Thomas , J. M. , Sundaralingam , M. and Rao , S. T. 1971 . Biopolymers , 10 : 175 – 219 .
   PubMed Web of Science ®Google Scholar
• Minguez , J. M. , Gandásegui , T. , Vaquero , J. J. , Alvarez-Builla , J. , García-Navío , J. L. , Gago , F. , Ortiz , A. R. , Gómez-Sal , P. , Torres , R. and Rodrigo , M. M. 1993 . J. Org. Chem. , 58 : 6030 – 6037 .
   Google Scholar