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Journal of Biomolecular Structure and Dynamics Volume 14, 1996 - Issue 1
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Original Articles

Design of Sequence-Specific DNA Binding Ligands That Use a Two-Stranded Peptide Motif for DNA Sequence Recognition

V. A. Nikolaev Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 117984, Russia
,
S. L. Grokhovsky Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 117984, Russia
,
A. N. Surovaya Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 117984, Russia
,
T. A. Leinsoo Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 117984, Russia
,
N. Yu. Sidonova Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 117984, Russia
,
A. S. Zasedatelev Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 117984, Russia
,
A. L. Zhuze Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 117984, Russia
,
G. A. Strahan Department of Pharmaceutical Chemistry, University of California, San Francisco, CA, 94143, USA
,
R. H. Shafer Department of Pharmaceutical Chemistry, University of California, San Francisco, CA, 94143, USA
&
G. V. Gursky Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 117984, Russia
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Pages 31-47 | Received 07 Jun 1996, Published online: 21 May 2012

Citations (22)

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E.D. Moiseeva, N.P. Bazhulina, Y.G. Gursky, S.L. Grokhovsky, A.N. Surovaya & G.V. Gursky. (2017) Targeting Holliday junctions by origin DNA-binding protein of herpes simplex virus type 1. Journal of Biomolecular Structure and Dynamics 35:4, pages 704-723.
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N.P. Bazhulina, A.N. Surovaya, Y.G. Gursky, V.L. Andronova, E.D. Moiseeva, А.M. Nikitin, M.V. Golovkin, G.А. Galegov, S.L. Grokhovsky & G.V. Gursky. (2014) Complex of the herpes simplex virus type 1 origin binding protein UL9 with DNA as a platform for the design of a new type of antiviral drugs. Journal of Biomolecular Structure and Dynamics 32:9, pages 1456-1473.
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N.P. Bazhulina, A.M. Nikitin, S.A. Rodin, A.N. Surovaya, Yu.V. Kravatsky, V.F. Pismensky, V.S. Archipova, R. Martin & G.V. Gursky. (2009) Binding of Hoechst 33258 and its Derivatives to DNA. Journal of Biomolecular Structure and Dynamics 26:6, pages 701-718.
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Yu.D. Nechipurenko, A.L. Mikheikin, S.A. Streltsov, A.S. Zasedatelev & I.R. Nabiev. (2001) Mixed Mode of Ligand-DNA Binding Results in S-Shaped Binding Curves. Journal of Biomolecular Structure and Dynamics 18:5, pages 703-708.
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A.N. Surovaya, G. Burckhardt, S.L. Grokhovsky, E. Birch-Hirschfeld, A.M. Nikitin, H. Fritzsche, Ch. Zimmer & G.V. Gursky. (2001) Binding of Bis-linked Netropsin Derivatives in the Parallel-Stranded Hairpin Form to DNA. Journal of Biomolecular Structure and Dynamics 18:5, pages 689-701.
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A.L. Mikheikin, A.L. Zhuze & A.S. Zasedatelev. (2000) Binding of Symmetrical Cyanine Dyes into the DNA Minor Groove. Journal of Biomolecular Structure and Dynamics 18:1, pages 59-72.
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AnnaN. Surovaya, Gunther Burckhardt, SergeiL. Grokhovsky, Eckhard Birch-Hirschfeld, GeorgiiV. Gursky & Christoph Zimmer. (1997) Hairpin Polyamides That use Parallel and Antiparallel Side-by-Side Peptide Motifs in Binding to DNA. Journal of Biomolecular Structure and Dynamics 14:5, pages 595-606.
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Articles from other publishers (15)

A. N. Surovaya, N. P. Bazhulina, S. Yu. Lepehina, V. L. Andronova, G. A. Galegov, E. D. Moiseeva, S. L. Grokhovsky & G. V. Gursky. (2016) Interaction of a dimeric distamycin analog with poly(dA)poly(dT), poly[d(A–T)]poly[d(A–T)], and duplex O23 at the origin of replication of the herpes simplex virus. Biophysics 61:2, pages 227-232.
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Yu. D. Nechipurenko. (2014) Analysis of binding of ligands to nucleic acids. Biophysics 59:1, pages 6-27.
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A. N. Surovaya, S. L. Grokhovskii, N. P. Bazhulina & G. V. Gurskii. (2009) DNA-Binding activity of bis-netropsin containing a cis-diaminoplatinum group between two netropsin fragments. Biophysics 53:5, pages 344-351.
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Georgy Gursky, Alexei Nikitin, Anna Surovaya, Sergey Grokhovsky, Valeria Andronova & Georgy Galegov. 2008. Nanomaterials for Application in Medicine and Biology. Nanomaterials for Application in Medicine and Biology 17 28 .
V. L. Andronova, S. L. Grokhovskii, A. N. Surovaya, G. V. Gurskii & G. A. Galegov. (2007) Effect of dimeric derivatives of netropsin and their combinations with acyclovir on herpes simplex virus type 1 infection in mice. Doklady Biochemistry and Biophysics 413:1, pages 79-82.
Crossref
V. L. Andronova, S. L. Grokhovskii, A. N. Surovaya, G. V. Gurskii & G. A. Galegov. (2004) DNA-binding and antiviral activity of bis-netropsins containing clusters of lysine residues in the N-terminal region. Doklady Biochemistry and Biophysics 399:1-6, pages 386-391.
Crossref
Samia Far, Alain Kossanyi, Catherine Verchère‐Béaur, Nohad Gresh, Eliane Taillandier & Martine Perrée‐Fauvet. (2004) Bis‐ and Tris‐DNA Intercalating Porphyrins Designed to Target the Major Groove: Synthesis of Acridylbis‐arginyl‐porphyrins, Molecular Modelling of Their DNA Complexes, and Experimental Tests. European Journal of Organic Chemistry 2004:8, pages 1781-1797.
Crossref
Hans‐Christoph Gallmeier & Burkhard König. (2003) Heteroaromatic Oligoamides with dDNA Affinity. European Journal of Organic Chemistry 2003:18, pages 3473-3483.
Crossref
B.S.Praveen Reddy, S.Murari Sondhi & J.William Lown. (1999) Synthetic DNA minor groove-binding drugs☆☆Editor's Note: Figures 1–99 appear throughout text. Structures 1–271 appear together at the end of this article, although Structures 25, 111–147, 162–181, 182–188, and 241–255 also appear within Tables 1–5.. Pharmacology & Therapeutics 84:1, pages 1-111.
Crossref
L. Kittler, B. C. Baguley, G. Löber & M. J. Waring. (1999) Sequence-specific interactions of minor groove binders with restriction fragments of cDNAs for H tau 40 protein and MAP kinase 2. A qualitative and quantitative footprinting study. Journal of Molecular Recognition 12:2, pages 121-130.
Crossref
S.L Grokhovsky, A.N Surovaya, G Burckhardt, V.F Pismensky, B.K Chernov, Ch Zimmer & G.V Gursky. (1998) DNA sequence recognition by bis-linked netropsin and distamycin derivatives. FEBS Letters 439:3, pages 346-350.
Crossref
Christian Bailly & Jonathan B. Chaires. (1998) Sequence-Specific DNA Minor Groove Binders. Design and Synthesis of Netropsin and Distamycin Analogues. Bioconjugate Chemistry 9:5, pages 513-538.
Crossref
Shahla Mohammadi, Martine Perrée-Fauvet, Nohad Gresh, Karine Hillairet & Eliane Taillandier. (1998) Joint Molecular Modeling and Spectroscopic Studies of DNA Complexes of a Bis(arginyl) Conjugate of a Tricationic Porphyrin Designed to Target the Major Groove. Biochemistry 37:17, pages 6165-6178.
Crossref
Christian Bailly. 1998. 97 156 .
Peter E. Nielsen. (2006) Design of Sequence‐Specific DNA‐Binding Ligands. Chemistry – A European Journal 3:4, pages 505-508.
Crossref

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