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Journal of Biomolecular Structure and Dynamics Volume 16, 1998 - Issue 3
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Original Articles

Modeling the Mechanics of a DNA Oligomer

Anne Lebrun Laboratoire de Biochimie Théorique, Institut de Biologie Physico-Chimique, 13, rue Pierre et Marie Curie, 75005, Paris, France
&
Richard Lavery Laboratoire de Biochimie Théorique, Institut de Biologie Physico-Chimique, 13, rue Pierre et Marie Curie, 75005, Paris, France
Pages 593-604 | Received 21 Aug 1998, Published online: 21 May 2012

Citations (20)

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Read on this site (2)

L. V. YAKUSHEVICH. (2011) BIOMECHANICS OF DNA: ROTATIONAL OSCILLATIONS OF BASES. Journal of Nonlinear Mathematical Physics 18:sup2, pages 449-461.
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Sarah Anne Harris. (2004) The physics of DNA stretching. Contemporary Physics 45:1, pages 11-30.
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Articles from other publishers (18)

Mohammad Poursina & Kurt S. Anderson. (2017) Optimization problem and efficient partitioning algorithm for transitions to finer-scale models in adaptive resolution simulation of articulated biopolymers. Multibody System Dynamics 42:1, pages 97-117.
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Nilesh K. Banavali. (2013) Partial Base Flipping Is Sufficient for Strand Slippage near DNA Duplex Termini. Journal of the American Chemical Society 135:22, pages 8274-8282.
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Mohammad Poursina & Kurt S. Anderson. (2013) Canonical ensemble simulation of biopolymers using a coarse-grained articulated generalized divide-and-conquer scheme. Computer Physics Communications 184:3, pages 652-660.
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Mohammad Poursina & Kurt S. Anderson. 2013. Multibody Dynamics. Multibody Dynamics 147 172 .
L. V. Yakushevich. (2011) Biomechanics of DNA: rotational oscillations of bases. Computer Research and Modeling 3:3, pages 319-328.
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Alexander Balaeff, Stephen L. Craig & David N. Beratan. (2011) B-DNA to Zip-DNA: Simulating a DNA Transition to a Novel Structure with Enhanced Charge-Transport Characteristics. The Journal of Physical Chemistry A 115:34, pages 9377-9391.
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Mohammad Poursina, Kishor D. Bhalerao, Samuel C. Flores, Kurt S. Anderson & Alain Laederach. 2011. Computer Methods, Part C. Computer Methods, Part C 73 98 .
Julia Morfill, Ferdinand Kühner, Kerstin Blank, Robert A. Lugmaier, Julia Sedlmair & Hermann E. Gaub. (2007) B-S Transition in Short Oligonucleotides. Biophysical Journal 93:7, pages 2400-2409.
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Jiun-Shyan Chen, Hailong Teng & Aiichiro Nakano. (2007) Wavelet-based multi-scale coarse graining approach for DNA molecules. Finite Elements in Analysis and Design 43:5, pages 346-360.
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S. Thiyagarajan, S.S. Rajan & N. Gautham. (2006) Effect of DNA structural flexibility on promoter strength—molecular dynamics studies of E. coli promoter sequences. Biochemical and Biophysical Research Communications 341:2, pages 557-566.
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Emmanuel Giudice & Richard Lavery. (2002) Simulations of Nucleic Acids and Their Complexes. Accounts of Chemical Research 35:6, pages 350-357.
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Richard Lavery, Anne Lebrun, Jean-François Allemand, David Bensimon & Vincent Croquette. (2002) Structure and mechanics of single biomolecules: experiment and simulation. Journal of Physics: Condensed Matter 14:14, pages R383-R414.
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Robert J. Greenall, Colin Nave & Watson Fuller. (2001) X-ray diffraction from DNA fibres under tension. Journal of Molecular Biology 305:4, pages 669-672.
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Thomas E. Cheatham IIIPeter A. Kollman. (2000) Molecular Dynamics Simulation of Nucleic Acids. Annual Review of Physical Chemistry 51:1, pages 435-471.
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Simona Cocco & Rémi Monasson. (2000) Theoretical study of collective modes in DNA at ambient temperature. The Journal of Chemical Physics 112:22, pages 10017-10033.
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Wilma K Olson & Victor B Zhurkin. (2000) Modeling DNA deformations. Current Opinion in Structural Biology 10:3, pages 286-297.
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Filip Lankaš, Jiřı́ Šponer, Pavel Hobza & Jörg Langowski. (2000) Sequence-dependent elastic properties of DNA 1 1Edited by I. Tinoco. Journal of Molecular Biology 299:3, pages 695-709.
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Remo Rohs, Catherine Etchebest & Richard Lavery. (1999) Unraveling Proteins: A Molecular Mechanics Study. Biophysical Journal 76:5, pages 2760-2768.
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