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Journal of Biomolecular Structure and Dynamics Volume 16, 1998 - Issue 3
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Original Articles

Sequence-Dependent Binding of Metal Ion to DNA Oligomeres. A Comparison of Molecular Electrostatic Potentials with NMR Data

Michael Montrel Institute of Theoretical and Experimental Biophysics, Russian Academy of Sciences, 142292, Pushchino, Moscow Region, Russia
,
Vasily P. Chuprina Institute of Mathematical Problems of Biology, Russian Academy of Sciences, Pushchino, Moscow Region, Russia; Bijvoet Center of Biomolecular Research, Utrecht, Netherlands
,
Valery I. Poltev Institute of Theoretical and Experimental Biophysics, Russian Academy of Sciences, 142292, Pushchino, Moscow Region, Russia; Facultad de ciencias fisico matematicas, Benemerito universidad autonomo de Puebla, Mexico
,
Willy Nerdal Department of Chemistry, University of Bergen, N-5007, Bergen, Norway
&
Einar Sletten Department of Chemistry, University of Bergen, N-5007, Bergen, Norway
Pages 631-637 | Received 07 Sep 1998, Published online: 21 May 2012

Citations (17)

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Jiří Šponer, JaroslavV. Burda, Jerzy Leszczynski & Pavel Hobzal. (1999) Interactions of Hydrated IIa and IIb Group Metal Cations with Thioguanine-Cytosine DNA Base Pair: Ab initio and Density Functional Theory Investigation of Polarization Effects, Differences Among Cations, and Flexibility of the Cation Hydration Shell. Journal of Biomolecular Structure and Dynamics 17:1, pages 61-77.
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Articles from other publishers (16)

Caixia Hou & Oleg V. Tsodikov. (2019) Utilizing guanine-coordinated Zn 2+ ions to determine DNA crystal structures by single-wavelength anomalous diffraction . Acta Crystallographica Section D Structural Biology 75:1, pages 32-40.
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Mahmoud Sharawy & Styliani Consta. (2018) Effect of the chemical environment of the DNA guanine quadruplex on the free energy of binding of Na and K ions. The Journal of Chemical Physics 149:22.
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Vangelis George Kanellis & Cristobal G. dos Remedios. (2018) A review of heavy metal cation binding to deoxyribonucleic acids for the creation of chemical sensors. Biophysical Reviews 10:5, pages 1401-1414.
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Guillem Portella, Markus W. Germann, Nicholas V. Hud & Modesto Orozco. (2014) MD and NMR Analyses of Choline and TMA Binding to Duplex DNA: On the Origins of Aberrant Sequence-Dependent Stability by Alkyl Cations in Aqueous and Water-Free Solvents. Journal of the American Chemical Society 136:8, pages 3075-3086.
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Robert C. Harris, Travis Mackoy, Ana Carolina Dantas Machado, Darui Xu, Remo Rohs & Marcia Oliveira Fenley. 2012. Innovations in Biomolecular Modeling and Simulations. Innovations in Biomolecular Modeling and Simulations 53 80 .
Nicholas V. Hud & Aaron E. Engelhart. 2008. Nucleic Acid–Metal Ion Interactions. Nucleic Acid–Metal Ion Interactions 75 117 .
Sergei A. Kazakov & Sidney M. Hecht. 2006. Encyclopedia of Inorganic Chemistry. Encyclopedia of Inorganic Chemistry.
Sergei A. Kazakov & Sidney M. Hecht. 2012. Encyclopedia of Inorganic and Bioinorganic Chemistry. Encyclopedia of Inorganic and Bioinorganic Chemistry.
Nicholas V. Hud & Janez Plavec. (2003) A unified model for the origin of DNA sequence-directed curvature. Biopolymers 69:1, pages 144-158.
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Akimitsu Okamoto, Keiichiro Kanatani, Toshiji Taiji & Isao Saito. (2003) 15 N NMR Study on Site-Selective Binding of Metal Ions to Guanine Runs in DNA:  A Good Correlation with HOMO Distribution . Journal of the American Chemical Society 125:5, pages 1172-1173.
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Priyamvada Rai, Timothy D. Cole, David E. Wemmer & Stuart Linn. (2001) Localization of Fe2+ at an RTGR sequence within a DNA duplex explains preferential cleavage by Fe2+ and H2O211Edited by M. F. Summers. Journal of Molecular Biology 312:5, pages 1089-1101.
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Bozidar Jerkovic & Philip H. Bolton. (2001) Magnesium Increases the Curvature of Duplex DNA That Contains dA Tracts. Biochemistry 40:31, pages 9406-9411.
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Kazuhiko Nakatani, Takahiro Matsuno, Kaoru Adachi, Shinya Hagihara & Isao Saito. (2001) Selective Intercalation of Charge Neutral Intercalators into GG and CG Steps:  Implication of HOMO-LUMO Interaction for Sequence-Selective Drug Intercalation into DNA. Journal of the American Chemical Society 123:24, pages 5695-5702.
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Mark G Caprara, Christopher A Myers & Alan M Lambowitz. (2001) Interaction of the Neurospora crassa mitochondrial tyrosyl-tRNA synthetase (CYT-18 protein) with the group I intron P4-P6 domain. thermodynamic analysis and the role of metal ions1 1Edited by D. E. Draper. Journal of Molecular Biology 308:2, pages 165-190.
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Robert L. Hettich. (2001) Investigating the effect of transition metal ion oxidation state on oligodeoxyribonucleotide binding by matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry. International Journal of Mass Spectrometry 204:1-3, pages 55-75.
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Nicola G.A Abrescia, Lucy Malinina & Juan A Subirana. (1999) Stacking interaction of guanine with netropsin in the minor groove of d(CGTATATACG) 2 1 1Edited by A. Klug. Journal of Molecular Biology 294:3, pages 657-666.
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