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Journal of Biomolecular Structure and Dynamics Volume 18, 2001 - Issue 6
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Original Articles

The First Example of a Hoogsteen Basepaired DNA Duplex in Dynamic Equilibrium with a Watson-Crick Basepaired Duplex—A Structural (NMR), Kinetic and Thermodynamic Study

J. Isaksson Department of Bioorganic Chemistry, Biomedical Centre, University of Uppsala, Box 581, Sweden
,
E. Zamaratski Department of Bioorganic Chemistry, Biomedical Centre, University of Uppsala, Box 581, Sweden
,
T. V. Maltseva Department of Bioorganic Chemistry, Biomedical Centre, University of Uppsala, Box 581, Sweden
,
P. Agback Department of Bioorganic Chemistry, Biomedical Centre, University of Uppsala, Box 581, Sweden
,
A. Kumar Department of Bioorganic Chemistry, Biomedical Centre, University of Uppsala, Box 581, Sweden
&
J. Chattopadhyaya Department of Bioorganic Chemistry, Biomedical Centre, University of Uppsala, Box 581, Sweden
Pages 783-806 | Received 22 Dec 2000, Published online: 15 May 2012

Citations (11)

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J. Isaksson, O. Plashkevych, P.I. Pradeepkumar, S. Chatterjee, J. Barman, W. Pathmasiri, P. Shrivastava, C. Petit & J. Chattopadhyaya. (2005) Oxetane Locked Thymidine in the Dickerson-Drew Dodecamer Causes Local Base Pairing Distortions—An NMR Structure and Hydration Study. Journal of Biomolecular Structure and Dynamics 23:3, pages 299-330.
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Articles from other publishers (10)

Jocelyne Vreede, Alberto Pérez de Alba Ortíz, Peter G Bolhuis & David W H Swenson. (2019) Atomistic insight into the kinetic pathways for Watson–Crick to Hoogsteen transitions in DNA. Nucleic Acids Research 47:21, pages 11069-11076.
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Atul Rangadurai, Eric S. Szymaski, Isaac J. Kimsey, Honglue Shi & Hashim M. Al-Hashimi. (2019) Characterizing micro-to-millisecond chemical exchange in nucleic acids using off-resonance R1ρ relaxation dispersion. Progress in Nuclear Magnetic Resonance Spectroscopy 112-113, pages 55-102.
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Debayan Chakraborty & David J. Wales. (2017) Energy Landscape and Pathways for Transitions between Watson–Crick and Hoogsteen Base Pairing in DNA. The Journal of Physical Chemistry Letters 9:1, pages 229-241.
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Evgenia N. Nikolova, Huiqing Zhou, Federico L. Gottardo, Heidi S. Alvey, Isaac J. Kimsey & Hashim M. Al‐Hashimi. (2013) A historical account of hoogsteen base‐pairs in duplex DNA. Biopolymers 99:12, pages 955-968.
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Zhou Xiao & Klaus Weisz. (2010) Base−Base Recognition of Nonionic Dinucleotide Analogues in an Apolar Environment Studied by Low-Temperature NMR Spectroscopy. Journal of the American Chemical Society 132:11, pages 3862-3869.
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Hunjoong Lee, Theodore Diavatis, Sanka Tennakoon, Peilin Yu & Xiaolian Gao. (2007) Solution structure of DNA/RNA hybrid duplex with C8-propynyl 2′-deoxyadenosine modifications: Implication of RNase H and DNA/RNA duplex interaction. Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression 1769:1, pages 20-28.
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Mark Lukin & Carlos de los Santos. (2006) NMR Structures of Damaged DNA. Chemical Reviews 106:2, pages 607-686.
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J. Isaksson, S. Acharya, J. Barman, P. Cheruku & J. Chattopadhyaya. (2004) Single-Stranded Adenine-Rich DNA and RNA Retain Structural Characteristics of Their Respective Double-Stranded Conformations and Show Directional Differences in Stacking Pattern. Biochemistry 43:51, pages 15996-16010.
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Nuria Escaja, Irene Gómez‐Pinto, Manuel Rico, Enrique Pedroso & Carlos González. (2003) Structures and Stabilities of Small DNA Dumbbells with Watson–Crick and Hoogsteen Base Pairs. ChemBioChem 4:7, pages 623-632.
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Nicola G. A. Abrescia, Andrew Thompson, Tam Huynh-Dinh & Juan A. Subirana. (2002) Crystal structure of an antiparallel DNA fragment with Hoogsteen base pairing. Proceedings of the National Academy of Sciences 99:5, pages 2806-2811.
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