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Alexander
M. Andrianov, Yuri
V. Kornoushenko, Ivan
V. Anishchenko, Vladimir
F. Eremin & Alexander
V. Tuzikov. (2013) Structural analysis of the envelope gp120 V3 loop for some HIV-1 variants circulating in the countries of Eastern Europe. Journal of Biomolecular Structure and Dynamics 31:7, pages 665-683.
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Karina
S. Matos, Elaine
F.F. da Cunha, Arlan da Silva Gonçalves, Alan Wilter, Kamil Kuča, Tanos
C.C. França & Teodorico
C. Ramalho. (2012) First principles calculations of thermodynamics and kinetic parameters and molecular dynamics simulations of acetylcholinesterase reactivators: can mouse data provide new insights into humans?. Journal of Biomolecular Structure and Dynamics 30:5, pages 546-558.
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AlineA. Oliveira, MagdalenaN. Rennó, César
A. S. de Matos, MorenaD. Bertuzzi, TeodoricoC. Ramalho, Carlos
A.M. Fraga & Tanos
C. C. França. (2011) Molecular Modeling Studies of Yersinia pestis Dihydrofolate Reductase. Journal of Biomolecular Structure and Dynamics 29:2, pages 351-367.
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Ping Li, Jian
Jun Tan, Ming Liu, Xiao
Yi Zhang, Wei
Zu Chen & Cun
Xin Wang. (2011) Insight into the Inhibitory Mechanism and Binding Mode Between D77 and HIV-1 Integrase by Molecular Modeling Methods. Journal of Biomolecular Structure and Dynamics 29:2, pages 311-323.
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Adeleh Divsalar, Ali
Akbar Saboury, Leila Ahadi, Elham Zemanatiyar, Hassan Mansouri-Torshizi, Davood Ajloo & RamaswamyH. Sarma. (2011) Biological Evaluation and Interaction of a Newly Designed Anti-cancer Pd(II) Complex and Human Serum Albumin. Journal of Biomolecular Structure and Dynamics 29:2, pages 283-296.
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Deok-Soo Kim, Chong-Min Kim, Chung-In Won, Jae-Kwan Kim, Joonghyun Ryu, Youngsong Cho, Changhee Lee & Jong Bhak. (2011) BetaDock: Shape-Priority Docking Method Based on Beta-Complex. Journal of Biomolecular Structure and Dynamics 29:1, pages 219-242.
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WilianA. Cortopassi, AlineA. Oliveira, AnaP. Guimarães, MagdalenaN. Rennó, AntonianaU. Krettli & Tanos
C.C. França. (2011) Docking Studies on the Binding of Quinoline Derivatives and Hematin to Plasmodium Falciparum Lactate Dehydrogenase. Journal of Biomolecular Structure and Dynamics 29:1, pages 207-218.
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Zahra Omidvar, Kazem Parivar, Hamideh Sanee, Zeinab Amiri-Tehranizadeh, Ali Baratian, Mohammad
Reza Saberi, Ahmad Asoodeh & Jamshidkhan Chamani. (2011) Investigations with Spectroscopy, Zeta Potential and Molecular Modeling of the Non-Cooperative Behaviour Between Cyclophosphamide Hydrochloride and Aspirin upon Interaction with Human Serum Albumin: Binary and Ternary Systems from the View Point of Multi-Drug Therapy. Journal of Biomolecular Structure and Dynamics 29:1, pages 181-206.
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Huan-Zhang Xie, Ling-Yun Liu, Ji-Xia Ren, Jian-Ping Zhou, Ren-Lin Zheng, Lin-Li Li & Sheng-Yong Yang. (2011) Pharmacophore Modeling and Hybrid Virtual Screening for the Discovery of Novel IκB Kinase 2 (IKK2) Inhibitors. Journal of Biomolecular Structure and Dynamics 29:1, pages 165-179.
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Sudipta Pal, Mili Das, Rahul Banerjee & Dipak Dasgupta. (2011) Biphasic Association of T7 RNA Polymerase and a Nucleotide Analogue, Cibacron Blue as a Model to Understand the Role of Initiating Nucleotide in the Mechanism of Enzyme Action. Journal of Biomolecular Structure and Dynamics 29:1, pages 153-164.
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JaysonF. Varughese & Yumin Li. (2011) Molecular Dynamics and Docking Studies on Cardiac Troponin C. Journal of Biomolecular Structure and Dynamics 29:1, pages 123-135.
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Kai-Wei Chang, Tsung-Ying Tsai, Kuan-Chung Chen, Shun-Chieh Yang, Hung-Jin Huang, Tung-Ti Chang, Mao-Feng Sun, Hsin-Yi Chen, Fuu-Jen Tsai & Calvin
Yu-Chian Chen. (2011) iSMART: An Integrated Cloud Computing Web Server for Traditional Chinese Medicine for Online Virtual Screening, de novo Evolution and Drug Design. Journal of Biomolecular Structure and Dynamics 29:1, pages 243-250.
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AlexeiN. Pankratov, OlgaM. Tsivileva, BorisI. Drevko & ValentinaE. Nikitina. (2011) Compounds of the 1,5-di(4-R-phenyl)-3-selenopentanediones-1,5 series interaction with the Basidiomycete Lentinula edodes, lectins: Computations and Experiment. Journal of Biomolecular Structure and Dynamics 28:6, pages 969-974.
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MikhailA. Livshits, DmitryN. Kaluzhny & ElviraE. Minyat. (2011) Melting of Model HIV-1 Stem-Loop 1 RNA Dimers Monitored by 2-Aminopurine Fluorescence. Journal of Biomolecular Structure and Dynamics 28:6, pages 939-947.
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MalihehS. Atri, AliA. Saboury, AliA. Moosavi-Movahedi, Bahram Goliaei, Yahya Sefidbakht, Hamid
Hadi Alijanvand, Ahmad Sharifzadeh & Amir Niasari-Naslaji. (2011) Structure and Stability Analysis of Cytotoxic Complex of Camel α-Lactalbumin and Unsaturated Fatty Acids Produced at High Temperature. Journal of Biomolecular Structure and Dynamics 28:6, pages 919-928.
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TeodoricoC. Ramalho, MelissaS. Caetano, Daniela Josa, GustavoP. Luz, ElisangelaA. Freitas & Elaine
F. F. da Cunha. (2011) Molecular Modeling of Mycobacterium Tuberculosis dUTpase: Docking and Catalytic Mechanism Studies. Journal of Biomolecular Structure and Dynamics 28:6, pages 907-917.
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Mao-Feng Sun, Tung-Ti Chang, Kai-Wei Chang, Hung-Jin Huang, Hsin-Yi Chen, Fuu-Jen Tsai, Jaung-Geng Lin & Calvin
Yu-Chia Chen. (2011) Blocking the DNA Repair System by Traditional Chinese Medicine?. Journal of Biomolecular Structure and Dynamics 28:6, pages 895-906.
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Yue Wang, Fuyong Bian, Shengrong Deng, Qiang Shi, Maofa Ge, Shu Wang, Xingkang Zhang & Sichuan Xu. (2011) The Key Residues of Active Sites on the Catalytic Fragment for Paclitaxel Interacting with Poly (ADP-Ribose) Polymerase. Journal of Biomolecular Structure and Dynamics 28:6, pages 881-893.
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Mei Zhuohang, Liu Ji & Yu Hongwei. (2011) Modeling of Transition State by Molecular Dynamics. Prediction of Catalytic Efficiency of the Mutants of Mandelate Racemase. Journal of Biomolecular Structure and Dynamics 28:6, pages 871-879.
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Alexander M Andrianov. (2011) Human immunodeficiency virus-1 gp120 V3 loop for anti-acquired immune deficiency syndrome drug discovery: computer-aided approaches to the problem solving. Expert Opinion on Drug Discovery 6:4, pages 419-435.
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Tung-Ti Chang, Mao-Feng Sun, Hsin-Yi Chen, Fuu-Jen Tsai, Mark Fisher, Jaung-Geng Lin & Calvin
Yu-Chian Chen. (2011) Screening from the World's Largest TCM Database Against H1N1 Virus. Journal of Biomolecular Structure and Dynamics 28:5, pages 773-786.
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Ankita Punetha, Karthi Shanmugam & Durai Sundar. (2011) Insight into the Enzyme-Inhibitor Interactions of the First Experimentally Determined Human Aromatase. Journal of Biomolecular Structure and Dynamics 28:5, pages 759-771.
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Raja Dey & Lin Chen. (2011) In Search of Allosteric Modulators of α7-nAChR by Solvent Density Guided Virtual Screening. Journal of Biomolecular Structure and Dynamics 28:5, pages 695-715.
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H. Vahedian-Movahed, M.R. Saberi & J. Chamani. (2011) Comparison of Binding Interactions of Lomefloxacin to Serum Albumin and Serum Transferrin by Resonance Light Scattering and Fluorescence Quenching Methods. Journal of Biomolecular Structure and Dynamics 28:4, pages 483-502.
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Chia-Hui Lin, Tung-Ti Chang, Mao-Feng Sun, Hsin-Yi Chen, Fuu-Jen Tsai, Kun-Lung Chang, Mark Fisher & Calvin
Yu-Chian Chen. (2011) Potent Inhibitor Design Against H1N1 Swine Influenza: Structure-based and Molecular Dynamics Analysis for M2 Inhibitors from Traditional Chinese Medicine Database. Journal of Biomolecular Structure and Dynamics 28:4, pages 471-482.
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AnaP. Guimarães, AlineA. Oliveira, Elaine
F. F. da Cunha, TeodoricoC. Ramalho & Tanos
C. C. França. (2011) Design of New Chemotherapeutics Against the Deadly Anthrax Disease. Docking and Molecular Dynamics studies of Inhibitors Containing Pyrrolidine and Riboamidrazone Rings on Nucleoside Hydrolase from Bacillus anthracis
. Journal of Biomolecular Structure and Dynamics 28:4, pages 455-469.
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Zhiwei Yang, Nan Wu, Yujie Fu, Gang Yang, Wei Wang, Yuangang Zu & Thomas Efferth. (2010) Anti-Infectious Bronchitis Virus (IBV) Activity of 1,8-cineole: Effect on Nucleocapsid (N) Protein. Journal of Biomolecular Structure and Dynamics 28:3, pages 323-330.
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Tung-Ti Chang, Hung-Jin Huang, Kuei-Jen Lee, Hsin
Wei Yu, Hsin-Yi Chen, Fuu-Jen Tsai, Mao-Feng Sun & Calvin
Yu-Chian Chen. (2010) Key Features for Designing Phosphodiesterase-5 Inhibitors. Journal of Biomolecular Structure and Dynamics 28:3, pages 309-321.
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Sashikanth Banappagari, Sharon Ronald & D.
Seetharama Satyanarayanajois. (2010) A Conformationally Constrained Peptidomimetic Binds to the Extracellular Region of HER2 Protein. Journal of Biomolecular Structure and Dynamics 28:3, pages 289-308.
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Amandeep
Kaur Kahlon, Sudeep Roy & Ashok Sharma. (2010) Molecular Docking Studies to Map the Binding Site of Squalene Synthase Inhibitors on Dehydrosqualene Synthase of Staphylococcus Aureus
. Journal of Biomolecular Structure and Dynamics 28:2, pages 201-210.
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Hong-Bin Shen & Kuo-Chen Chou. (2010) Virus-mPLoc: A Fusion Classifier for Viral Protein Subcellular Location Prediction by Incorporating Multiple Sites. Journal of Biomolecular Structure and Dynamics 28:2, pages 175-186.
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Hung-Jin Huang, Kuei-Jen Lee, Hsin
Wei Yu, Chien-Yu Chen, Chih-Ho Hsu, Hsin-Yi Chen, Fuu-Jen Tsai & Calvin
Yu-Chian Chen. (2010) Structure-Based and Ligand-Based Drug Design for HER 2 Receptor. Journal of Biomolecular Structure and Dynamics 28:1, pages 23-37.
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Calvin
Yu-Chian Chen. (2010) Virtual Screening and Drug Design for PDE-5 Receptor from Traditional Chinese Medicine Database. Journal of Biomolecular Structure and Dynamics 27:5, pages 627-640.
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AlexanderM. Andrianov & IvanV. Anishchenko. (2009) Computational Model of the HIV-1 Subtype A V3 Loop: Study on the Conformational Mobility for Structure-Based Anti-AIDS Drug Design. Journal of Biomolecular Structure and Dynamics 27:2, pages 179-193.
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Articles from other publishers (4)
Masoumeh Karami, Chiya Jalali & Sako Mirzaie. (2017) Combined virtual screening, MMPBSA, molecular docking and dynamics studies against deadly anthrax: An in silico effort to inhibit Bacillus anthracis nucleoside hydrolase. Journal of Theoretical Biology 420, pages 180-189.
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A.M. Andrianov & I.V. Anishchenko. (2011) Computer modeling of the promising inhibitors of the hiv-1 subtype a replication as a framework for the rational anti-aids drug design. Biomeditsinskaya Khimiya 57:2, pages 161-173.
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A. M. Andrianov & I. V. Anishchenko. (2010) Computer modeling of promising inhibitors of the HIV-1 subtype A replication as a framework for the rational anti-AIDS drug design. Biochemistry (Moscow) Supplement Series B: Biomedical Chemistry 4:4, pages 333-341.
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Alexander M. Andrianov & Ivan V. Anishchenko. (2010) Computer-assisted anti-AIDS drug development: cyclophilin B against the HIV-1 subtype A V3 loop. Health 02:07, pages 661-671.
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