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Journal of Biomolecular Structure and Dynamics Volume 28, 2010 - Issue 2
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Original Articles

A Complexity-based Method to Compare RNA Secondary Structures and its Application

Shengli Zhang School of Mathematical Sciences, Dalian University of Technology, Dalian, 116024, P. R. China
&
Tianming Wang School of Mathematical Sciences, Dalian University of Technology, Dalian, 116024, P. R. China
Pages 247-258 | Received 04 Dec 2009, Published online: 15 May 2012

Citations (13)

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Read on this site (8)

Jae-Kwan Kim & Deok-Soo Kim. (2012) BetaSuperposer: superposition of protein surfaces using beta-shapes. Journal of Biomolecular Structure and Dynamics 30:6, pages 684-700.
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Parviz Soleimani, Abolfazl Barzegar & Ali Movafeghi. (2012) Phylogenetic study of SIVcpz MT145 virus based on proteome and genome analysis. Journal of Biomolecular Structure and Dynamics 30:3, pages 328-337.
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Joydeep Chakraborty & TapanK. Dutta. (2011) From Lipid Transport to Oxygenation of Aromatic Compounds: Evolution within the Bet v1-like Superfamily. Journal of Biomolecular Structure and Dynamics 29:1, pages 67-78.
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Ra'edM. Al-Khatib, Nur' Aini Abdul Rashid & Rosni Abdullah. (2011) Thermodynamic Heuristics with Case-Based Reasoning: Combined Insights for RNA Pseudoknot Secondary Structure. Journal of Biomolecular Structure and Dynamics 29:1, pages 1-26.
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Xiaoqing Liu, Qi Dai, Lihua Li & Zerong He. (2011) An Efficient Binomial Model-Based Measure for Sequence Comparison and its Application. Journal of Biomolecular Structure and Dynamics 28:5, pages 833-843.
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Tung-Ti Chang, Mao-Feng Sun, Hsin-Yi Chen, Fuu-Jen Tsai, Mark Fisher, Jaung-Geng Lin & Calvin Yu-Chian Chen. (2011) Screening from the World's Largest TCM Database Against H1N1 Virus. Journal of Biomolecular Structure and Dynamics 28:5, pages 773-786.
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Yusen Zhang & Wei Chen. (2011) A Measure of DNA Sequence Dissimilarity Based on Free Energy of Nearest-neighbor Interaction. Journal of Biomolecular Structure and Dynamics 28:4, pages 557-565.
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Guisong Chang & Tianming Wang. (2011) Weighted Relative Entropy for Alignment-free Sequence Comparison Based on Markov Model. Journal of Biomolecular Structure and Dynamics 28:4, pages 545-555.
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Articles from other publishers (5)

Qi Dai, Zhaofang Yan, Zhuoxing Shi, Xiaoqing Liu, Yuhua Yao & Pingan He. (2013) Study of LZ-word distribution and its application for sequence comparison. Journal of Theoretical Biology 336, pages 52-60.
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Liwei Liu, Dongbo Li & Fenglan Bai. (2012) A relative Lempel–Ziv complexity: Application to comparing biological sequences. Chemical Physics Letters 530, pages 107-112.
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Liwei Liu, Fenglan Bai & Tianming Wang. (2012) Comparing RNA Secondary Structures Based on LZ Complexity. Physics Procedia 33, pages 96-103.
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Yuan Li & Shaojie Zhang. (2011) Finding stable local optimal RNA secondary structures. Bioinformatics 27:21, pages 2994-3001.
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Yujuan Huang, Lianping Yang & Tianming Wang. (2011) Phylogenetic analysis of DNA sequences based on the generalized pseudo-amino acid composition. Journal of Theoretical Biology 269:1, pages 217-223.
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