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Journal of Biomolecular Structure and Dynamics Volume 34, 2016 - Issue 6
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Original Articles

Structural modeling and molecular simulation analysis of HvAP2/EREBP from barley

Bharati PandeyPlant Biotechnology Laboratory, ICAR-Indian Institute of Wheat and Barley, Karnal132001, Haryana, IndiaView further author information
,
Pradeep SharmaPlant Biotechnology Laboratory, ICAR-Indian Institute of Wheat and Barley, Karnal132001, Haryana, IndiaCorrespondence[email protected]
View further author information
,
Chetna TyagiAgricultural Knowledge Management Unit, Indian Agricultural Research Institute, New Delhi110032, IndiaView further author information
,
Sukriti GoyalSchool of Biotechnology, Jawaharlal Nehru University, New Delhi110067, IndiaView further author information
,
Abhinav GroverSchool of Biotechnology, Jawaharlal Nehru University, New Delhi110067, IndiaView further author information
&
Indu SharmaPlant Biotechnology Laboratory, ICAR-Indian Institute of Wheat and Barley, Karnal132001, Haryana, IndiaView further author information
Pages 1159-1175 | Received 17 Mar 2015, Accepted 12 Jul 2015, Published online: 19 Oct 2015

Citations (12)

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Sameer Hassan, Katrin Berk & Henrik Aronsson. (2022) Evolution and identification of DREB transcription factors in the wheat genome: modeling, docking and simulation of DREB proteins associated with salt stress. Journal of Biomolecular Structure and Dynamics 40:16, pages 7191-7204.
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Bharati Pandey, Sonam Grover, Sukriti Goyal, Salma Jamal, Aditi Singh, Jagdeep Kaur & Abhinav Grover. (2019) Novel missense mutations in gidB gene associated with streptomycin resistance in Mycobacterium tuberculosis: insights from molecular dynamics. Journal of Biomolecular Structure and Dynamics 37:1, pages 20-35.
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Aravind Kumar Konda, Rohit Farmer, Khela Ram Soren, Shanmugavadivel P.S.Aravind Setti. (2018) Structural modelling and molecular dynamics of a multi-stress responsive WRKY TF-DNA complex towards elucidating its role in stress signalling mechanisms in chickpea. Journal of Biomolecular Structure and Dynamics 36:9, pages 2279-2291.
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Sunil Kanti Mondal & Sujit Roy. (2018) Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. Journal of Biomolecular Structure and Dynamics 36:6, pages 1577-1601.
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Articles from other publishers (8)

Mahsa Nouri Barkestani, Sina Naserian, Fatemeh Khoddam, Sara Shamdani & Bijan Bambai. (2022) Optimization of IL-1RA structure to achieve a smaller protein with a higher affinity to its receptor. Scientific Reports 12:1.
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Akshay Singh, Ajay Kumar Sharma, Nagendra Kumar Singh, Humira Sonah, Rupesh Deshmukh & Tilak Raj Sharma. (2019) Understanding the Effect of Structural Diversity in WRKY Transcription Factors on DNA Binding Efficiency through Molecular Dynamics Simulation. Biology 8:4, pages 83.
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Ravindra Donde, Manoj Kumar Gupta, Gayatri Gouda, Jitendra Kumar, Ramakrishna Vadde, Khirod Kumar Sahoo, Sushanta Kumar Dash & Lambodar Behera. (2019) Computational characterization of structural and functional roles of DREB1A, DREB1B and DREB1C in enhancing cold tolerance in rice plant. Amino Acids 51:5, pages 839-853.
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Gopal Kumar Prajapati, Bharati Pandey, Awdhesh Kumar Mishra, Kwang-Hyun Baek & Dev Mani Pandey. (2019) Identification of GCC-box and TCC-box motifs in the promoters of differentially expressed genes in rice (Oryza sativa L.): Experimental and computational approaches. PLOS ONE 14:4, pages e0214964.
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Bharati Pandey, Abhinav Grover & Pradeep Sharma. (2018) Molecular dynamics simulations revealed structural differences among WRKY domain-DNA interaction in barley (Hordeum vulgare). BMC Genomics 19:1.
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Bharati Pandey, Abhinav Grover & Pradeep Sharma. (2018) Dynamics of Dof domain‐DNA interaction in wheat: Insights from atomistic simulations and free energy landscape. Journal of Cellular Biochemistry 119:11, pages 8818-8829.
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Bharati Pandey & Pradeep Sharma. (2017) Structural insights into impact of Y134F mutation and discovery of novel fungicidal compounds against CYP51 in Puccinia triticina . Journal of Cellular Biochemistry 119:3, pages 2588-2603.
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Ujjal J. Phukan, Gajendra S. Jeena, Vineeta Tripathi & Rakesh K. Shukla. (2017) Regulation of Apetala2/Ethylene Response Factors in Plants. Frontiers in Plant Science 8.
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